Lsi05G002800 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G002800
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RING/FYVE/PHD zinc finger superfamily protein
Location	chr05 : 3666389 .. 3670631 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAGTCTTTAAGAAAATTGTACTTATAGATGTTACTTTTTGAGTATCATTTCGAGCATCAGTGAAAAGTTTGTCTTTTTTCCCCTAAAAAAGACAAACTTAAAGGGATAACTATATGGAGCGTTTGATTCTTCATTTGTCCACAAACGCTATATTACATGATCTTGCTTGTTTGTCAAACTAGGATCCATTTCATTGATTAAATGGACTTCTTTCTTCTTGGAATTAGTTTTTTAATTGCTCCTCTATCTTAACTTCGGGAGAAAATAAGGAGGGAAATTAACACCTATAATTCATTAGTTTTTATTTTTGGAAGTACCTATAGCATTATGCTCAAAATAAACTTCTCAAAAGAAATAAACAGTTGCAACTGTTCTACAGCAGTTGAACTTTCTAACAGTTGATGCCCAAAAAAGTGAACAGCTCCAAGGGCCCAAACCTTTAGTTTCTTTACGTCCTTACAAGCTGGTGGAGAATCTGATTGTACATTTACACATTTTTTGCTTTCCACGGCACCTTAAATATTCAGATTTTTGTTTCCTTTTCTTTTCTTCTGCATCTGATGATTATTTATATGCAGATTAATTATTATTACATTATGTCTAATGTTCAGGTAAAATTAATGAATCTTTCTTCTTCTTCTTTTTATTTTTCTACTTTTAAAGAACTAGGGAATCAGTTGTCTCATTCCTTGCATGCTCATGGCCCACTTCATTGACTTTCGAGAAGCTTTGCCCACCCTAAAGCCAACTTTAGAAAAACAACAAGGATTTTAAATAAGTATTTTTTTTCACCTAGGAATTGAACTCGCTATCTTGGATGATATCTCCAAACATCCCAATTCCACAGCCCTTACCAGTTACACCATCGCTCCATGGGATTTAAATTCCACAAGTTTCAAAGTTTCTTTTCTTTCTCTATTTTCTGCTCTTTATCTATGAATATATTATGCTGAGAAACAATCTGAATTCCAATGGATGTTGATCACTGCAGCAAACAAAATTGATCTACATAGTTGTAAATGTTATTTGGCTCATTTTATATTACTTTATTGACATTCATTCATACCAATGTCTACTGGGTCATTGAAGAATGGGGGATCATTTTGTGCTGTTGGTGGATCAGTTGCTCACTGAATCAAACCTTGAAGCTACTATTGAGAGAAAAAACAGAATTTGTCACCCTATGGCCTCAACAAATGCAGATAATATGATATCTTCCCTAAATATTGATGTCGAATCTGTGTCACCTTCAAGTATTGTTCAGTGCAGAATTTGTCATGATGAGGATGATGACTCAAAAATGGAGACACCATGCTCTTGCTGTGGCAGCTTGAAGGTTAGATTTAGTTTAGTCAACACCAACTAGTTTTACTTGTAAAACTCAGATAGCTATTTTTGTAATCCCTCTTTTTCCAAATTGTATGGCTGGCTAAACTGGTTTCAATAATGTTCCTGTCAACATTTGCTGCATTCAGTTTAGTATCCAAATTTATCTTCTCCCCCAAATCTTTTCTCAGGATTTTATAATATGCTATAAAACACTTGCTAAGTCAGGTACCGTAATTTATATGTAGTTGTTACTAGACTGAAAAGGTTAGAATCAGATTCATGGCACAGATAGAGCATCCTGTGCTATTCTTGGTTTCCTTTCCCTTTTCAATCTTTATTCCTCCCTGTGTTCATTTAGATGGTTCACCTTGATAATTAGCTTCCAATTAGTGTTGATAATTGCAGTATGCTCATCACAAGTGCGTTCAGCGGTGGTGCAACGAGAAAGGCAATACAATCTGTGAGATTTGCCACCAGGTCTGTTATTATTATTTTTTTTCTTTCAAAAAGTCTTATTGCATGGCTAAATTTATGGTAGTAAGAAGTCTTTTTTCTTATACTGTAGGACTTTAAGCCAGGGTATACCGCACCTCCCCCTGTATTTTATTATGGAGATATTAATTCACCAATGCATTTCAGGTTATCCATTTACCTCTCATCCATAATGCATTTCATTTCACATGCAATTTCTCTAGTATACCTTGTTATTCAATTCTTGTTCATTCATTTTCTCGACAATATTGATATAACAATGCTATCATTGAATTTTGTGGTCTTAGGGGAAGTTGGGAGATGTCTAGACTGAACCTGCATGTACCTGCAGGTATGCCCAATCAAGAGTATCTAGATTCTGACTTTGATGAGTTTTTCGCTCCCTCTCCAAGAAGCATATGGTGCTGCCGCGTGGTTGCAGTAATTGTATACCCTACCTCTTCATTTTAATTCATTTCATTCAGTTTCCTTGTTTTTGTAAACAAATTTAAATGCCTTGATAATTGGCTTTACCTTCTGCAGATAAAAAAATATTACATTTTTTTGCTAGTTGATTCCTTTTAATTCGCTTGTGAAGGTCCTATAATGATGAACTTTTGTATAAGATTTTATTTTATTCTTTGCACTTTCTATAAAGACCAATTTTTTTTAATGAATTAGTTAATCTAAGCATTATTTAGATACATTTTTCTTTTACCTAAATATATCTAAATGGACAAGTGTTTGAAGTCACGTGTAGTATGTTAAATATTGGGTTGTCAAATTTTAATGATAAGAATTTACGTAGTATTTATTCTAAGTTTAGAAGATGAAATATAATATTAAAAGTTGATAGATTAAAATATAACATTTTAAAGCTTAAGGATGAGAATGAAACAAGTATCAAAGTTCATAACTAAAATAGGATTTAAACATGTATTCTCCTTGCTCATATTTGTATCATTAGGACTGTTGGATTGACCAACAATCCCCAGTTTGAAACTTCTAATCATATCTGTATATCTATTGCAGTTTATCACTCTTCTCGTTTTACGCCATACTCTACCAATTGTAATTAGTGGAACTGGAGGGTATTCATTGACATTGTTAATGGTAAGATTGTTTCTCGGTTTTCCCCATCTAGTTTTCCGTCCCTTGGCCCTTTTCCATTTTTGAGACCATTTGTATGTTTCAGTTGCTGATCTTGAGAATTGTTGGGATTCTTCTACCAATATATGTCATGGTTAAGGCATTTACTTCCATTCAACAACGGCGTCATTATCAGGTTAGTGGTGCAGTCTATATCTAGATTTGTTTTGAATAACATTTCATCATATGAACTGCTTGGATTTTCCATGGGTTGATGCAAAATAGGCTAGATATGAATTTTGTTGGGCTATTGTGTTACAACCTTATTCTCTTGTTTAACCATGTTTCTTATAATCACCGTATGTTGGTTTAATGTAGTTTTAGTGCATTTAAGCTAACCTAACTTGATCGCTCAAGGCCAACTTGAACATAGTTTAACTGGTTAATACATATGTCTCCGACCAATAAATTAGGTGTTCAAATCGTCACTCCCAAATAAATAATATCATATAAAATAGAAACTGGTCACCCATGATTTGGAAAAGAAAAATCATGTTAAGCATCCATGAGTCCATGAATATTAAATGCAAAAAGAAAAAGAAAGGTAAGAATAAATGCATCTTTTTGGTTGTTAAGTTTCAAACCCTTACCAACTAATCTTGAAGTTTTTGAAATGCTTCAAAATAGTTTCAAAGGAAAGTTGTTGGTTTGCAAAAAAGTGTCAGCTTGTCACTGGGTCCATTGTACTTTTTTTGGTACAATTTTTGGGAAAAGTAAATTATTAACAAAAAAAAAAAAACTAATAATAAAGAGAAAATAGTTTCACTGGGTCCATCCAATTGTACTTTTTTCACTCTTCAATAATAAGCTTTTTGTTTCTTAAGAGGGTAAAATGTTATGATTGTACTGTCCTATATTATAACACCAGCCATGATAAACATGTGGTAGAGAGAGCATATTTCTGAAAATTTTGTTCTCTCTAAGTTTGATGTCTAGCAGTTTACATTTAACGAATACGATGTTTGAGCCTACTCGTATTGTTTTGTTAGGCTCCCCGTCTTCACCTCACAACATCAGATGATGAAACTGACTCGACAAACCATTCTCAATCGCGCTTCATCCACGTGAGATAACAGTATATTGGCCTCGTCTCTGATATGATGGAAACGACGTAAGCATAACGACGAGATGGAATGGTTGGGTGAAATGCATAGAAGGTCATCAAACGCCTTTCACTGCGAGGAAGTTATGAGTCGCAAGGCTGCATATGGTCCTTGCAGGGAGACGATCACGACCCAGTTTCTGCAGTGAAGTTCACATCTGTGGGAAGCAGCAGAAACTTCTTTGGTTAA

