Carg07435 (gene) Silver-seed gourd

Overview
NameCarg07435
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRING/FYVE/PHD zinc finger superfamily protein
LocationCucurbita_argyrosperma_scaffold_019 : 808203 .. 812005 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCTTCTATCGTAGAGATTCTATTCCCATATATGTAAGCATCCCTTCTCTTTCTTTCTCTCTTTCTCTCATGAATTTAATTTTACTCATATGATGTTCATAAGTTCTTGCCTGCAATGTGTTTGTTCATTTGCCAATGATGGTGGAAGTTGTTTGAAGGTTGCTGCCACTGTCTCTTTTTTTTGTGCTTTTTCGTTAGTTTTAGATTTTTCTTGATCTGGATTGTTGTTTCCTTGAATTCATTTGGTTTTGTTAGATTTCTGCCGGAACTTGACGAAGCTAATATATACGTATTACGAATTATTAGTGCAAACGTTTGAATCAGTTTAGAGGTCTTGAGAACTTCGTTTTTGAGTCGCAAGAACTAAATGTTTGAAATGAAGCTAAATATTACTGTTCTAGCTGGAGCACTGGTGCTCAATCCTCTTATTATGCCCATAGGTCTGTTCCTACTTATTATCGAGGAAGGCTTTGCCTATTCCAAGGCCAATCTCTAGAGATCATAATTAACAATCCAAACCCACTGCTATAAGATATTGTCTCTTTGGGCTTTCTCTTTCGAGCTTCCCTTCAAGGTTTTTAAAACGCGTCTACTAGGGAGAGGTTTCTAGACCCTTATAAAGAATGTTTCGTTCTTCTCCCCAACCGATGTGAGATCTCACAATCCACAACCCCGAAGGGGTGGACACGAGGCGGTGTGCCAGGAAAGACACTGGGACCCGAAAGGGGGTGGATTGAGGGGTCTCACATCAATTGGAGTAGGGAACGAGTGCCAGCTAGGATGCGGAGTCTCGAAGGGGGGCGGATTGTGAGATTCCACAGCAGTTGAGGAGGAGAACGAAGTATTCTTTATAAGGATGTGGAAATCTCTCCCTAGTAGACGCATTTTAAAAACCTCGAGGAAAATCCCGAAAGGAAAAGTCCAAAGAGGACAATATCTACTAGCGGTGAGCTTGGACTGTTACAAATGATATCAGAGCTAGACACCAAGCGGTGTGCCAGCGAGGACGCTAGGCCCCAAGGGGTGGATTGTGAAATCTCGGATAGAGGGGGAAACAAAACATTCCTTATAAGGGTGTAGAACCTCTCCCTAATAAACGTGTGTTAAAACCTTGAGGGGAAGCCTGGAAGGAAAAGCTCAAAGAGGACAATATCTACTAGCGGTGGATTTGGGCTGGTATGTCATTGATCTAAATTTAGAAAACAGCAAGTATTTCAATTTGTACTTTTTTCACCTAGGAATTTGAACTCAAGACTTCGGAGGATATCTCCAAACATCCCAATTCCGAAGCCCTTACCAGTTTCCCCACCACCCTTAGGGACGCAAATTCCAAAAATTTCATATTGTCTTTTCTTTTCTGCTCTTTATCTTTGAAGTTATATTATGCTGAGAAACAATCTGAGTCCTCATGAAAGCTGGTCACTGCAGCAAATAAAATCACCTGCACAATTGTAATTGTTGTTTGGCTTATTTGTTTTATTTTATTAACATTCACACCAATTTCTACTGGATCATTGAAGAATGGGGGATCATTTTGTGCTGTTGGTGGATCGGTTGCTCACTGAATCAAACCTTGAAGCTACTATTGAGAGATAAAAACATAATTCTTCATCCTATGGCCTCAACAACTGCAGATAATATGATATCTTCCATAGATATAGATATTGAATCCATATCACCTTCAACTAAACTTGTTGAGTGCAGAATTTGTCATGATGAGGATGATGAATCAAATATGGAAACACCCTGCTCTTGCCGTGGCAGCTTGAAGGTTAGATTTAGTTTAGTCAATACCAACTGGTTTCACTTATAAATAACTCAGATAGCTATTGTTTGAATCCCCCTTTTAAAACTTTATGGCTGACTAAACTGGTTTCAACAATGTTTCGAGAAAATTGTAGAACTAGATTTGTGGCCGTTAAGAATGAGAAACAAAAGTGGGATTGAATCAAATTTCATAATAATGGCTCAGATCGGGCATCCTGTGCTATTCTTGTTTTCCTTTCCCTTTCCAATCCTTATTCCTCGTTGTGTTAGTTTAGATGGTTCATCCTGATAATTAGCTTCCAATTAGTGTCGATAATTGCAGTATGCTCATCGTTTGTGCGTTCAGCGGTGGTGCAACGAGAAAGGCAACACAATCTGCGAGATTTGCCACCAGGTTTGTTGTGTTTATATTAAAAAAAGATGTCTTTAATGCAGGGCTAAATTTATGGTATCAAGAACTCCTTTTTCTTATCAGGACTTTAAGCCAGGGTACACAGCACCTCCCCATGTGTTTTATAATGGAGGTATTAGCTCACTAATGCATTTCAGGTAAGCCATTAACCAACCTATCTCCCCACAATGCATATAGTTTTCTTGTATATTGAGTTCCTGTTCATACATTTCTTCAACACTTTGATATCAAATTGTGGTCTCAGGGGAAGTTGGGAGATGTCAAGGCCGAACCAGCATGTCCCTGCAGGAATGCTCGATCACGAGTATCTCGATTCCGCGTTCGATGATTTCATCAGTCCCTCTCCATGCAGCGTACTGTGCTGCCGCATAGTTGCAGTAATGGTATTCCCTCTCTCTTCAATTTACTTCATTTGCAGTTTCCTTATCTCTGTAAACCAATTTTAAGTGTCTTGGCAATTGGCCTTGCTTTCTGCTGATTGAAAAGTATTACATGTTTTTGCTCGTTGATTCATTTTCATTGACTTATTGAGGCACCAAAGAAATTTAAAATACAGTATTTGGAAATTTAAAGATGAAAATGTAAGGAGTAAATGTTGAGAATTGTTGGGAGGGAGTCTTACTTTGGCTAATTTAGGAAATGATCATGGGTTTATAAGTAAGAAATACATCTATATTGGTATGAGACCTTTTGGAGAAGCTGAAAGCAAAGCCACGAGAGCTTATACTCAAAGTGGACAATATCATACTATTGTGGGTTCGTGATTTCTAACATGGTATTAGAGTCATGCCTTTAACTTAGCCATGTCAATAGAATCCTCAAATGTTGAACAAAGAAGTTGTGAGCCTCGAAGGTGTAGCCAAAATTGACTCAAGTGTCGAACAAAGGGAGTGTACTTTGTTCGAGGACTCCAGAGAAGGAGTCGAGCCTCGATTAAGAGGAGACTGTTCGAGGGCTCCATAGGGCTCGGGGGAGGCTCTGTAGTGTACTTTGTTCAAGGGGAAGATTGTTGAAGATTGTTCATTGGCTAATTTAGGGAATGATCATGGGTTTATAAGTAAGAAATACATCTCCATTGGTATGAAATCTTTTGGGGAAGCCCAAAGCAAAACTATGAGAGCGGACAATATCATACCATTGTGGAGAGTCGTCATTCCTAAGAGTAAAAAGTTCAACAAATGTGGAGGAATGGATTTGAACCTCGAACTTCCACGAAAAGAGTAGATGCTTTAAACGCTAAGCTATGTTCATATTGGCAACTAAGATATTATTTAGCCTATTATTTTTTTTTTTTCTCGTATTTCTATCATTATGACAGTTGGATTGACCTGAAATCCTCAGTTTGAAACTGCTAATCATATCTGTATGTTGCAGTTCATCGTTCTCCTTGTTTTACGCCATACTCTACCGATTATAATTAGTGGAGCTGGAGAGTATTCACTGACATTGTTAATGGTAAGTTTGTTGCTCGGCCTTCCTCCATTGTTTAGACCAATGAAGAGCCACAAGTTCATGTTCTGTGTATTGCAGTTGCTGATCTTGAGAATTGTTGGGATTCTTCTGCCTATATATGTCATGGTTAGGGTATTTACTTCCATTCGAAGACGGCGTCATTATCAGGTT

