Carg22269 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22269
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Translocase subunit seca
Location	Cucurbita_argyrosperma_scaffold_164 : 101910 .. 102663 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTGGTCTCGCGTAGGGTTTGTCCTCGTTAGGGAAAGGTTGATTCTGAAAAAGGTTGTTCGCGGTTTTTAAGGATCTGTTCTTTGGTAGTTTTTTTTTTCGTATAAAAAGAGATCTATTCTTGTTTTCTTGGTCTGGATCTCAGATCTGTTGCTGGTTGGGAAATTTTTTGAAGTTTTTTGTCCAAAAAATTAGCTGAAAGGTTATGATTTTGTGTTTTTGTTCATGGAAATTGGATTCTTAGCTCAGATCTGTTGATTCTAAACTTAAAGAGATTTGGATCTGTTGCTTGGCTATAGTTTTAGCATTGATAGAATGGATTTTTTTACTAGTTCTCGATCAGATCTGACTAATTATGAGATTTTGAGCTTTGATTGAATGAATATTTGGCTAGTTTTCCATTAGATCTGACTGTGTTAGAGTTGCTGTGTATCCATTGTCTCAACGCCGTTTGAATCGGGATATTTGCAGGCGTTCTTCTGTGGATCTGCCAGTTTCAAAGATGAATCATTATATTGTTAAGCAGAATACGTTTATTTCACGTGAGGAGACTAAGGGCTTTGCCTCAATCTCTGATCTGAAGGACCCAATTGTCTGCCCAAAGCCCAGGCGACTCGCAATTCTTGCTAACAATCACATTAAACAGCCCTTAAGATGGCACCAAACTGAGTTTTGTGATTCAAAAGCTGGGGCAGATCTCCTAGATATCATCTTAAAGAAGGCAAGTTCTAATTATAAGTTCAATATTTGA

mRNA sequence

ATGTTGTGGTCTCGCGTAGGATCTGACTGTGTTAGAGTTGCTGTGTATCCATTGTCTCAACGCCGTTTGAATCGGGATATTTGCAGGCGTTCTTCTGTGGATCTGCCAGTTTCAAAGATGAATCATTATATTGTTAAGCAGAATACGTTTATTTCACGTGAGGAGACTAAGGGCTTTGCCTCAATCTCTGATCTGAAGGACCCAATTGTCTGCCCAAAGCCCAGGCGACTCGCAATTCTTGCTAACAATCACATTAAACAGCCCTTAAGATGGCACCAAACTGAGTTTTGTGATTCAAAAGCTGGGGCAGATCTCCTAGATATCATCTTAAAGAAGGCAAGTTCTAATTATAAGTTCAATATTTGA

Coding sequence (CDS)

ATGTTGTGGTCTCGCGTAGGATCTGACTGTGTTAGAGTTGCTGTGTATCCATTGTCTCAACGCCGTTTGAATCGGGATATTTGCAGGCGTTCTTCTGTGGATCTGCCAGTTTCAAAGATGAATCATTATATTGTTAAGCAGAATACGTTTATTTCACGTGAGGAGACTAAGGGCTTTGCCTCAATCTCTGATCTGAAGGACCCAATTGTCTGCCCAAAGCCCAGGCGACTCGCAATTCTTGCTAACAATCACATTAAACAGCCCTTAAGATGGCACCAAACTGAGTTTTGTGATTCAAAAGCTGGGGCAGATCTCCTAGATATCATCTTAAAGAAGGCAAGTTCTAATTATAAGTTCAATATTTGA

Protein sequence

MLWSRVGSDCVRVAVYPLSQRRLNRDICRRSSVDLPVSKMNHYIVKQNTFISREETKGFASISDLKDPIVCPKPRRLAILANNHIKQPLRWHQTEFCDSKAGADLLDIILKKASSNYKFNI

Homology

[Close]

BLAST of Carg22269 vs. NCBI nr
Match: XP_022935211.1 (uncharacterized protein LOC111442160 [Cucurbita moschata])

HSP 1 Score: 157.1 bits (396), Expect = 3.7e-35
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 40  MNHYIVKQNTFISREETKGFASISDLKDPIVCPKPRRLAILANNHIKQPLRWHQTEFCDS 99
           MNHYIVKQNTFISREETKGFASISDLKDPIVCPKPRRLAILANNHIKQPLRWHQTEFCDS
Sbjct: 1   MNHYIVKQNTFISREETKGFASISDLKDPIVCPKPRRLAILANNHIKQPLRWHQTEFCDS 60

Query: 100 KAGADLLDIILKKAS 115
           KAGADLLDIILKK S
Sbjct: 61  KAGADLLDIILKKGS 75

[Close]