mRNA sequence

TGGAGTCTTTAAGAAAATTGTACTTATAGATGTTACTTTTTGAGTATCATTTCGAGCATCAGTGAAAAGTTTGTCTTTTTTCCCCTAAAAAAGACAAACTTAAAGGGATAACTATATGGAGCGTTTGATTCTTCATTTGTCCACAAACGCTATATTACATGATCTTGCTTGTTTGTCAAACTAGGATCCATTTCATTGATTAAATGGACTTCTTTCTTCTTGGAATTAGTTTTTTAATTGCTCCTCTATCTTAACTTCGGGAGAAAATAAGGAGGGAAATTAACACCTATAATTCATTAGTTTTTATTTTTGGAAGTACCTATAGCATTATGCTCAAAATAAACTTCTCAAAAGAAATAAACAGTTGCAACTGTTCTACAGCAGTTGAACTTTCTAACAGTTGATGCCCAAAAAAGTGAACAGCTCCAAGGGCCCAAACCTTTAGTTTCTTTACGTCCTTACAAGCTGATTAATTATTATTACATTATGTCTAATGTTCAGAATGGGGGATCATTTTGTGCTGTTGGTGGATCAGTTGCTCACTGAATCAAACCTTGAAGCTACTATTGAGAGAAAAAACAGAATTTGTCACCCTATGGCCTCAACAAATGCAGATAATATGATATCTTCCCTAAATATTGATGTCGAATCTGTGTCACCTTCAAGTATTGTTCAGTGCAGAATTTGTCATGATGAGGATGATGACTCAAAAATGGAGACACCATGCTCTTGCTGTGGCAGCTTGAAGTATGCTCATCACAAGTGCGTTCAGCGGTGGTGCAACGAGAAAGGCAATACAATCTGTGAGATTTGCCACCAGGACTTTAAGCCAGGGTATACCGCACCTCCCCCTGTATTTTATTATGGAGATATTAATTCACCAATGCATTTCAGGGGAAGTTGGGAGATGTCTAGACTGAACCTGCATGTACCTGCAGGTATGCCCAATCAAGAGTATCTAGATTCTGACTTTGATGAGTTTTTCGCTCCCTCTCCAAGAAGCATATGGTGCTGCCGCGTGGTTGCATTTATCACTCTTCTCGTTTTACGCCATACTCTACCAATTGTAATTAGTGGAACTGGAGGGTATTCATTGACATTGTTAATGTTGCTGATCTTGAGAATTGTTGGGATTCTTCTACCAATATATGTCATGGTTAAGGCATTTACTTCCATTCAACAACGGCGTCATTATCAGGCTCCCCGTCTTCACCTCACAACATCAGATGATGAAACTGACTCGACAAACCATTCTCAATCGCGCTTCATCCACAAGGTCATCAAACGCCTTTCACTGCGAGGAAGTTATGAGTCGCAAGGCTGCATATGGTCCTTGCAGGGAGACGATCACGACCCAGTTTCTGCAGTGAAGTTCACATCTGTGGGAAGCAGCAGAAACTTCTTTGGTTAA

Coding sequence (CDS)

ATGTTCAGAATGGGGGATCATTTTGTGCTGTTGGTGGATCAGTTGCTCACTGAATCAAACCTTGAAGCTACTATTGAGAGAAAAAACAGAATTTGTCACCCTATGGCCTCAACAAATGCAGATAATATGATATCTTCCCTAAATATTGATGTCGAATCTGTGTCACCTTCAAGTATTGTTCAGTGCAGAATTTGTCATGATGAGGATGATGACTCAAAAATGGAGACACCATGCTCTTGCTGTGGCAGCTTGAAGTATGCTCATCACAAGTGCGTTCAGCGGTGGTGCAACGAGAAAGGCAATACAATCTGTGAGATTTGCCACCAGGACTTTAAGCCAGGGTATACCGCACCTCCCCCTGTATTTTATTATGGAGATATTAATTCACCAATGCATTTCAGGGGAAGTTGGGAGATGTCTAGACTGAACCTGCATGTACCTGCAGGTATGCCCAATCAAGAGTATCTAGATTCTGACTTTGATGAGTTTTTCGCTCCCTCTCCAAGAAGCATATGGTGCTGCCGCGTGGTTGCATTTATCACTCTTCTCGTTTTACGCCATACTCTACCAATTGTAATTAGTGGAACTGGAGGGTATTCATTGACATTGTTAATGTTGCTGATCTTGAGAATTGTTGGGATTCTTCTACCAATATATGTCATGGTTAAGGCATTTACTTCCATTCAACAACGGCGTCATTATCAGGCTCCCCGTCTTCACCTCACAACATCAGATGATGAAACTGACTCGACAAACCATTCTCAATCGCGCTTCATCCACAAGGTCATCAAACGCCTTTCACTGCGAGGAAGTTATGAGTCGCAAGGCTGCATATGGTCCTTGCAGGGAGACGATCACGACCCAGTTTCTGCAGTGAAGTTCACATCTGTGGGAAGCAGCAGAAACTTCTTTGGTTAA