mRNA sequence

TTTCTTCTATCGTAGAGATTCTATTCCCATATATAATGGGGGATCATTTTGTGCTGTTGGTGGATCGGTTGCTCACTGAATCAAACCTTGAAGCTACTATTGAGAGATAAAAACATAATTCTTCATCCTATGGCCTCAACAACTGCAGATAATATGATATCTTCCATAGATATAGATATTGAATCCATATCACCTTCAACTAAACTTGTTGAGTGCAGAATTTGTCATGATGAGGATGATGAATCAAATATGGAAACACCCTGCTCTTGCCGTGGCAGCTTGAAGTATGCTCATCGTTTGTGCGTTCAGCGGTGGTGCAACGAGAAAGGCAACACAATCTGCGAGATTTGCCACCAGGACTTTAAGCCAGGGTACACAGCACCTCCCCATGTGTTTTATAATGGAGGTATTAGCTCACTAATGCATTTCAGGGGAAGTTGGGAGATGTCAAGGCCGAACCAGCATGTCCCTGCAGGAATGCTCGATCACGAGTATCTCGATTCCGCGTTCGATGATTTCATCAGTCCCTCTCCATGCAGCGTACTGTGCTGCCGCATAGTTGCAGTAATGTTCATCGTTCTCCTTGTTTTACGCCATACTCTACCGATTATAATTAGTGGAGCTGGAGAGTATTCACTGACATTGTTAATGTTGCTGATCTTGAGAATTGTTGGGATTCTTCTGCCTATATATGTCATGGTTAGGGTATTTACTTCCATTCGAAGACGGCGTCATTATCAGGTT

Coding sequence (CDS)

ATGGCCTCAACAACTGCAGATAATATGATATCTTCCATAGATATAGATATTGAATCCATATCACCTTCAACTAAACTTGTTGAGTGCAGAATTTGTCATGATGAGGATGATGAATCAAATATGGAAACACCCTGCTCTTGCCGTGGCAGCTTGAAGTATGCTCATCGTTTGTGCGTTCAGCGGTGGTGCAACGAGAAAGGCAACACAATCTGCGAGATTTGCCACCAGGACTTTAAGCCAGGGTACACAGCACCTCCCCATGTGTTTTATAATGGAGGTATTAGCTCACTAATGCATTTCAGGGGAAGTTGGGAGATGTCAAGGCCGAACCAGCATGTCCCTGCAGGAATGCTCGATCACGAGTATCTCGATTCCGCGTTCGATGATTTCATCAGTCCCTCTCCATGCAGCGTACTGTGCTGCCGCATAGTTGCAGTAATGTTCATCGTTCTCCTTGTTTTACGCCATACTCTACCGATTATAATTAGTGGAGCTGGAGAGTATTCACTGACATTGTTAATGTTGCTGATCTTGAGAATTGTTGGGATTCTTCTGCCTATATATGTCATGGTTAGGGTATTTACTTCCATTCGAAGACGGCGTCATTATCAGGTT