BLAST of Carg22269 vs. NCBI nr
Match: XP_023528274.1 (uncharacterized protein LOC111791243 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.1 bits (396), Expect = 3.7e-35
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 40  MNHYIVKQNTFISREETKGFASISDLKDPIVCPKPRRLAILANNHIKQPLRWHQTEFCDS 99
           MNHYIVKQNTFISREETKGFASISDLKDPIVCPKPRRLAILANNHIKQPLRWHQTEFCDS
Sbjct: 1   MNHYIVKQNTFISREETKGFASISDLKDPIVCPKPRRLAILANNHIKQPLRWHQTEFCDS 60

Query: 100 KAGADLLDIILKKAS 115
           KAGADLLDIILKK S
Sbjct: 61  KAGADLLDIILKKGS 75

[Close]

BLAST of Carg22269 vs. NCBI nr
Match: XP_022983663.1 (uncharacterized protein LOC111482209 [Cucurbita maxima])

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 40  MNHYIVKQNTFISREETKGFASISDLKDPIVCPKPRRLAILANNHIKQPLRWHQTEFCDS 99
           MNHYIV+QNTFISREETKGFASISDLKDPIVCPKPRRLAILANNHIKQPLRWHQTEFCDS
Sbjct: 1   MNHYIVQQNTFISREETKGFASISDLKDPIVCPKPRRLAILANNHIKQPLRWHQTEFCDS 60

Query: 100 KAGADLLDIILKKAS 115
           KAGADLLDIILKK S
Sbjct: 61  KAGADLLDIILKKGS 75

[Close]

BLAST of Carg22269 vs. NCBI nr
Match: XP_008461589.1 (PREDICTED: uncharacterized protein LOC103500158 [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 4.9e-32
Identity = 68/75 (90.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 40  MNHYIVKQNTFISREETKGFASISDLKDPIVCPKPRRLAILANNHIKQPLRWHQTEFCDS 99
           MNH+IV+QNTFIS EET+GFASISDLKDP+VCPKPRRLAILANNHIKQPLRWHQTE CDS
Sbjct: 1   MNHFIVQQNTFISCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQTEVCDS 60

Query: 100 KAGADLLDIILKKAS 115
           KAGADLLDIILKK S
Sbjct: 61  KAGADLLDIILKKGS 75

[Close]

BLAST of Carg22269 vs. NCBI nr
Match: XP_022148186.1 (uncharacterized protein LOC111016920 [Momordica charantia])

HSP 1 Score: 146.4 bits (368), Expect = 6.5e-32
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 40  MNHYIVKQNTFISREETKGFASISDLKDPIVCPKPRRLAILANNHIKQPLRWHQTEFCDS 99
           MNH+IV+QNTFIS EET+GFASISDLKDP+VCPKPRRLAILANNH+KQPLRWHQTE CDS
Sbjct: 1   MNHFIVQQNTFISCEETRGFASISDLKDPVVCPKPRRLAILANNHVKQPLRWHQTEVCDS 60

Query: 100 KAGADLLDIILKKAS 115
           KAGADLLDIILKK S
Sbjct: 61  KAGADLLDIILKKGS 75

[Close]

BLAST of Carg22269 vs. TAIR10
Match: AT5G16110.1 (unknown protein)

HSP 1 Score: 84.0 bits (206), Expect = 7.1e-17
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 37  VSKMNHYIVKQNTFISREETKGFASISDLKDPIVCPKPRRLAILANNHIKQPLRWHQT-- 96
           V KMNH  ++QN F+SREE  GF    D KD +VCPKPRR+ +LANN I+ PLR H +  
Sbjct: 64  VKKMNHCNLQQNAFMSREEMMGF----DRKDLVVCPKPRRVGLLANNVIR-PLRLHMSQA 123

Query: 97  --EFCDSKAGADLLDIILKK 113
             + CDSKAGA+LL+II +K
Sbjct: 124 AADLCDSKAGAELLEIIRRK 138

[Close]

BLAST of Carg22269 vs. TAIR10
Match: AT3G02555.1 (unknown protein)

HSP 1 Score: 70.9 bits (172), Expect = 6.3e-13
Identity = 42/81 (51.85%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 40  MNHYIVKQNTFISREETKGFASI-SDLKDPIVCPKPRRLAILANNHIKQPLRWH-----Q 99
           MNH  ++QN F+SREE++GF  I S   D +VCPKPRR    ANN I+ P R H      
Sbjct: 1   MNHCSLQQNAFLSREESRGFVPIYSHPVDSVVCPKPRR----ANNVIR-PFRLHFSLSGA 60

Query: 100 TEFCDSKAGADLLDIILKKAS 115
            + CDSKAG DLLDI  +K S
Sbjct: 61  DDVCDSKAGEDLLDIFRRKES 76

[Close]

