Carg07471 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07471
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Translocase subunit seca
Location	Cucurbita_argyrosperma_scaffold_019 : 1018406 .. 1019473 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTCTCCAACTACTGTAAGCCCAGCTAAAAAGGACCACGCCTTCATCATTTTCGGTAAAAAGAAAAGAAAAAAAAAATCTTTTAATTTAAAAAAAAAAAAGACAAAAAGACAAAAAGACAAAAAACACCTCTCAACGACGTCGTTTCCACCGGTCGTCGCCCGTTTACTCTCGCAGTATATAGGAAACCCACTAACATCAGAGCGACTTTCTCCCCTCCGGTGGCTCAAAGCTCCAGCTTTCCTCATCGTTCTTTGGGGTTCCTTCAGGTTAATCTCTTTATCCCTTCTATCACTTTAATCTGTTCTTCGCCTATTTTTATCATATCCACATCGAAATTTCTTTGAATTCTTCGAGTTTTAGCTGATGAATTTCGGTTTCTATTCCCTTGGCTGCTGTATGCCTTTCCTATTTTTGGTCGACCCTTCCTTCGTTTTTCCCGGATCTGGACGCTTCTTAGCTCCTCCTAATCCATATCCCCAATTCTATATATCCGATGCTTTGATCTTTGTTTTGTGTTCGTTCTCGTTTCGGAAAGGAGAGACCAACTTGCGTTTAGTTTGATTCTGAAAAGAGGTTGTTCGATCTTGTTCTATGTCTAGATCTCAGATCTGTTTCTGGTTGGGCAAATTTTACCTGAAATGTTATGGCACTTGATTTTATTTTGAATTAGAGATATTTGGATCTGTTGCTTGGCTATACGATCTGCTAAAATTTGGTATAATTAGGGTATTTTGAGGTTGGATAGATCTAAGTTATTGTTTGTGGTTGGTGATTTATGCAGGCGTTTCTTCTGTGGATCTGCCAGTTTGAAAGATGAATCAATTCATTTTTCAGCAGAACACCTTTTTTTCATGTGAAGAGACAAGGGGGTATGCCTCTATCTCTGATCTGAAGGACCCTGTTGTGTGTCCCAAGCCCCGGCGGCTTGCAATTCTTGCTAACAATCACATTAAACACCCCTTGAAATGGCACCAAGCTGAGGCTTGTGATTCAAAAGCTGGGGCAGACCTTCTAGACATCATTTTAAACAAGGCTAGCTCTCACTCCCCTGATTCAACTTGA

mRNA sequence

ATGTATTCTCCAACTACTGTAAGCCCAGCTAAAAAGGACCACGCCTTCATCATTTTCGACAAAAAGACAAAAAGACAAAAAACACCTCTCAACGACGTCGTTTCCACCGGTCGTCGCCCGTTTACTCTCGCAGTATATAGGAAACCCACTAACATCAGAGCGACTTTCTCCCCTCCGGTGGCTCAAAGCTCCAGCTTTCCTCATCGTTCTTTGGGGTTCCTTCAGCAGAACACCTTTTTTTCATGTGAAGAGACAAGGGGGTATGCCTCTATCTCTGATCTGAAGGACCCTGTTGTGTGTCCCAAGCCCCGGCGGCTTGCAATTCTTGCTAACAATCACATTAAACACCCCTTGAAATGGCACCAAGCTGAGGCTTGTGATTCAAAAGCTGGGGCAGACCTTCTAGACATCATTTTAAACAAGGCTAGCTCTCACTCCCCTGATTCAACTTGA

Coding sequence (CDS)

ATGTATTCTCCAACTACTGTAAGCCCAGCTAAAAAGGACCACGCCTTCATCATTTTCGACAAAAAGACAAAAAGACAAAAAACACCTCTCAACGACGTCGTTTCCACCGGTCGTCGCCCGTTTACTCTCGCAGTATATAGGAAACCCACTAACATCAGAGCGACTTTCTCCCCTCCGGTGGCTCAAAGCTCCAGCTTTCCTCATCGTTCTTTGGGGTTCCTTCAGCAGAACACCTTTTTTTCATGTGAAGAGACAAGGGGGTATGCCTCTATCTCTGATCTGAAGGACCCTGTTGTGTGTCCCAAGCCCCGGCGGCTTGCAATTCTTGCTAACAATCACATTAAACACCCCTTGAAATGGCACCAAGCTGAGGCTTGTGATTCAAAAGCTGGGGCAGACCTTCTAGACATCATTTTAAACAAGGCTAGCTCTCACTCCCCTGATTCAACTTGA