Protein sequence

MFRMGDHFVLLVDQLLTESNLEATIERKNRICHPMASTNADNMISSLNIDVESVSPSSIVQCRICHDEDDDSKMETPCSCCGSLKYAHHKCVQRWCNEKGNTICEICHQDFKPGYTAPPPVFYYGDINSPMHFRGSWEMSRLNLHVPAGMPNQEYLDSDFDEFFAPSPRSIWCCRVVAFITLLVLRHTLPIVISGTGGYSLTLLMLLILRIVGILLPIYVMVKAFTSIQQRRHYQAPRLHLTTSDDETDSTNHSQSRFIHKVIKRLSLRGSYESQGCIWSLQGDDHDPVSAVKFTSVGSSRNFFG

Homology

[Close]

BLAST of Lsi05G002800 vs. Swiss-Prot
Match: MARH2_RAT (E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-07
Identity = 20/57 (35.09%), Postives = 33/57 (57.89%), Query Frame = 1


Query: 55  SPSSIVQCRICHDEDDDSKMETPCSCCGSLKYAHHKCVQRWCNEKGNTICEICHQDF 112
           +PS    CRICH+  +   + +PC C G+L   H  C+++W +    + CE+CH +F
Sbjct: 57  TPSDCPFCRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113

[Close]

BLAST of Lsi05G002800 vs. Swiss-Prot
Match: MARH2_XENLA (E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.2e-07
Identity = 18/50 (36.00%), Postives = 31/50 (62.00%), Query Frame = 1


Query: 62  CRICHDEDDDSKMETPCSCCGSLKYAHHKCVQRWCNEKGNTICEICHQDF 112
           CRICH+  +  ++ +PC C G+L   H  C+++W +    + CE+CH +F
Sbjct: 64  CRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEF 113

[Close]

BLAST of Lsi05G002800 vs. Swiss-Prot
Match: MARH2_XENTR (E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.2e-07
Identity = 18/50 (36.00%), Postives = 31/50 (62.00%), Query Frame = 1


Query: 62  CRICHDEDDDSKMETPCSCCGSLKYAHHKCVQRWCNEKGNTICEICHQDF 112
           CRICH+  +  ++ +PC C G+L   H  C+++W +    + CE+CH +F
Sbjct: 64  CRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEF 113

[Close]

BLAST of Lsi05G002800 vs. Swiss-Prot
Match: MARH2_MOUSE (E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.5e-07
Identity = 20/57 (35.09%), Postives = 32/57 (56.14%), Query Frame = 1


Query: 55  SPSSIVQCRICHDEDDDSKMETPCSCCGSLKYAHHKCVQRWCNEKGNTICEICHQDF 112
           S S    CRICH+  +   + +PC C G+L   H  C+++W +    + CE+CH +F
Sbjct: 57  SQSDCPFCRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113

[Close]

BLAST of Lsi05G002800 vs. Swiss-Prot
Match: MARH9_HUMAN (E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-06
Identity = 19/48 (39.58%), Postives = 31/48 (64.58%), Query Frame = 1


Query: 61  QCRICHDEDDDSKMETPCSCCGSLKYAHHKCVQRWCNEKGNTICEICH 109
           QCRIC    +  ++ +PC C GS++  H  C+ RW +E+G+  CE+C+
Sbjct: 109 QCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCY 156

[Close]

BLAST of Lsi05G002800 vs. TrEMBL
Match: A0A0A0LBM8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G186720 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 1.3e-127
Identity = 230/261 (88.12%), Postives = 239/261 (91.57%), Query Frame = 1


Query: 4   MGDHFVLLVDQLLTESNLEATIERKNRICHPMASTNA--DNMISSLNIDVESVSPSSIVQ 63
           MGDHF LLVDQLLTESNLEATIERKNRICHPMASTNA  DNMISS NIDVESVSPSSIVQ
Sbjct: 1   MGDHFGLLVDQLLTESNLEATIERKNRICHPMASTNANADNMISSSNIDVESVSPSSIVQ 60

Query: 64  CRICHDEDDDSKMETPCSCCGSLKYAHHKCVQRWCNEKGNTICEICHQDFKPGYTAPPPV 123
           CRICHDEDD SKMETPCSCCGSLKYAH KC+QRWCNEKG+TICEICHQDFKPGYT+PPPV
Sbjct: 61  CRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDFKPGYTSPPPV 120

Query: 124 FYYGDINSPMHFRGSWEMSRLNLHVPAGMPNQEYLDSDFDEFFAPSPRSIWCCRVVA--F 183
           FYYGDINSP+HFRGSWEMSRLNLHVPAGMP+ EYLDSDFD+FFAPSPRSI CCRVVA  F
Sbjct: 121 FYYGDINSPIHFRGSWEMSRLNLHVPAGMPDHEYLDSDFDDFFAPSPRSILCCRVVAVIF 180

Query: 184 ITLLVLRHTLPIVISGTGGYSLTLLMLLILRIVGILLPIYVMVKAFTSIQQRRHYQAPRL 243
           I LLVLRHTLPIVISG GGYS TLLMLLILRIVGILLPIYVMVKAFT IQ+R  YQAPRL
Sbjct: 181 IALLVLRHTLPIVISGAGGYSWTLLMLLILRIVGILLPIYVMVKAFTYIQRRHRYQAPRL 240

Query: 244 HLTTSDDETDSTNHSQSRFIH 261
            LTT  D ++STNHSQS  IH
Sbjct: 241 QLTTLGDNSESTNHSQSHLIH 261

[Close]

BLAST of Lsi05G002800 vs. TrEMBL
Match: A0A061EGA0_THECC (RING/FYVE/PHD zinc finger superfamily protein OS=Theobroma cacao GN=TCM_019300 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.6e-85
Identity = 172/272 (63.24%), Postives = 211/272 (77.57%), Query Frame = 1


Query: 4   MGDHFVLLVDQLLTESNLEATIERKNRICHPMASTNADNMI--SSLNIDVESV--SPSSI 63
           MGDHFVLLVD+LLTES LEA IE KN+    M+S + D+MI  SS  +D E+V  SPS +
Sbjct: 1   MGDHFVLLVDRLLTESTLEAAIESKNQSQQGMSSASKDDMIEFSSHRMD-ENVGSSPSKL 60