Protein sequence

MASTTADNMISSIDIDIESISPSTKLVECRICHDEDDESNMETPCSCRGSLKYAHRLCVQRWCNEKGNTICEICHQDFKPGYTAPPHVFYNGGISSLMHFRGSWEMSRPNQHVPAGMLDHEYLDSAFDDFISPSPCSVLCCRIVAVMFIVLLVLRHTLPIIISGAGEYSLTLLMLLILRIVGILLPIYVMVRVFTSIRRRRHYQV
Homology
[Close]
BLAST of Carg07435 vs. NCBI nr
Match: XP_023522606.1 (uncharacterized protein LOC111786585 isoform X3 [Cucurbita pepo subsp. pepo] >XP_023522612.1 uncharacterized protein LOC111786585 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 392.9 bits (1008), Expect = 6.7e-106
Identity = 194/198 (97.98%), Postives = 196/198 (98.99%), Query Frame = 0 

Query: 1   MASTTADNMISSIDIDIESISPSTKLVECRICHDEDDESNMETPCSCRGSLKYAHRLCVQ 60
           MAST ADNMISSIDIDIESISPS+KLVECRICHDEDDESNMETPCSCRGSLKYAHR+CVQ
Sbjct: 1   MASTNADNMISSIDIDIESISPSSKLVECRICHDEDDESNMETPCSCRGSLKYAHRMCVQ 60

Query: 61  RWCNEKGNTICEICHQDFKPGYTAPPHVFYNGGISSLMHFRGSWEMSRPNQHVPAGMLDH 120
           RWCNEKGNTICEICHQDFKPGYTAPPHVFYNGGISSLMHFRGSWEMSR NQHVPAGMLDH
Sbjct: 61  RWCNEKGNTICEICHQDFKPGYTAPPHVFYNGGISSLMHFRGSWEMSRLNQHVPAGMLDH 120

Query: 121 EYLDSAFDDFISPSPCSVLCCRIVAVMFIVLLVLRHTLPIIISGAGEYSLTLLMLLILRI 180
           EYLDSAFDDFISPSPCSVLCCRIVAVMFIVLLVLRHTLPIIISGAGEYSLTLLMLLILRI
Sbjct: 121 EYLDSAFDDFISPSPCSVLCCRIVAVMFIVLLVLRHTLPIIISGAGEYSLTLLMLLILRI 180

Query: 181 VGILLPIYVMVRVFTSIR 199
           VGILLPIYVMVRVFTSIR
Sbjct: 181 VGILLPIYVMVRVFTSIR 198

[Close]
BLAST of Carg07435 vs. NCBI nr
Match: XP_022948599.1 (uncharacterized protein LOC111452226 isoform X2 [Cucurbita moschata] >XP_022948600.1 uncharacterized protein LOC111452226 isoform X2 [Cucurbita moschata])

HSP 1 Score: 391.7 bits (1005), Expect = 1.5e-105
Identity = 194/198 (97.98%), Postives = 196/198 (98.99%), Query Frame = 0 

Query: 1   MASTTADNMISSIDIDIESISPSTKLVECRICHDEDDESNMETPCSCRGSLKYAHRLCVQ 60
           MASTTADNMISSIDIDIESISPS+KLVECRICHDEDDESNMETPCSCRGSLKYAHR+CVQ
Sbjct: 1   MASTTADNMISSIDIDIESISPSSKLVECRICHDEDDESNMETPCSCRGSLKYAHRMCVQ 60

Query: 61  RWCNEKGNTICEICHQDFKPGYTAPPHVFYNGGISSLMHFRGSWEMSRPNQHVPAGMLDH 120
           RWCNEKGNTICEICHQDFKPGYTAPPHVFYN GISSLMHFRGSWEMSR NQHVPAGMLDH
Sbjct: 61  RWCNEKGNTICEICHQDFKPGYTAPPHVFYNEGISSLMHFRGSWEMSRLNQHVPAGMLDH 120

Query: 121 EYLDSAFDDFISPSPCSVLCCRIVAVMFIVLLVLRHTLPIIISGAGEYSLTLLMLLILRI 180
           EYLDSAFDDFISPSPCSVLCCRIVAVMFIVLLVLRHTLPIIISGAGEYSLTLLMLLILRI
Sbjct: 121 EYLDSAFDDFISPSPCSVLCCRIVAVMFIVLLVLRHTLPIIISGAGEYSLTLLMLLILRI 180

Query: 181 VGILLPIYVMVRVFTSIR 199
           VGILLPIYVMVRVFTSIR
Sbjct: 181 VGILLPIYVMVRVFTSIR 198

[Close]
BLAST of Carg07435 vs. NCBI nr
Match: XP_022997793.1 (uncharacterized protein LOC111492643 isoform X2 [Cucurbita maxima] >XP_022997794.1 uncharacterized protein LOC111492643 isoform X2 [Cucurbita maxima])

HSP 1 Score: 382.5 bits (981), Expect = 9.1e-103
Identity = 189/198 (95.45%), Postives = 192/198 (96.97%), Query Frame = 0 