Protein sequence

MYSPTTVSPAKKDHAFIIFDKKTKRQKTPLNDVVSTGRRPFTLAVYRKPTNIRATFSPPVAQSSSFPHRSLGFLQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDSKAGADLLDIILNKASSHSPDST

Homology

[Close]

BLAST of Carg07471 vs. NCBI nr
Match: XP_022948961.1 (uncharacterized protein LOC111452452 [Cucurbita moschata])

HSP 1 Score: 147.1 bits (370), Expect = 4.7e-32
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 75  QQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDSKAGADL 134
           QQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDSKAGADL
Sbjct: 7   QQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDSKAGADL 66

Query: 135 LDIILNKASSHS 147
           LDIILNK S  S
Sbjct: 67  LDIILNKGSEQS 78

[Close]

BLAST of Carg07471 vs. NCBI nr
Match: XP_022997677.1 (uncharacterized protein LOC111492569 [Cucurbita maxima])

HSP 1 Score: 144.1 bits (362), Expect = 4.0e-31
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 75  QQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDSKAGADL 134
           QQNTF+SCEETRGYASISDLK+PVVCPKPRRLAILANNHIKHPLKWHQAEACDSKAGADL
Sbjct: 7   QQNTFYSCEETRGYASISDLKNPVVCPKPRRLAILANNHIKHPLKWHQAEACDSKAGADL 66

Query: 135 LDIILNKASSHS 147
           LDIILNK S  S
Sbjct: 67  LDIILNKGSEQS 78

[Close]

BLAST of Carg07471 vs. NCBI nr
Match: XP_023524595.1 (uncharacterized protein LOC111788490 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.1 bits (362), Expect = 4.0e-31
Identity = 68/72 (94.44%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 75  QQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDSKAGADL 134
           QQNTFFSCEET GYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDSKAGADL
Sbjct: 7   QQNTFFSCEETWGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDSKAGADL 66

Query: 135 LDIILNKASSHS 147
           LDIILNK S  S
Sbjct: 67  LDIILNKGSEQS 78

[Close]

BLAST of Carg07471 vs. NCBI nr
Match: XP_011651371.1 (PREDICTED: uncharacterized protein LOC101218020 [Cucumis sativus] >KGN57754.1 hypothetical protein Csa_3G280930 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 3.2e-28
Identity = 62/73 (84.93%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 74  LQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDSKAGAD 133
           +QQNTF SCEETRG+ASISDLKDPVVCPKPRRLAILANNHIK PL+WHQ E CDSKAGAD
Sbjct: 6   VQQNTFLSCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQTEVCDSKAGAD 65

Query: 134 LLDIILNKASSHS 147
           LLDIIL K S  S
Sbjct: 66  LLDIILKKGSEQS 78

[Close]

BLAST of Carg07471 vs. NCBI nr
Match: XP_008461589.1 (PREDICTED: uncharacterized protein LOC103500158 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 3.2e-28
Identity = 62/73 (84.93%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 74  LQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDSKAGAD 133
           +QQNTF SCEETRG+ASISDLKDPVVCPKPRRLAILANNHIK PL+WHQ E CDSKAGAD
Sbjct: 6   VQQNTFISCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQTEVCDSKAGAD 65

Query: 134 LLDIILNKASSHS 147
           LLDIIL K S  S
Sbjct: 66  LLDIILKKGSEQS 78

[Close]

BLAST of Carg07471 vs. TAIR10
Match: AT5G16110.1 (unknown protein)

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-13
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 74  LQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEA----CDSK 133
           LQQN F S EE  G+    D KD VVCPKPRR+ +LANN I+ PL+ H ++A    CDSK
Sbjct: 72  LQQNAFMSREEMMGF----DRKDLVVCPKPRRVGLLANNVIR-PLRLHMSQAAADLCDSK 131

Query: 134 AGADLLDIILNK 142
           AGA+LL+II  K
Sbjct: 132 AGAELLEIIRRK 138

[Close]

BLAST of Carg07471 vs. TAIR10
Match: AT1G13390.1 (unknown protein)