Query: 64  VQCRICHDEDDDSKMETPCSCCGSLKYAHHKCVQRWCNEKGNTICEICHQDFKPGYTAPP 123
           V+CRICHDED+D  ME PCSC GSLKYAH KCVQRWCNEKG+TICEICHQ F+PGYTAPP
Sbjct: 61  VECRICHDEDEDLNMEIPCSCRGSLKYAHRKCVQRWCNEKGDTICEICHQQFRPGYTAPP 120

Query: 124 PVFYYGDINSPMHFRGSWEMSRLNLHVPAGM----PNQEYLDSDFDEFFAPSPRSIWCCR 183
           P+F+YG +  PM+FRG+WE+SR +L  P  +     ++++L+SDFD++ APS RS+ CCR
Sbjct: 121 PLFHYGGV--PMNFRGNWEISRRDLPAPRFITMVTTDRDFLESDFDDYSAPSSRSLICCR 180

Query: 184 VVA--FITLLVLRHTLPIVISGTGGYSLTLLMLLILRIVGILLPIYVMVKAFTSIQQRRH 243
           V+A  F+ LLVLRHTLPI+ISG G YSLTL  LL+LR VGILLPIY+MVKAFT+IQ+RRH
Sbjct: 181 VIAIIFMVLLVLRHTLPIIISGAGDYSLTLFTLLMLRTVGILLPIYIMVKAFTAIQRRRH 240

Query: 244 YQAPRLHLTTSDDETDSTNHSQ--SRFIHKVI 264
           +Q PR  L  SD+E++     Q  SRFI  VI
Sbjct: 241 HQDPRFSLAASDEESELPQLQQPHSRFIGDVI 269

[Close]

BLAST of Lsi05G002800 vs. TrEMBL
Match: A0A067JFQ8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02514 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 6.6e-84
Identity = 163/268 (60.82%), Postives = 200/268 (74.63%), Query Frame = 1


Query: 4   MGDHFVLLVDQLLTESNLEATIERKNRICHPMASTNADNMIS----SLNIDVESVSPSSI 63
           MGDHFVLLVD+LLTES LEA IER +       S + D         +++D  S S S +
Sbjct: 1   MGDHFVLLVDRLLTESTLEAAIERNSHWQQATRSASGDTTTDFSPDRMDLDFRS-SSSKL 60

Query: 64  VQCRICHDEDDDSKMETPCSCCGSLKYAHHKCVQRWCNEKGNTICEICHQDFKPGYTAPP 123
           V+CRICHDED+D  ME PCSCCGSLKYAH KCVQRWCNEKG+T+CEICHQ FKPGYTAPP
Sbjct: 61  VECRICHDEDEDMNMEVPCSCCGSLKYAHRKCVQRWCNEKGDTVCEICHQQFKPGYTAPP 120

Query: 124 PVFYYGDINSPMHFRGSWEMSRLNLHVPAGM----PNQEYLDSDFDEFFAPSPRSIWCCR 183
           P+F+YG I  PM+FRG+WE++R +L+ P  +     +++++ SDF+++ APSPRS+ CCR
Sbjct: 121 PLFHYGGI--PMNFRGNWEITRRDLNNPGFIAMVTTDRDFVGSDFEDYSAPSPRSLMCCR 180

Query: 184 VVA--FITLLVLRHTLPIVISGTGGYSLTLLMLLILRIVGILLPIYVMVKAFTSIQQRRH 243
           +VA  F+ LLVLRHTLPI+ISG G YS TL MLLILR +GILLPIYVMVKAFT+IQ+RRH
Sbjct: 181 IVAIIFMVLLVLRHTLPIIISGAGDYSTTLFMLLILRTIGILLPIYVMVKAFTAIQRRRH 240

Query: 244 YQAPRLHLTTSDDETDSTN-HSQSRFIH 261
            Q PR  L  SD E +      QSRF+H
Sbjct: 241 QQDPRFSLAASDGENELPQLQPQSRFVH 265

[Close]

BLAST of Lsi05G002800 vs. TrEMBL
Match: M5WTM7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010144mg PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 5.6e-83
Identity = 160/253 (63.24%), Postives = 191/253 (75.49%), Query Frame = 1


Query: 4   MGDHFVLLVDQLLTESNLEATIERKNRICHPMASTNADNMISSLNIDVESVSPSSIVQCR 63
           MGDHFVL VD+L+TES LEA IE   ++ HP  + + D M SS  IDV   S S  VQCR
Sbjct: 1   MGDHFVLFVDRLITESTLEAVIESTYQLQHPTLTASQDTMDSSHKIDVNGSSSSKFVQCR 60

Query: 64  ICHDEDDDSKMETPCSCCGSLKYAHHKCVQRWCNEKGNTICEICHQDFKPGYTAPPPVFY 123
           ICHDEDDDS METPCSCCGSLKYAH KCVQRWCNEKG+TICEICHQ F P YTAPPP+F+
Sbjct: 61  ICHDEDDDSNMETPCSCCGSLKYAHRKCVQRWCNEKGDTICEICHQQFTPDYTAPPPLFH 120

Query: 124 YGDINSPMHFRGSWEMSRLNLHVPAGM----PNQEYLDSDF-DEFFAPSPRSIWCCRVVA 183
           Y  I  PM+FRG+WE+SR +L  P  +     + EY+++DF DE+ APS RS+ CCRVVA
Sbjct: 121 YSGI--PMNFRGNWEISRRDLQNPQFIAMVTADHEYMNTDFDDEYSAPSSRSLICCRVVA 180

Query: 184 --FITLLVLRHTLPIVISGTGGYSLTLLMLLILRIVGILLPIYVMVKAFTSIQQRRHYQA 243
             F+ LLVLRHTLP +ISG G YSLTL  LL+LR +GIL PIY+MV+AFT+IQ++R  Q 
Sbjct: 181 IIFMVLLVLRHTLPFLISGAGEYSLTLFTLLMLRTIGILFPIYIMVRAFTAIQRQRRQQD 240

Query: 244 PRLHLTTSDDETD 250
           P + L TSD+E D
Sbjct: 241 PEISLATSDEEND 251

[Close]

BLAST of Lsi05G002800 vs. TrEMBL
Match: B9H350_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s09240g PE=4 SV=2)

HSP 1 Score: 309.3 bits (791), Expect = 5.2e-81
Identity = 161/268 (60.07%), Postives = 198/268 (73.88%), Query Frame = 1


Query: 4   MGDHFVLLVDQLLTESNLEATIERKNRICHPMASTNADNMISS----LNIDVESVSPSSI 63
           MGDHFV LVD+LLTES LEA IE +NR+   MAS + +N        +++++ S++  S 
Sbjct: 1   MGDHFVFLVDRLLTESTLEAAIESQNRLRQTMASASKENTKEFSPHWMDLELTSLAGKS- 60