Query: 1   MASTTADNMISSIDIDIESISPSTKLVECRICHDEDDESNMETPCSCRGSLKYAHRLCVQ 60
           MAST ADNMI SIDIDIESISPS+KLVECRICHDEDDESNMETPCSCRGSLKYAHR+CVQ
Sbjct: 1   MASTNADNMIPSIDIDIESISPSSKLVECRICHDEDDESNMETPCSCRGSLKYAHRMCVQ 60

Query: 61  RWCNEKGNTICEICHQDFKPGYTAPPHVFYNGGISSLMHFRGSWEMSRPNQHVPAGMLDH 120
           RWCNEKGN ICEICHQDFKPGYTAPPHVFYNGGISSLMHFRGSWEMSR NQHVPA MLDH
Sbjct: 61  RWCNEKGNIICEICHQDFKPGYTAPPHVFYNGGISSLMHFRGSWEMSRLNQHVPAEMLDH 120

Query: 121 EYLDSAFDDFISPSPCSVLCCRIVAVMFIVLLVLRHTLPIIISGAGEYSLTLLMLLILRI 180
           EYLDSAFDDFISPSPCSVLCCRIVAVMFIVLLVLRHTLPIIISGAGE+SLTLLM LILRI
Sbjct: 121 EYLDSAFDDFISPSPCSVLCCRIVAVMFIVLLVLRHTLPIIISGAGEFSLTLLMFLILRI 180

Query: 181 VGILLPIYVMVRVFTSIR 199
           VGILLPIYVMVRVFTSIR
Sbjct: 181 VGILLPIYVMVRVFTSIR 198

[Close]
BLAST of Carg07435 vs. NCBI nr
Match: XP_023522598.1 (uncharacterized protein LOC111786585 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 343.6 bits (880), Expect = 4.7e-91
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0 

Query: 31  ICHDEDDESNMETPCSCRGSLKYAHRLCVQRWCNEKGNTICEICHQDFKPGYTAPPHVFY 90
           ICHDEDDESNMETPCSCRGSLKYAHR+CVQRWCNEKGNTICEICHQDFKPGYTAPPHVFY
Sbjct: 44  ICHDEDDESNMETPCSCRGSLKYAHRMCVQRWCNEKGNTICEICHQDFKPGYTAPPHVFY 103

Query: 91  NGGISSLMHFRGSWEMSRPNQHVPAGMLDHEYLDSAFDDFISPSPCSVLCCRIVAVMFIV 150
           NGGISSLMHFRGSWEMSR NQHVPAGMLDHEYLDSAFDDFISPSPCSVLCCRIVAVMFIV
Sbjct: 104 NGGISSLMHFRGSWEMSRLNQHVPAGMLDHEYLDSAFDDFISPSPCSVLCCRIVAVMFIV 163

Query: 151 LLVLRHTLPIIISGAGEYSLTLLMLLILRIVGILLPIYVMVRVFTSIR 199
           LLVLRHTLPIIISGAGEYSLTLLMLLILRIVGILLPIYVMVRVFTSIR
Sbjct: 164 LLVLRHTLPIIISGAGEYSLTLLMLLILRIVGILLPIYVMVRVFTSIR 211

[Close]
BLAST of Carg07435 vs. NCBI nr
Match: XP_023522591.1 (uncharacterized protein LOC111786585 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 343.6 bits (880), Expect = 4.7e-91
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0 

Query: 31  ICHDEDDESNMETPCSCRGSLKYAHRLCVQRWCNEKGNTICEICHQDFKPGYTAPPHVFY 90
           ICHDEDDESNMETPCSCRGSLKYAHR+CVQRWCNEKGNTICEICHQDFKPGYTAPPHVFY
Sbjct: 61  ICHDEDDESNMETPCSCRGSLKYAHRMCVQRWCNEKGNTICEICHQDFKPGYTAPPHVFY 120

Query: 91  NGGISSLMHFRGSWEMSRPNQHVPAGMLDHEYLDSAFDDFISPSPCSVLCCRIVAVMFIV 150
           NGGISSLMHFRGSWEMSR NQHVPAGMLDHEYLDSAFDDFISPSPCSVLCCRIVAVMFIV
Sbjct: 121 NGGISSLMHFRGSWEMSRLNQHVPAGMLDHEYLDSAFDDFISPSPCSVLCCRIVAVMFIV 180

Query: 151 LLVLRHTLPIIISGAGEYSLTLLMLLILRIVGILLPIYVMVRVFTSIR 199
           LLVLRHTLPIIISGAGEYSLTLLMLLILRIVGILLPIYVMVRVFTSIR
Sbjct: 181 LLVLRHTLPIIISGAGEYSLTLLMLLILRIVGILLPIYVMVRVFTSIR 228

[Close]
BLAST of Carg07435 vs. TAIR10
Match: AT2G01275.1 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 186.0 bits (471), Expect = 2.3e-47
Identity = 90/175 (51.43%), Postives = 123/175 (70.29%), Query Frame = 0 

Query: 26  LVECRICHDEDDESNMETPCSCRGSLKYAHRLCVQRWCNEKGNTICEICHQDFKPGYTAP 85
           + ECRICHDED +SNMETPCSC GS+KYAHR CVQRWCNEKG+T CEICHQ+FKP YTAP
Sbjct: 56  MAECRICHDEDLDSNMETPCSCSGSVKYAHRRCVQRWCNEKGDTTCEICHQEFKPDYTAP 115

Query: 86  PHVFYNGGISSLMHFRGSWEMS-RPNQHVPAGMLDHEYLDSAFDDFISPSPCSVLCCRIV 145
           P +   G +   +HFRG+W +S R ++ +     D  ++D  +      S  S +CCR +
Sbjct: 116 PPLLELGHVP--LHFRGNWGISQREHRFITVVPADSTFIDQPYP---LSSTTSFICCRSL 175