HSP 1 Score: 68.6 bits (166), Expect = 3.9e-12
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 74  LQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKW---HQAEACDSKA 133
           +QQN F   EE R  A++SD +D V+CPKPRR+  L N+H    L+W   HQ E C+S +
Sbjct: 7   IQQNAF---EEMRRNAAVSDRRDAVICPKPRRVGAL-NHHSSRSLRWQLNHQMELCESNS 66

Query: 134 GADLLDIILNK 142
           G+++LD IL K
Sbjct: 67  GSEILDFILTK 73

[Close]

BLAST of Carg07471 vs. TAIR10
Match: AT3G02555.1 (unknown protein)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-10
Identity = 43/82 (52.44%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 74  LQQNTFFSCEETRGYASI-SDLKDPVVCPKPRRLAILANNHIKHPLKWHQA-----EACD 133
           LQQN F S EE+RG+  I S   D VVCPKPRR    ANN I+ P + H +     + CD
Sbjct: 6   LQQNAFLSREESRGFVPIYSHPVDSVVCPKPRR----ANNVIR-PFRLHFSLSGADDVCD 65

Query: 134 SKAGADLLDIILNK--ASSHSP 148
           SKAG DLLDI   K   SS SP
Sbjct: 66  SKAGEDLLDIFRRKESVSSRSP 82

[Close]

BLAST of Carg07471 vs. TAIR10
Match: AT1G68490.1 (unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 98  VVCPKPRRLAILANNHIKHPLK------WHQAEACDSKAGADLLDIILNK 142
           VVCPKPRR+ +  N+H  HP +       HQ E C+SKA  D+LDIIL K
Sbjct: 32  VVCPKPRRIGLRNNHH--HPSRSLRCYFSHQLELCESKAETDILDIILTK 79

[Close]

BLAST of Carg07471 vs. TrEMBL
Match: tr|A0A1S3CF27|A0A1S3CF27_CUCME (uncharacterized protein LOC103500158 OS=Cucumis melo OX=3656 GN=LOC103500158 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.1e-28
Identity = 62/73 (84.93%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 74  LQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDSKAGAD 133
           +QQNTF SCEETRG+ASISDLKDPVVCPKPRRLAILANNHIK PL+WHQ E CDSKAGAD
Sbjct: 6   VQQNTFISCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQTEVCDSKAGAD 65

Query: 134 LLDIILNKASSHS 147
           LLDIIL K S  S
Sbjct: 66  LLDIILKKGSEQS 78

[Close]

BLAST of Carg07471 vs. TrEMBL
Match: tr|A0A0A0L9U7|A0A0A0L9U7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G280930 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.1e-28
Identity = 62/73 (84.93%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 74  LQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDSKAGAD 133
           +QQNTF SCEETRG+ASISDLKDPVVCPKPRRLAILANNHIK PL+WHQ E CDSKAGAD
Sbjct: 6   VQQNTFLSCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQTEVCDSKAGAD 65

Query: 134 LLDIILNKASSHS 147
           LLDIIL K S  S
Sbjct: 66  LLDIILKKGSEQS 78

[Close]

BLAST of Carg07471 vs. TrEMBL
Match: tr|U5GCT0|U5GCT0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G114700v3 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.1e-16
Identity = 50/78 (64.10%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 74  LQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKW---HQAEACDSKA 133
           LQQN    C+E RG  SISD K PVVCPKPRR+ ILAN+ I+ PL+W   HQAE CDSKA
Sbjct: 6   LQQNAITFCDERRGLVSISDYKGPVVCPKPRRVGILANSPIR-PLRWPVSHQAEMCDSKA 65

Query: 134 GADLLDIILNKASSHSPD 149
           GA+LLDIIL K   H  D
Sbjct: 66  GAELLDIILMK-EGHGAD 81

[Close]

BLAST of Carg07471 vs. TrEMBL
Match: tr|A0A067K9N7|A0A067K9N7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12982 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.5e-15
Identity = 49/80 (61.25%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 74  LQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKW---HQAEACDSKA 133
           LQ+N   SC+E RG  SI D K PVVCPKPRR+ ILANN I+  L+W   HQAE CD+KA
Sbjct: 6   LQKNAIASCDEARGSVSIYDPKGPVVCPKPRRVGILANNPIR-SLRWQMSHQAEMCDAKA 65