Query: 64  VQCRICHDEDDDSKMETPCSCCGSLKYAHHKCVQRWCNEKGNTICEICHQDFKPGYTAPP 123
           V+CRICH+E+DD  ME PCSC GSLKYAH KCVQRWCNEKGNTICEICHQ F+PGYTAPP
Sbjct: 61  VECRICHEEEDDMNMEMPCSCRGSLKYAHRKCVQRWCNEKGNTICEICHQQFEPGYTAPP 120

Query: 124 PVFYYGDINSPMHFRGSWEMSRLNLHVPAGM----PNQEYLDSDFDEFFAPSPRSIWCCR 183
           P+F YG I  PM+FRG+WE+ R +LH P  +     + E+LDSDFDE+ APSPRS+ CCR
Sbjct: 121 PLFCYGAI--PMNFRGNWEIPRRDLHNPPSIAMVTTDHEFLDSDFDEYSAPSPRSVMCCR 180

Query: 184 VVA--FITLLVLRHTLPIVISGTGGYSLTLLMLLILRIVGILLPIYVMVKAFTSIQQRRH 243
           ++A  F+ LLVLRHTL I+ISG G YS+TL MLLILR VGILLP+YVMV+AFT+IQ R  
Sbjct: 181 IIAIIFMVLLVLRHTLAILISGAGDYSMTLFMLLILRTVGILLPVYVMVRAFTAIQHRGR 240

Query: 244 YQAPRLHLTTSDDETDSTN-HSQSRFIH 261
            Q P   L  SD+E +     + SR IH
Sbjct: 241 QQDPHFPLAESDEENELPQLQTHSRIIH 265

[Close]

BLAST of Lsi05G002800 vs. TAIR10
Match: AT2G01275.1 (AT2G01275.1 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 223.4 bits (568), Expect = 1.9e-58
Identity = 119/254 (46.85%), Postives = 163/254 (64.17%), Query Frame = 1


Query: 4   MGDHFVLLVDQLLTESNLEATIERKNRICHPMASTNADNMISSLNIDVESVSPSSIVQCR 63
           MGDHFVLLVD+L+TES +EA I+ +N++           ++    +++      S+ +CR
Sbjct: 1   MGDHFVLLVDRLITESTIEAAIQSRNQMLQANIPVEECTILDDKTLEMLRNGDLSMAECR 60

Query: 64  ICHDEDDDSKMETPCSCCGSLKYAHHKCVQRWCNEKGNTICEICHQDFKPGYTAPPPVFY 123
           ICHDED DS METPCSC GS+KYAH +CVQRWCNEKG+T CEICHQ+FKP YTAPPP+  
Sbjct: 61  ICHDEDLDSNMETPCSCSGSVKYAHRRCVQRWCNEKGDTTCEICHQEFKPDYTAPPPLLE 120

Query: 124 YGDINSPMHFRGSWEMSRLNLHVPAGMP-NQEYLDSDFDEFFAPSPRSIWCCR--VVAFI 183
            G +  P+HFRG+W +S+        +P +  ++D  +      S  S  CCR  V+ F+
Sbjct: 121 LGHV--PLHFRGNWGISQREHRFITVVPADSTFIDQPYP---LSSTTSFICCRSLVLIFM 180

Query: 184 TLLVLRHTLPIVISGTGGYSLTLLMLLILRIVGILLPIYVMVKAFTSIQQRRHYQAPRLH 243
            LL+LRHTLP+V++G+  +   L  LL LRI+GI+LPIYV+ KA  +   RRH +   L 
Sbjct: 181 ALLILRHTLPLVLTGSNLHVFPLFTLLFLRILGIMLPIYVVTKAVATC--RRHSRT--LD 240

Query: 244 LTTSDDETDSTNHS 255
            + SDD +D    S
Sbjct: 241 TSPSDDSSDEETDS 245

[Close]

BLAST of Lsi05G002800 vs. TAIR10
Match: AT5G38070.1 (AT5G38070.1 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-55
Identity = 116/247 (46.96%), Postives = 160/247 (64.78%), Query Frame = 1


Query: 4   MGDHFVLLVDQLLTESNLEATIERKNRICHPMASTNADNMISSLNIDVESVSPSSIVQCR 63
           MGDH VL+VD+L ++S L       NR      S N D +  S++   + +  S  VQCR
Sbjct: 1   MGDHLVLVVDRLSSDSGLGTV----NRADPKADSVNEDGVSESISAGAD-LCESKFVQCR 60

Query: 64  ICHDEDDDSKMETPCSCCGSLKYAHHKCVQRWCNEKGNTICEICHQDFKPGYTAPPPVFY 123
           ICHDED+D+ M+TPCSC G+LK+AHH CVQRWCNEKG+T+CEIC Q +KPGYTAP  +F+
Sbjct: 61  ICHDEDEDTNMDTPCSCSGTLKFAHHNCVQRWCNEKGDTVCEICRQQYKPGYTAPRQLFH 120

Query: 124 YGDINSPMHFRGSWEMSRLNLHVPAGMPNQEYLDSDFDEFFAPSPRSIWCCRVVA--FIT 183
           Y  I+  M+F   W +  L+L  P  +   +  D D D +   SP S+ CCR++A  F+ 
Sbjct: 121 YTGIS--MNFGSDWGIEGLDLRNPYFLTWGD-ADDDHDLYSFHSPTSLICCRLIALLFVL 180

Query: 184 LLVLRHTLPIVISGTGGYSLTLLMLLILRIVGILLPIYVMVKAFTSIQQRRHYQAPRLHL 243
           LL LRH+LP+++ G   +S+TLLML ++R +GILL  YV  K+F  IQ+ R  +  RL  
Sbjct: 181 LLFLRHSLPVLLGGVDDFSITLLMLPLVRTLGILLIAYVFFKSFIVIQRCRQERDTRLSG 239

Query: 244 TTSDDET 249
            +SD+ET
Sbjct: 241 FSSDEET 239

[Close]

BLAST of Lsi05G002800 vs. TAIR10
Match: AT1G14260.1 (AT1G14260.1 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 141.7 bits (356), Expect = 7.3e-34
Identity = 86/208 (41.35%), Postives = 115/208 (55.29%), Query Frame = 1


Query: 40  ADNMISSLNIDV----ESVSPSSIVQCRICHDEDDDSKMETPCSCCGSLKYAHHKCVQRW 99
           ADN I   + D     E  S  S  +CRIC DE D   +E+PC+C GSLKYAH KCVQRW
Sbjct: 31  ADNAIDIYDGDTTENEEEDSLISSAECRICQDECDIKNLESPCACNGSLKYAHRKCVQRW 90