Query: 146 AVMFIVLLVLRHTLPIIISGAGEYSLTLLMLLILRIVGILLPIYVMVRVFTSIRR 200
            ++F+ LL+LRHTLP++++G+  +   L  LL LRI+GI+LPIYV+ +   + RR
Sbjct: 176 VLIFMALLILRHTLPLVLTGSNLHVFPLFTLLFLRILGIMLPIYVVTKAVATCRR 225

[Close]
BLAST of Carg07435 vs. TAIR10
Match: AT5G38070.1 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 181.4 bits (459), Expect = 5.6e-46
Identity = 97/203 (47.78%), Postives = 136/203 (67.00%), Query Frame = 0 

Query: 6   ADNMISSIDID--IESISP-----STKLVECRICHDEDDESNMETPCSCRGSLKYAHRLC 65
           AD    S++ D   ESIS       +K V+CRICHDED+++NM+TPCSC G+LK+AH  C
Sbjct: 24  ADPKADSVNEDGVSESISAGADLCESKFVQCRICHDEDEDTNMDTPCSCSGTLKFAHHNC 83

Query: 66  VQRWCNEKGNTICEICHQDFKPGYTAPPHVFYNGGISSLMHFRGSWEMSRPNQHVPAGML 125
           VQRWCNEKG+T+CEIC Q +KPGYTAP  +F+  GIS  M+F   W +   +   P   L
Sbjct: 84  VQRWCNEKGDTVCEICRQQYKPGYTAPRQLFHYTGIS--MNFGSDWGIEGLDLRNPY-FL 143

Query: 126 DHEYLDSAFDDFISPSPCSVLCCRIVAVMFIVLLVLRHTLPIIISGAGEYSLTLLMLLIL 185
                D   D +   SP S++CCR++A++F++LL LRH+LP+++ G  ++S+TLLML ++
Sbjct: 144 TWGDADDDHDLYSFHSPTSLICCRLIALLFVLLLFLRHSLPVLLGGVDDFSITLLMLPLV 203

Query: 186 RIVGILLPIYVMVRVFTSIRRRR 202
           R +GILL  YV  + F  I+R R
Sbjct: 204 RTLGILLIAYVFFKSFIVIQRCR 223

[Close]
BLAST of Carg07435 vs. TAIR10
Match: AT1G02610.1 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 134.4 bits (337), Expect = 7.8e-32
Identity = 75/182 (41.21%), Postives = 112/182 (61.54%), Query Frame = 0 

Query: 29  CRICHDEDDESNMETPCSCRGSLKYAHRLCVQRWCNEKGNTICEICHQDFKPGY--TAPP 88
           CRICH+E+ ES  E PCSC G++K+AHR C+QRWC+EKGNTICEIC Q++KPGY  T+ P
Sbjct: 20  CRICHEEEAESYFEAPCSCSGTIKFAHRDCIQRWCDEKGNTICEICLQEYKPGYTTTSKP 79

Query: 89  HVFYNGGIS---SLMHFRGSWEMSRPNQHVPAGMLDHEYLDSAFDDFISPSPCSVLCCRI 148
             F    ++   +L   R      R N+     +++ E  +S F +  S       CCR 
Sbjct: 80  SRFIETAVTIRDNLHIMRRENGRRRRNRR----LVNRE--ESDFQECNSGVDRGASCCRY 139

Query: 149 VAVMFIVLLVLRHTLPIIISGAGEYSLTLLMLLILRIVGILLPIYVMVRVFTSIRRRRHY 206
           +A++F V+L+++H    +  G  EY  T+  +L L+ +GILLP+ V++R  T+I+R   Y
Sbjct: 140 LALIFSVILLIKHAFDAVY-GTEEYPYTIFTVLTLKAIGILLPMLVIIRTITAIQRSLRY 194

[Close]
BLAST of Carg07435 vs. TAIR10
Match: AT1G14260.1 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 121.7 bits (304), Expect = 5.2e-28
Identity = 76/208 (36.54%), Postives = 99/208 (47.60%), Query Frame = 0 

Query: 6   ADNMISSIDIDIESISPSTKLV---ECRICHDEDDESNMETPCSCRGSLKYAHRLCVQRW 65
           ADN I   D D         L+   ECRIC DE D  N+E+PC+C GSLKYAHR CVQRW
Sbjct: 31  ADNAIDIYDGDTTENEEEDSLISSAECRICQDECDIKNLESPCACNGSLKYAHRKCVQRW 90

Query: 66  CNEKGNTICEICHQDFKPGYTAPPHVFYNGGISSLMHFRGSWEMSRPNQHVP----AGML 125
           CNEKGNTICEICHQ ++ GYT+                 G W +S  +   P        
Sbjct: 91  CNEKGNTICEICHQPYQAGYTS--XXXXXXXXXXXXDIGGGWRISGLDLDDPRLLAIAEA 150

Query: 126 DHEYLDSAFDDFISPSPCSVLCCRIVAVMFIVLLVLRH--TLPIIISGAGEYSLTLLMLL 185
           + + L+S +DD+ +         R            RH  T+P       +   ++L L 
Sbjct: 151 ERQILESEYDDYTASDTSGAAFFRSAXXXXXXXXXXRHALTIPDYSDSEDDDPSSILSLF 210

Query: 186 ILRIVGILLPIYVMVRVFTSIRRRRHYQ 205
           +LR    LLP Y+M    + + RRR  Q
Sbjct: 211 LLRAASFLLPCYIMASAISILHRRRQRQ 236