BLAST of Carg22269 vs. TAIR10
Match: AT1G13390.1 (unknown protein)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-12
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 40  MNHYIVKQNTFISREETKGFASISDLKDPIVCPKPRRLAILANNHIKQPLRW---HQTEF 99
           MN   ++QN F   EE +  A++SD +D ++CPKPRR+  L N+H  + LRW   HQ E 
Sbjct: 2   MNSCGIQQNAF---EEMRRNAAVSDRRDAVICPKPRRVGAL-NHHSSRSLRWQLNHQMEL 61

Query: 100 CDSKAGADLLDIILKK 113
           C+S +G+++LD IL K
Sbjct: 62  CESNSGSEILDFILTK 73

[Close]

BLAST of Carg22269 vs. TAIR10
Match: AT1G68490.1 (unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 9.4e-09
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 40  MNHYIVKQNTFISREETKGFASISDL---KDPIVCPKPRRLAILAN-NHIKQPLRW---H 99
           MNH+ V+ N F +  + +  +S+S +   +  +VCPKPRR+ +  N +H  + LR    H
Sbjct: 1   MNHFAVQPNAFAAGGDLRS-SSVSVVERDQTTVVCPKPRRIGLRNNHHHPSRSLRCYFSH 60

Query: 100 QTEFCDSKAGADLLDIILKK 113
           Q E C+SKA  D+LDIIL K
Sbjct: 61  QLELCESKAETDILDIILTK 79

[Close]

BLAST of Carg22269 vs. TrEMBL
Match: tr|A0A1S3CF27|A0A1S3CF27_CUCME (uncharacterized protein LOC103500158 OS=Cucumis melo OX=3656 GN=LOC103500158 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.3e-32
Identity = 68/75 (90.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 40  MNHYIVKQNTFISREETKGFASISDLKDPIVCPKPRRLAILANNHIKQPLRWHQTEFCDS 99
           MNH+IV+QNTFIS EET+GFASISDLKDP+VCPKPRRLAILANNHIKQPLRWHQTE CDS
Sbjct: 1   MNHFIVQQNTFISCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQTEVCDS 60

Query: 100 KAGADLLDIILKKAS 115
           KAGADLLDIILKK S
Sbjct: 61  KAGADLLDIILKKGS 75

[Close]

BLAST of Carg22269 vs. TrEMBL
Match: tr|A0A0A0L9U7|A0A0A0L9U7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G280930 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 5.6e-32
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 40  MNHYIVKQNTFISREETKGFASISDLKDPIVCPKPRRLAILANNHIKQPLRWHQTEFCDS 99
           MNH+IV+QNTF+S EET+GFASISDLKDP+VCPKPRRLAILANNHIKQPLRWHQTE CDS
Sbjct: 1   MNHFIVQQNTFLSCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQTEVCDS 60

Query: 100 KAGADLLDIILKKAS 115
           KAGADLLDIILKK S
Sbjct: 61  KAGADLLDIILKKGS 75

[Close]

BLAST of Carg22269 vs. TrEMBL
Match: tr|Q1KUR8|Q1KUR8_9ROSI (Uncharacterized protein OS=Tarenaya spinosa OX=228870 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.2e-19
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 29  RRSSVDLPVSKMNHYIVKQNTFISREETKGFASISDLKDPIVCPKPRRLAILANNHIKQP 88
           RRSS D   SKMNH  ++QN F+SR+E +GF  I D KD +VCPKPRR+ ILANN ++ P
Sbjct: 12  RRSSADQGGSKMNHCNLQQNAFVSRDEMRGFVPICDPKDLVVCPKPRRVGILANNGMR-P 71

Query: 89  LRWH---QTEFCDSKAGADLLDIILKK 113
           LR H     E CDSKAGA+LLDIIL+K
Sbjct: 72  LRLHVSQAAEVCDSKAGAELLDIILRK 97

[Close]

BLAST of Carg22269 vs. TrEMBL
Match: tr|Q1KUV3|Q1KUV3_9ROSI (Uncharacterized protein OS=Tarenaya spinosa OX=228870 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18
Identity = 55/88 (62.50%), Postives = 65/88 (73.86%), Query Frame = 0


Query: 29  RRSSVDLPVSKMNHYIVKQNTFISREETK-GFASISDLKDPIVCPKPRRLAILANNHIKQ 88
           RRSS D   SKMN   ++QN F+SR+E + GF  ISD KDP+VCP PRR+ ILANN I+ 
Sbjct: 12  RRSSADQGGSKMNRCSLQQNAFVSRDEMRGGFVPISDPKDPVVCPMPRRVGILANNVIR- 71

Query: 89  PLRWHQ---TEFCDSKAGADLLDIILKK 113
           PLR H    +E CDSKAGADLLDIIL+K
Sbjct: 72  PLRLHMSQASEVCDSKAGADLLDIILRK 98