Query: 100 CNEKGNTICEICHQDFKPGYTAPPPVFYYGDINSPMHFRGSWEMSRLNLHVP----AGMP 159
           CNEKGNTICEICHQ ++ GYT+PPP     +  + +   G W +S L+L  P        
Sbjct: 91  CNEKGNTICEICHQPYQAGYTSPPPPPQSEE--TTIDIGGGWRISGLDLDDPRLLAIAEA 150

Query: 160 NQEYLDSDFDEFFAPSPRSIWCCRVVAFI--TLLVLRH--TLPIVISGTGGYSLTLLMLL 219
            ++ L+S++D++ A         R  A I  TLL+LRH  T+P           ++L L 
Sbjct: 151 ERQILESEYDDYTASDTSGAAFFRSAALILMTLLLLRHALTIPDYSDSEDDDPSSILSLF 210

Query: 220 ILRIVGILLPIYVMVKAFTSIQQRRHYQ 236
           +LR    LLP Y+M  A + + +RR  Q
Sbjct: 211 LLRAASFLLPCYIMASAISILHRRRQRQ 236

[Close]

BLAST of Lsi05G002800 vs. TAIR10
Match: AT1G02610.1 (AT1G02610.1 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 136.7 bits (343), Expect = 2.3e-32
Identity = 78/196 (39.80%), Postives = 112/196 (57.14%), Query Frame = 1


Query: 52  ESVSPSSIVQCRICHDEDDDSKMETPCSCCGSLKYAHHKCVQRWCNEKGNTICEICHQDF 111
           E+   SS  +CRICH+E+ +S  E PCSC G++K+AH  C+QRWC+EKGNTICEIC Q++
Sbjct: 10  ETYLKSSFNRCRICHEEEAESYFEAPCSCSGTIKFAHRDCIQRWCDEKGNTICEICLQEY 69

Query: 112 KPGYTAPPPVFYYGDINSPMHFRGSWEMSRLNLHV----------PAGMPNQEYLDSDFD 171
           KPGYT           + P  F  +    R NLH+             + N+E  +SDF 
Sbjct: 70  KPGYTT---------TSKPSRFIETAVTIRDNLHIMRRENGRRRRNRRLVNRE--ESDFQ 129

Query: 172 EFFAPSPRSIWCCRVVA--FITLLVLRHTLPIVISGTGGYSLTLLMLLILRIVGILLPIY 231
           E  +   R   CCR +A  F  +L+++H    V  GT  Y  T+  +L L+ +GILLP+ 
Sbjct: 130 ECNSGVDRGASCCRYLALIFSVILLIKHAFDAVY-GTEEYPYTIFTVLTLKAIGILLPML 189

Query: 232 VMVKAFTSIQQRRHYQ 236
           V+++  T+IQ+   YQ
Sbjct: 190 VIIRTITAIQRSLRYQ 193

[Close]

BLAST of Lsi05G002800 vs. TAIR10
Match: AT2G02960.5 (AT2G02960.5 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 136.0 bits (341), Expect = 4.0e-32
Identity = 67/137 (48.91%), Postives = 85/137 (62.04%), Query Frame = 1


Query: 61  QCRICHDEDDDSKMETPCSCCGSLKYAHHKCVQRWCNEKGNTICEICHQDFKPGYTAPPP 120
           +CRIC DE     +E+PC+C GSLKYAH KCVQRWCNEKGN ICEICHQ ++PGYTAPPP
Sbjct: 42  ECRICSDESPVENLESPCACSGSLKYAHRKCVQRWCNEKGNIICEICHQPYQPGYTAPPP 101

Query: 121 VFYYGDINSPMHFRGSWEMSRLNLHVP----AGMPNQEYLDSDFDEFFAPSPRSIWCCRV 180
                +  + +   G W +S L++H P         + YL+S++ E+ A S      CR 
Sbjct: 102 PLQPEE--TTIDIGGGWTISGLDVHDPRLLAIAEAERRYLESEYVEYTASSASGAAFCRS 161

Query: 181 VAFI--TLLVLRHTLPI 192
            A I   LL+LRH L I
Sbjct: 162 AALILMALLLLRHALTI 176

[Close]

BLAST of Lsi05G002800 vs. NCBI nr
Match: gi|778679853|ref|XP_004140823.2| (PREDICTED: E3 ubiquitin-protein ligase MARCH2-like [Cucumis sativus])

HSP 1 Score: 464.2 bits (1193), Expect = 1.8e-127
Identity = 230/261 (88.12%), Postives = 239/261 (91.57%), Query Frame = 1


Query: 4   MGDHFVLLVDQLLTESNLEATIERKNRICHPMASTNA--DNMISSLNIDVESVSPSSIVQ 63
           MGDHF LLVDQLLTESNLEATIERKNRICHPMASTNA  DNMISS NIDVESVSPSSIVQ
Sbjct: 1   MGDHFGLLVDQLLTESNLEATIERKNRICHPMASTNANADNMISSSNIDVESVSPSSIVQ 60

Query: 64  CRICHDEDDDSKMETPCSCCGSLKYAHHKCVQRWCNEKGNTICEICHQDFKPGYTAPPPV 123
           CRICHDEDD SKMETPCSCCGSLKYAH KC+QRWCNEKG+TICEICHQDFKPGYT+PPPV
Sbjct: 61  CRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDFKPGYTSPPPV 120

Query: 124 FYYGDINSPMHFRGSWEMSRLNLHVPAGMPNQEYLDSDFDEFFAPSPRSIWCCRVVA--F 183
           FYYGDINSP+HFRGSWEMSRLNLHVPAGMP+ EYLDSDFD+FFAPSPRSI CCRVVA  F
Sbjct: 121 FYYGDINSPIHFRGSWEMSRLNLHVPAGMPDHEYLDSDFDDFFAPSPRSILCCRVVAVIF 180

Query: 184 ITLLVLRHTLPIVISGTGGYSLTLLMLLILRIVGILLPIYVMVKAFTSIQQRRHYQAPRL 243
           I LLVLRHTLPIVISG GGYS TLLMLLILRIVGILLPIYVMVKAFT IQ+R  YQAPRL
Sbjct: 181 IALLVLRHTLPIVISGAGGYSWTLLMLLILRIVGILLPIYVMVKAFTYIQRRHRYQAPRL 240

Query: 244 HLTTSDDETDSTNHSQSRFIH 261
            LTT  D ++STNHSQS  IH
Sbjct: 241 QLTTLGDNSESTNHSQSHLIH 261

[Close]

BLAST of Lsi05G002800 vs. NCBI nr
Match: gi|1009128326|ref|XP_015881170.1| (PREDICTED: uncharacterized protein LOC107417121 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 335.1 bits (858), Expect = 1.3e-88
Identity = 171/262 (65.27%), Postives = 203/262 (77.48%), Query Frame = 1