[Close]
BLAST of Carg07435 vs. TAIR10
Match: AT2G02960.5 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 118.2 bits (295), Expect = 5.8e-27
Identity = 60/129 (46.51%), Postives = 76/129 (58.91%), Query Frame = 0 

Query: 10  ISSIDIDIESISPSTKLVECRICHDEDDESNMETPCSCRGSLKYAHRLCVQRWCNEKGNT 69
           IS  D D E+  P     ECRIC DE    N+E+PC+C GSLKYAHR CVQRWCNEKGN 
Sbjct: 25  ISDDDHDDEN-EPLIVSGECRICSDESPVENLESPCACSGSLKYAHRKCVQRWCNEKGNI 84

Query: 70  ICEICHQDFKPGYTAPPHVFYNGGISSLMHFRGSWEMSRPNQHVP----AGMLDHEYLDS 129
           ICEICHQ ++PGYTAPP         + +   G W +S  + H P        +  YL+S
Sbjct: 85  ICEICHQPYQPGYTAPPPPLQPE--ETTIDIGGGWTISGLDVHDPRLLAIAEAERRYLES 144

Query: 130 AFDDFISPS 135
            + ++ + S
Sbjct: 145 EYVEYTASS 150

[Close]
BLAST of Carg07435 vs. Swiss-Prot
Match: sp|Q5T0T0|MARH8_HUMAN (E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens OX=9606 GN=MARCH8 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.0e-10
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 0 

Query: 19  SISPSTKLVECRICHDE-DDESNMETPCSCRGSLKYAHRLCVQRWCNEKGNTICEICHQD 78
           SI+PS++ + CRICH E DDES + TPC C GSL + H+ C+Q+W        CE+C  +
Sbjct: 71  SITPSSQDI-CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYE 130

[Close]
BLAST of Carg07435 vs. Swiss-Prot
Match: sp|Q0VD59|MARH8_BOVIN (E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus OX=9913 GN=MARCH8 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-09
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0 

Query: 19  SISPSTKLVECRICHDE-DDESNMETPCSCRGSLKYAHRLCVQRWCNEKGNTICEICHQD 78
           S++PS + + CRICH E DDES + TPC C GSL + H+ C+Q+W        CE+C  +
Sbjct: 69  SVTPSNQDI-CRICHCEGDDESPLITPCRCTGSLHFVHQTCLQQWIKSSDTRCCELCKYE 128

[Close]
BLAST of Carg07435 vs. Swiss-Prot
Match: sp|Q9DBD2|MARH8_MOUSE (E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus OX=10090 GN=March8 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-09
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0 

Query: 19  SISPSTKLVECRICHDE-DDESNMETPCSCRGSLKYAHRLCVQRWCNEKGNTICEICHQD 78
           S++PS + + CRICH E DDES + TPC C GSL + H+ C+Q+W        CE+C  +
Sbjct: 67  SVTPSNQDI-CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYE 126

[Close]
BLAST of Carg07435 vs. Swiss-Prot
Match: sp|Q5XH39|MARH8_XENLA (E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis OX=8355 GN=march8 PE=2 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-09
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 0 

Query: 19  SISPSTKLVECRICHDE-DDESNMETPCSCRGSLKYAHRLCVQRWCNEKGNTICEICHQD 78
           S++PS++ + CRICH E DDES + TPC C GSL + H+ C+Q+W        CE+C  +
Sbjct: 44  SVTPSSQDI-CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKFE 103

[Close]
BLAST of Carg07435 vs. Swiss-Prot
Match: sp|Q28IK8|MARH8_XENTR (E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis OX=8364 GN=march8 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-09
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 0 

Query: 19  SISPSTKLVECRICHDE-DDESNMETPCSCRGSLKYAHRLCVQRWCNEKGNTICEICHQD 78
           S++PS++ + CRICH E DDES + TPC C GSL + H+ C+Q+W        CE+C  +
Sbjct: 44  SVTPSSQDI-CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKFE 103

[Close]
BLAST of Carg07435 vs. TrEMBL
Match: tr|A0A0A0LBM8|A0A0A0LBM8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G186720 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 2.5e-85
Identity = 162/206 (78.64%), Postives = 180/206 (87.38%), Query Frame = 0 

Query: 1   MAST--TADNMISSIDIDIESISPSTKLVECRICHDEDDESNMETPCSCRGSLKYAHRLC 60
           MAST   ADNMISS +ID+ES+SPS+ +V+CRICHDEDD S METPCSC GSLKYAHR C
Sbjct: 32  MASTNANADNMISSSNIDVESVSPSS-IVQCRICHDEDDGSKMETPCSCCGSLKYAHRKC 91

Query: 61  VQRWCNEKGNTICEICHQDFKPGYTAPPHVFYNGGISSLMHFRGSWEMSRPNQHVPAGML 120
           +QRWCNEKG+TICEICHQDFKPGYT+PP VFY G I+S +HFRGSWEMSR N HVPAGM 
Sbjct: 92  IQRWCNEKGDTICEICHQDFKPGYTSPPPVFYYGDINSPIHFRGSWEMSRLNLHVPAGMP 151

Query: 121 DHEYLDSAFDDFISPSPCSVLCCRIVAVMFIVLLVLRHTLPIIISGAGEYSLTLLMLLIL 180
           DHEYLDS FDDF +PSP S+LCCR+VAV+FI LLVLRHTLPI+ISGAG YS TLLMLLIL
Sbjct: 152 DHEYLDSDFDDFFAPSPRSILCCRVVAVIFIALLVLRHTLPIVISGAGGYSWTLLMLLIL 211