Query: 134 GADLLDIILNKASSHSPDST 151
           GADLLDIIL K       ST
Sbjct: 66  GADLLDIILMKDGYRVEQST 84

[Close]

BLAST of Carg07471 vs. TrEMBL
Match: tr|B9S5F6|B9S5F6_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1571370 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.0e-14
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 74  LQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKW---HQAEACDSKA 133
           LQ+N   SC+E+RG  SI D K PVVCPKPRR+ ILANN I+ PL+W   HQAE  +SKA
Sbjct: 6   LQKNAVASCDESRGLVSIYDPKGPVVCPKPRRVGILANNPIR-PLRWHMSHQAEIYESKA 65

Query: 134 GADLLDIILNKASSHSPDS 150
           GADLLDIIL K   H+ +S
Sbjct: 66  GADLLDIILMK-EGHAVES 82

The following BLAST results are available for this feature:

BLAST of Carg07471 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948961.1	4.7e-32	95.83	uncharacterized protein LOC111452452 [Cucurbita moschata]	[more]
XP_022997677.1	4.0e-31	93.06	uncharacterized protein LOC111492569 [Cucurbita maxima]	[more]
XP_023524595.1	4.0e-31	94.44	uncharacterized protein LOC111788490 [Cucurbita pepo subsp. pepo]	[more]
XP_011651371.1	3.2e-28	84.93	PREDICTED: uncharacterized protein LOC101218020 [Cucumis sativus] >KGN57754.1 hy...	[more]
XP_008461589.1	3.2e-28	84.93	PREDICTED: uncharacterized protein LOC103500158 [Cucumis melo]	[more]

BLAST of Carg07471 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16110.1	2.0e-13	56.94	unknown protein	[more]
AT1G13390.1	3.9e-12	47.89	unknown protein	[more]
AT3G02555.1	2.1e-10	52.44	unknown protein	[more]
AT1G68490.1	1.1e-06	52.00	unknown protein	[more]

BLAST of Carg07471 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07471 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CF27\|A0A1S3CF27_CUCME	2.1e-28	84.93	uncharacterized protein LOC103500158 OS=Cucumis melo OX=3656 GN=LOC103500158 PE=...	[more]
tr\|A0A0A0L9U7\|A0A0A0L9U7_CUCSA	2.1e-28	84.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G280930 PE=4 SV=1	[more]
tr\|U5GCT0\|U5GCT0_POPTR	4.1e-16	64.10	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G114700v3 PE=...	[more]
tr\|A0A067K9N7\|A0A067K9N7_JATCU	3.5e-15	61.25	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12982 PE=4 SV=1	[more]
tr\|B9S5F6\|B9S5F6_RICCO	1.0e-14	62.03	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1571370 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07471-RA	Carg07471-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33384	FAMILY NOT NAMED	coord: 74..144
None	No IPR available	PANTHER	PTHR33384:SF2	SUBFAMILY NOT NAMED	coord: 74..144

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07471	CmaCh01G003830	Cucurbita maxima (Rimu)	carcmaB1059
Carg07471	CmoCh01G004040	Cucurbita moschata (Rifu)	carcmoB1033
Carg07471	Lsi05G003810	Bottle gourd (USVL1VR-Ls)	carlsiB700
Carg07471	Bhi01G001465	Wax gourd	carwgoB0896

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg07471	Carg22269	Silver-seed gourd	carcarB471

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07471	Cucumber (Gy14) v2	carcgybB0757
Carg07471	Cucumber (Gy14) v1	carcgyB0854
Carg07471	Cucurbita maxima (Rimu)	carcmaB1057
Carg07471	Cucurbita moschata (Rifu)	carcmoB1031
Carg07471	Cucurbita pepo (Zucchini)	carcpeB1072
Carg07471	Cucurbita pepo (Zucchini)	carcpeB1073
Carg07471	Wild cucumber (PI 183967)	carcpiB0798
Carg07471	Cucumber (Chinese Long) v2	carcuB0780
Carg07471	Cucumber (Chinese Long) v3	carcucB0801
Carg07471	Melon (DHL92) v3.5.1	carmeB0757
Carg07471	Melon (DHL92) v3.6.1	carmedB0772
Carg07471	Watermelon (Charleston Gray)	carwcgB0739
Carg07471	Watermelon (97103) v1	carwmB0760
Carg07471	Watermelon (97103) v2	carwmbB0795