Query: 4   MGDHFVLLVDQLLTESNLEATIERKNRICHPMASTNADNMISSLNIDVESVSPSSIVQCR 63
           MGDHFVLLVD+LLTES LEA IE K+    P  S + DNMISS  IDV   SP  +V+CR
Sbjct: 1   MGDHFVLLVDRLLTESTLEAAIESKSWSQQPTISKSQDNMISSHKIDVNMRSPCKLVECR 60

Query: 64  ICHDEDDDSKMETPCSCCGSLKYAHHKCVQRWCNEKGNTICEICHQDFKPGYTAPPPVFY 123
           ICHDED+ S METPCSCCGSLKYAH KCVQRWCNEKG+TICEIC Q F+PGYTAPPP+F+
Sbjct: 61  ICHDEDEASNMETPCSCCGSLKYAHRKCVQRWCNEKGDTICEICRQQFRPGYTAPPPLFH 120

Query: 124 YGDINSPMHFRGSWEMSRLNLHVPAGM----PNQEYLDSDFDEFFAPSPRSIWCCRVVA- 183
           YG I  PM+FRG+WE+SR +LH P  +      ++Y+D+DFDE+ APS RS+ CCR+VA 
Sbjct: 121 YGGI--PMNFRGNWEVSRRDLHNPGFIAMVSAERDYMDTDFDEYAAPSSRSLICCRIVAI 180

Query: 184 -FITLLVLRHTLPIVISGTGGYSLTLLMLLILRIVGILLPIYVMVKAFTSIQQRRHYQAP 243
            F+ LLVLRHTLPI+ISG G YS+TL  LL+LR +GILLP+Y+MVKAFT+IQ+RRH Q  
Sbjct: 181 IFMVLLVLRHTLPIIISGAGEYSMTLFTLLMLRTIGILLPVYIMVKAFTAIQRRRHRQDS 240

Query: 244 RLHLTTSDDETDSTNHSQSRFI 260
            L L TSD+E DS    Q RFI
Sbjct: 241 HLPLATSDEENDSP-LPQPRFI 259

[Close]

BLAST of Lsi05G002800 vs. NCBI nr
Match: gi|590652324|ref|XP_007033119.1| (RING/FYVE/PHD zinc finger superfamily protein [Theobroma cacao])

HSP 1 Score: 324.3 bits (830), Expect = 2.2e-85
Identity = 172/272 (63.24%), Postives = 211/272 (77.57%), Query Frame = 1


Query: 4   MGDHFVLLVDQLLTESNLEATIERKNRICHPMASTNADNMI--SSLNIDVESV--SPSSI 63
           MGDHFVLLVD+LLTES LEA IE KN+    M+S + D+MI  SS  +D E+V  SPS +
Sbjct: 1   MGDHFVLLVDRLLTESTLEAAIESKNQSQQGMSSASKDDMIEFSSHRMD-ENVGSSPSKL 60

Query: 64  VQCRICHDEDDDSKMETPCSCCGSLKYAHHKCVQRWCNEKGNTICEICHQDFKPGYTAPP 123
           V+CRICHDED+D  ME PCSC GSLKYAH KCVQRWCNEKG+TICEICHQ F+PGYTAPP
Sbjct: 61  VECRICHDEDEDLNMEIPCSCRGSLKYAHRKCVQRWCNEKGDTICEICHQQFRPGYTAPP 120

Query: 124 PVFYYGDINSPMHFRGSWEMSRLNLHVPAGM----PNQEYLDSDFDEFFAPSPRSIWCCR 183
           P+F+YG +  PM+FRG+WE+SR +L  P  +     ++++L+SDFD++ APS RS+ CCR
Sbjct: 121 PLFHYGGV--PMNFRGNWEISRRDLPAPRFITMVTTDRDFLESDFDDYSAPSSRSLICCR 180

Query: 184 VVA--FITLLVLRHTLPIVISGTGGYSLTLLMLLILRIVGILLPIYVMVKAFTSIQQRRH 243
           V+A  F+ LLVLRHTLPI+ISG G YSLTL  LL+LR VGILLPIY+MVKAFT+IQ+RRH
Sbjct: 181 VIAIIFMVLLVLRHTLPIIISGAGDYSLTLFTLLMLRTVGILLPIYIMVKAFTAIQRRRH 240

Query: 244 YQAPRLHLTTSDDETDSTNHSQ--SRFIHKVI 264
           +Q PR  L  SD+E++     Q  SRFI  VI
Sbjct: 241 HQDPRFSLAASDEESELPQLQQPHSRFIGDVI 269

[Close]

BLAST of Lsi05G002800 vs. NCBI nr
Match: gi|802761989|ref|XP_012089929.1| (PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas])

HSP 1 Score: 318.9 bits (816), Expect = 9.4e-84
Identity = 163/268 (60.82%), Postives = 200/268 (74.63%), Query Frame = 1


Query: 4   MGDHFVLLVDQLLTESNLEATIERKNRICHPMASTNADNMIS----SLNIDVESVSPSSI 63
           MGDHFVLLVD+LLTES LEA IER +       S + D         +++D  S S S +
Sbjct: 1   MGDHFVLLVDRLLTESTLEAAIERNSHWQQATRSASGDTTTDFSPDRMDLDFRS-SSSKL 60

Query: 64  VQCRICHDEDDDSKMETPCSCCGSLKYAHHKCVQRWCNEKGNTICEICHQDFKPGYTAPP 123
           V+CRICHDED+D  ME PCSCCGSLKYAH KCVQRWCNEKG+T+CEICHQ FKPGYTAPP
Sbjct: 61  VECRICHDEDEDMNMEVPCSCCGSLKYAHRKCVQRWCNEKGDTVCEICHQQFKPGYTAPP 120

Query: 124 PVFYYGDINSPMHFRGSWEMSRLNLHVPAGM----PNQEYLDSDFDEFFAPSPRSIWCCR 183
           P+F+YG I  PM+FRG+WE++R +L+ P  +     +++++ SDF+++ APSPRS+ CCR
Sbjct: 121 PLFHYGGI--PMNFRGNWEITRRDLNNPGFIAMVTTDRDFVGSDFEDYSAPSPRSLMCCR 180

Query: 184 VVA--FITLLVLRHTLPIVISGTGGYSLTLLMLLILRIVGILLPIYVMVKAFTSIQQRRH 243
           +VA  F+ LLVLRHTLPI+ISG G YS TL MLLILR +GILLPIYVMVKAFT+IQ+RRH
Sbjct: 181 IVAIIFMVLLVLRHTLPIIISGAGDYSTTLFMLLILRTIGILLPIYVMVKAFTAIQRRRH 240

Query: 244 YQAPRLHLTTSDDETDSTN-HSQSRFIH 261
            Q PR  L  SD E +      QSRF+H
Sbjct: 241 QQDPRFSLAASDGENELPQLQPQSRFVH 265