Query: 181 RIVGILLPIYVMVRVFTSIRRRRHYQ 205
           RIVGILLPIYVMV+ FT I+RR  YQ
Sbjct: 212 RIVGILLPIYVMVKAFTYIQRRHRYQ 236

[Close]
BLAST of Carg07435 vs. TrEMBL
Match: tr|A0A1S4E264|A0A1S4E264_CUCME (uncharacterized protein LOC103496860 OS=Cucumis melo OX=3656 GN=LOC103496860 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 4.2e-80
Identity = 157/238 (65.97%), Postives = 180/238 (75.63%), Query Frame = 0 

Query: 2   ASTTADNMISSIDIDIESISPSTKLVECRICHDEDDESNMETPCSCRGSLKYAHRLCVQR 61
           A+  ADNMISS++ID+ES+SPS+ +V+CRICHDEDD S METPCSC GSLKYAHR C+QR
Sbjct: 4   ANANADNMISSLNIDVESVSPSS-IVQCRICHDEDDGSKMETPCSCCGSLKYAHRKCIQR 63

Query: 62  WCNEKGNTICEICHQDFKPGYTAPPHVFYNGGISSLMHFRGSWEMSRPNQHVPAGMLDHE 121
           WCNEKG+TICEICHQDFKPGYT+PP VFY G I++ MHFRGSWEMSR N HVPAGM DHE
Sbjct: 64  WCNEKGDTICEICHQDFKPGYTSPPPVFYYGDINAPMHFRGSWEMSRLNLHVPAGMPDHE 123

Query: 122 YLDSAFDDFISPSPCSVLCCRIVAVMFIVLLVLRHTLPIIISGAGEYSLTLLM------- 181
           YLDS FDDF +PSP S+L CR+VAV+FI LL+LRHTLPI+ISGAG +SLTLLM       
Sbjct: 124 YLDSDFDDFFAPSPRSILFCRVVAVIFIALLILRHTLPIVISGAGGHSLTLLMVRLFLGF 183

Query: 182 ----------------------------LLILRIVGILLPIYVMVRVFTSIRRRRHYQ 205
                                       LL+LRIVGILLPIYVMV+ FT I+RR HYQ
Sbjct: 184 PSSTFLSLGPFLLLKPGKNHKFMCSIFQLLVLRIVGILLPIYVMVKAFTFIQRRHHYQ 240

[Close]
BLAST of Carg07435 vs. TrEMBL
Match: tr|A0A2P5CBR3|A0A2P5CBR3_9ROSA (Zinc finger, RING-CH-type OS=Trema orientalis OX=63057 GN=TorRG33x02_290980 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.1e-71
Identity = 140/208 (67.31%), Postives = 169/208 (81.25%), Query Frame = 0 

Query: 1   MASTTADNMISSIDIDIESISPSTKLVECRICHDEDDESNMETPCSCRGSLKYAHRLCVQ 60
           M   + DNMISS  ID+   S S KLVECRICHDED++ NMETPCSCRGSLKYAHR CVQ
Sbjct: 32  MPFASQDNMISSHKIDMNISSSSGKLVECRICHDEDEDLNMETPCSCRGSLKYAHRKCVQ 91

Query: 61  RWCNEKGNTICEICHQDFKPGYTAPPHVFYNGGISSLMHFRGSWEMSRPNQHVP--AGML 120
           RWCNEKG+ ICEICHQ F+PGYTAPP +F+ GG+   M+FRG+WE+SR + H     GM+
Sbjct: 92  RWCNEKGDIICEICHQQFEPGYTAPPPLFHYGGVP--MNFRGNWEISRRDLHNTQFLGMV 151

Query: 121 --DHEYLDSAFDDFISPSPCSVLCCRIVAVMFIVLLVLRHTLPIIISGAGEYSLTLLMLL 180
             D +Y+D+ FD++  PSP SV+CCRIVA++F+VLLVLRHTLPIIISGAGEYS+TL MLL
Sbjct: 152 TPDRDYVDTEFDEYPVPSPRSVMCCRIVAIIFMVLLVLRHTLPIIISGAGEYSMTLFMLL 211

Query: 181 ILRIVGILLPIYVMVRVFTSIRRRRHYQ 205
           +LR +GILLPI++MVR FTSI+R RH Q
Sbjct: 212 VLRTIGILLPIFIMVRAFTSIQRHRHQQ 237

[Close]
BLAST of Carg07435 vs. TrEMBL
Match: tr|A0A2P5DVX3|A0A2P5DVX3_PARAD (Zinc finger, RING-CH-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_026140 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 2.8e-68
Identity = 135/209 (64.59%), Postives = 168/209 (80.38%), Query Frame = 0 

Query: 1   MASTTADNMISSIDIDIESISPSTKLVECRICHDEDDESNMETPCSCRGSLKYAHRLCVQ 60
           M   + D+MISS  ID+   S S  LVECRICHDED++ NMETPCSCRGSLKYAHR CVQ
Sbjct: 32  MPFASQDDMISSHKIDMNISSSSGTLVECRICHDEDEDLNMETPCSCRGSLKYAHRKCVQ 91

Query: 61  RWCNEKGNTICEICHQDFKPGYTAPPHVFYNGGISSLMHFRGSWEMSRPNQHVP--AGML 120
           RWCNEKG+ ICEICHQ F+ GYTAPP +F+ GG+   M+FRG+WE+SR + H     GM+
Sbjct: 92  RWCNEKGDIICEICHQQFESGYTAPPPLFHYGGVP--MNFRGNWEISRRDLHNTQFLGMV 151