[Close]

BLAST of Carg22269 vs. TrEMBL
Match: tr|A0A2P4LM87|A0A2P4LM87_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_55469 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.3e-17
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 38  SKMNHYIVKQNTF--ISREETKGFASISDLKDPIVCPKPRRLAILANNHIKQPLRWHQT- 97
           SKMNH  +KQN F  +  EE +G  SISDLK P+VCPKPRR+ +LANN ++ PLRWH + 
Sbjct: 75  SKMNHCNLKQNAFSAVGSEEMRGPVSISDLKGPVVCPKPRRVGVLANNSLR-PLRWHMSH 134

Query: 98  --EFCDSKAGADLLDIILKK 113
             E CDSKAGA+LLDIIL K
Sbjct: 135 PPEVCDSKAGAELLDIILMK 153

The following BLAST results are available for this feature:

BLAST of Carg22269 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935211.1	3.7e-35	98.67	uncharacterized protein LOC111442160 [Cucurbita moschata]	[more]
XP_023528274.1	3.7e-35	98.67	uncharacterized protein LOC111791243 [Cucurbita pepo subsp. pepo]	[more]
XP_022983663.1	1.1e-34	97.33	uncharacterized protein LOC111482209 [Cucurbita maxima]	[more]
XP_008461589.1	4.9e-32	90.67	PREDICTED: uncharacterized protein LOC103500158 [Cucumis melo]	[more]
XP_022148186.1	6.5e-32	89.33	uncharacterized protein LOC111016920 [Momordica charantia]	[more]

BLAST of Carg22269 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16110.1	7.1e-17	56.25	unknown protein	[more]
AT3G02555.1	6.3e-13	51.85	unknown protein	[more]
AT1G13390.1	2.4e-12	44.74	unknown protein	[more]
AT1G68490.1	9.4e-09	41.25	unknown protein	[more]

BLAST of Carg22269 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22269 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CF27\|A0A1S3CF27_CUCME	3.3e-32	90.67	uncharacterized protein LOC103500158 OS=Cucumis melo OX=3656 GN=LOC103500158 PE=...	[more]
tr\|A0A0A0L9U7\|A0A0A0L9U7_CUCSA	5.6e-32	89.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G280930 PE=4 SV=1	[more]
tr\|Q1KUR8\|Q1KUR8_9ROSI	9.2e-19	60.92	Uncharacterized protein OS=Tarenaya spinosa OX=228870 PE=4 SV=1	[more]
tr\|Q1KUV3\|Q1KUV3_9ROSI	1.6e-18	62.50	Uncharacterized protein OS=Tarenaya spinosa OX=228870 PE=4 SV=1	[more]
tr\|A0A2P4LM87\|A0A2P4LM87_QUESU	1.3e-17	62.50	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_55469 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22269-RA	Carg22269-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33384	FAMILY NOT NAMED	coord: 40..117
None	No IPR available	PANTHER	PTHR33384:SF2	SUBFAMILY NOT NAMED	coord: 40..117

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22269	Csa3G280930	Cucumber (Chinese Long) v2	carcuB0513
Carg22269	MELO3C023804	Melon (DHL92) v3.5.1	carmeB0485
Carg22269	CSPI03G20760	Wild cucumber (PI 183967)	carcpiB0520
Carg22269	Cucsa.031330	Cucumber (Gy14) v1	carcgyB0552
Carg22269	CmaCh01G003830	Cucurbita maxima (Rimu)	carcmaB0669
Carg22269	CmoCh01G004040	Cucurbita moschata (Rifu)	carcmoB0651
Carg22269	Lsi05G003810	Bottle gourd (USVL1VR-Ls)	carlsiB435
Carg22269	Cp4.1LG03g06150	Cucurbita pepo (Zucchini)	carcpeB0673
Carg22269	MELO3C023804.2	Melon (DHL92) v3.6.1	carmedB0490
Carg22269	CsaV3_3G020680	Cucumber (Chinese Long) v3	carcucB0518
Carg22269	Bhi01G001465	Wax gourd	carwgoB0584

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22269	Carg07471	Silver-seed gourd	carcarB471

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22269	Cucumber (Gy14) v2	carcgybB0489
Carg22269	Cucurbita maxima (Rimu)	carcmaB0668
Carg22269	Cucurbita moschata (Rifu)	carcmoB0650
Carg22269	Cucurbita pepo (Zucchini)	carcpeB0672
Carg22269	Melon (DHL92) v3.6.1	carmedB0489
Carg22269	Watermelon (Charleston Gray)	carwcgB0464
Carg22269	Watermelon (97103) v1	carwmB0476
Carg22269	Watermelon (97103) v2	carwmbB0503