[Close]

BLAST of Lsi05G002800 vs. NCBI nr
Match: gi|645246371|ref|XP_008229323.1| (PREDICTED: uncharacterized protein LOC103328694 [Prunus mume])

HSP 1 Score: 317.8 bits (813), Expect = 2.1e-83
Identity = 161/253 (63.64%), Postives = 191/253 (75.49%), Query Frame = 1


Query: 4   MGDHFVLLVDQLLTESNLEATIERKNRICHPMASTNADNMISSLNIDVESVSPSSIVQCR 63
           MGDHFVL VD+L+TES LEA IE   ++ HP  + + D M SS  IDV   S S  VQCR
Sbjct: 1   MGDHFVLFVDRLITESTLEAVIESTYQLQHPTLTASQDTMDSSHKIDVNGSSSSKFVQCR 60

Query: 64  ICHDEDDDSKMETPCSCCGSLKYAHHKCVQRWCNEKGNTICEICHQDFKPGYTAPPPVFY 123
           ICHDEDDDS METPCSCCGSLKYAH KCVQRWCNEKG+TICEICHQ F P YTAPPP+FY
Sbjct: 61  ICHDEDDDSNMETPCSCCGSLKYAHRKCVQRWCNEKGDTICEICHQQFTPDYTAPPPLFY 120

Query: 124 YGDINSPMHFRGSWEMSRLNLHVPAGM----PNQEYLDSDF-DEFFAPSPRSIWCCRVVA 183
           Y  I  PM+FRG+WE+SR +L  P  +     + EY+++DF DE+ APS RS+ CCRVVA
Sbjct: 121 YSGI--PMNFRGNWEISRRDLQNPQFIAMVTADHEYMNTDFDDEYSAPSSRSLICCRVVA 180

Query: 184 --FITLLVLRHTLPIVISGTGGYSLTLLMLLILRIVGILLPIYVMVKAFTSIQQRRHYQA 243
             F+ LLVLRHTLP +ISG G YSLTL  LL+LR +GIL PIY+MV+AFT+IQ++R  Q 
Sbjct: 181 IIFMVLLVLRHTLPFLISGAGEYSLTLFTLLMLRTIGILFPIYIMVRAFTAIQRQRRQQD 240

Query: 244 PRLHLTTSDDETD 250
           P + L TSD+E D
Sbjct: 241 PEISLATSDEEND 251

The following BLAST results are available for this feature:

BLAST of Lsi05G002800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MARH2_RAT	1.4e-07	35.09	E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2 PE=1 SV=1	[more]
MARH2_XENLA	4.2e-07	36.00	E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2 SV=1	[more]
MARH2_XENTR	4.2e-07	36.00	E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2 PE=2 SV=1	[more]
MARH2_MOUSE	5.5e-07	35.09	E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2 SV=1	[more]
MARH9_HUMAN	3.5e-06	39.58	E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1 SV=2	[more]

BLAST of Lsi05G002800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBM8_CUCSA	1.3e-127	88.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G186720 PE=4 SV=1	[more]
A0A061EGA0_THECC	1.6e-85	63.24	RING/FYVE/PHD zinc finger superfamily protein OS=Theobroma cacao GN=TCM_019300 P...	[more]
A0A067JFQ8_JATCU	6.6e-84	60.82	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02514 PE=4 SV=1	[more]
M5WTM7_PRUPE	5.6e-83	63.24	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010144mg PE=4 SV=1	[more]
B9H350_POPTR	5.2e-81	60.07	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s09240g PE=4 SV=2	[more]

BLAST of Lsi05G002800 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01275.1	1.9e-58	46.85	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G38070.1	1.2e-55	46.96	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT1G14260.1	7.3e-34	41.35	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT1G02610.1	2.3e-32	39.80	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G02960.5	4.0e-32	48.91	RING/FYVE/PHD zinc finger superfamily protein	[more]

BLAST of Lsi05G002800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778679853\|ref\|XP_004140823.2\|	1.8e-127	88.12	PREDICTED: E3 ubiquitin-protein ligase MARCH2-like [Cucumis sativus]	[more]
gi\|1009128326\|ref\|XP_015881170.1\|	1.3e-88	65.27	PREDICTED: uncharacterized protein LOC107417121 isoform X1 [Ziziphus jujuba]	[more]
gi\|590652324\|ref\|XP_007033119.1\|	2.2e-85	63.24	RING/FYVE/PHD zinc finger superfamily protein [Theobroma cacao]	[more]
gi\|802761989\|ref\|XP_012089929.1\|	9.4e-84	60.82	PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]	[more]
gi\|645246371\|ref\|XP_008229323.1\|	2.1e-83	63.64	PREDICTED: uncharacterized protein LOC103328694 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR022143	DUF3675
IPR013083	Znf_RING/FYVE/PHD
IPR011016	Znf_RING-CH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009840	chloroplastic endopeptidase Clp complex
cellular_component	GO:0009534	chloroplast thylakoid
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0004252	serine-type endopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G002800.1	Lsi05G002800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 62..107 score: 6.3
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 61..108 score: 5.1
IPR011016	Zinc finger, RING-CH-type	PROFILE	PS51292	ZF_RING_CH	coord: 54..114 score: 22
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 60..112 score: 5.4
IPR022143	Protein of unknown function DUF3675	PFAM	PF12428	DUF3675	coord: 113..224 score: 2.3
None	No IPR available	PANTHER	PTHR23012:SF89	SUBFAMILY NOT NAMED	coord: 36..289 score: 1.9E
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 58..112 score: 2.68

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G002800	Csa3G186720	Cucumber (Chinese Long) v2	culsiB211
Lsi05G002800	CSPI03G17600	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G002800	Cucsa.108460	Cucumber (Gy14) v1	cgylsiB144
Lsi05G002800	CmaCh14G008610	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G002800	CmaCh01G003430	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G002800	CmoCh01G003610	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G002800	CmoCh14G008760	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G002800	Cla013150	Watermelon (97103) v1	lsiwmB361
Lsi05G002800	MELO3C020316	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G002800	ClCG05G010750	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G002800	MELO3C020316.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G002800	Cla97C05G093070	Watermelon (97103) v2	lsiwmbB329
Lsi05G002800	Bhi01G001326	Wax gourd	lsiwgoB431
Lsi05G002800	Cp4.1LG03g05790	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G002800	Cp4.1LG02g16870	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G002800	CsGy3G017650	Cucumber (Gy14) v2	cgyblsiB198
Lsi05G002800	Carg24234	Silver-seed gourd	carlsiB158
Lsi05G002800	Carg07435	Silver-seed gourd	carlsiB700
Lsi05G002800	CsaV3_3G017780	Cucumber (Chinese Long) v3	cuclsiB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None