Query: 121 --DHEYLDSAFDDFISPSPCSVLCCRIVAVMFIVLLVLRHTLPIIISGAGEYSLTLLMLL 180
             D +Y+++ FD++  PSP SV+CCRIVA++F+VLLVLRH+LPIIISGAGEYS+T+ MLL
Sbjct: 152 TPDRDYVNTEFDEYPVPSPRSVMCCRIVAIIFMVLLVLRHSLPIIISGAGEYSMTVFMLL 211

Query: 181 ILRIVGILLPIYVMVRVFTSIRRRRHYQV 206
           +LR +GILLPI++MVR FTSI+R RH QV
Sbjct: 212 VLRTIGILLPIFIMVRAFTSIQRHRHQQV 238

[Close]
BLAST of Carg07435 vs. TrEMBL
Match: tr|A0A2C9WBS4|A0A2C9WBS4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G073300 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.1e-67
Identity = 127/194 (65.46%), Postives = 161/194 (82.99%), Query Frame = 0 

Query: 15  IDIESISPSTKLVECRICHDEDDESNMETPCSCRGSLKYAHRLCVQRWCNEKGNTICEIC 74
           +D++  S S KLVECRICHDED++SNME PCSC GSLKYAHR CVQRWCNEKG+T+CEIC
Sbjct: 48  MDLDFRSSSRKLVECRICHDEDEDSNMEVPCSCCGSLKYAHRKCVQRWCNEKGDTVCEIC 107

Query: 75  HQDFKPGYTAPPHVFYNGGISSLMHFRGSWEMSRPNQHVPAGM----LDHEYLDSAFDDF 134
           HQ FKPGYTAPP +F+ GG+   M+FRG+WE++R + + P  +     DHE++DS FD++
Sbjct: 108 HQQFKPGYTAPPPLFHYGGVP--MNFRGNWEITRRDLNNPGFIAMVTTDHEFIDSDFDEY 167

Query: 135 ISPSPCSVLCCRIVAVMFIVLLVLRHTLPIIISGAGEYSLTLLMLLILRIVGILLPIYVM 194
            +PSP S++CCRIVA++F++LLVLRHTLPIIISGAG+YS T+ MLLILR +GILLPIYVM
Sbjct: 168 SAPSPRSLMCCRIVAIIFMILLVLRHTLPIIISGAGDYSSTMFMLLILRTIGILLPIYVM 227

Query: 195 VRVFTSIRRRRHYQ 205
           V+ FT+I+ RR  Q
Sbjct: 228 VKAFTAIQHRRQQQ 239

The following BLAST results are available for this feature:
BLAST of Carg07435 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023522606.16.7e-10697.98uncharacterized protein LOC111786585 isoform X3 [Cucurbita pepo subsp. pepo] >XP... [more]
XP_022948599.11.5e-10597.98uncharacterized protein LOC111452226 isoform X2 [Cucurbita moschata] >XP_0229486... [more]
XP_022997793.19.1e-10395.45uncharacterized protein LOC111492643 isoform X2 [Cucurbita maxima] >XP_022997794... [more]
XP_023522598.14.7e-9198.81uncharacterized protein LOC111786585 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023522591.14.7e-9198.81uncharacterized protein LOC111786585 isoform X1 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg07435 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G01275.12.3e-4751.43RING/FYVE/PHD zinc finger superfamily protein[more]
AT5G38070.15.6e-4647.78RING/FYVE/PHD zinc finger superfamily protein[more]
AT1G02610.17.8e-3241.21RING/FYVE/PHD zinc finger superfamily protein[more]
AT1G14260.15.2e-2836.54RING/FYVE/PHD zinc finger superfamily protein[more]
AT2G02960.55.8e-2746.51RING/FYVE/PHD zinc finger superfamily protein[more]
BLAST of Carg07435 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q5T0T0|MARH8_HUMAN8.0e-1047.54E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens OX=9606 GN=MARCH8 PE=1 SV=1[more]
sp|Q0VD59|MARH8_BOVIN1.4e-0945.90E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus OX=9913 GN=MARCH8 PE=2 SV=1[more]
sp|Q9DBD2|MARH8_MOUSE1.4e-0945.90E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus OX=10090 GN=March8 PE=2 SV=1[more]
sp|Q5XH39|MARH8_XENLA1.8e-0945.90E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis OX=8355 GN=march8 PE=2 SV=2[more]
sp|Q28IK8|MARH8_XENTR1.8e-0945.90E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis OX=8364 GN=march8 PE=2 ... [more]
BLAST of Carg07435 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LBM8|A0A0A0LBM8_CUCSA2.5e-8578.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G186720 PE=4 SV=1[more]
tr|A0A1S4E264|A0A1S4E264_CUCME4.2e-8065.97uncharacterized protein LOC103496860 OS=Cucumis melo OX=3656 GN=LOC103496860 PE=... [more]
tr|A0A2P5CBR3|A0A2P5CBR3_9ROSA2.1e-7167.31Zinc finger, RING-CH-type OS=Trema orientalis OX=63057 GN=TorRG33x02_290980 PE=4... [more]
tr|A0A2P5DVX3|A0A2P5DVX3_PARAD2.8e-6864.59Zinc finger, RING-CH-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_026140 ... [more]
tr|A0A2C9WBS4|A0A2C9WBS4_MANES1.1e-6765.46Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G073300 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR033275MARCH-like
IPR013083Znf_RING/FYVE/PHD
IPR022143DUF3675
IPR011016Znf_RING-CH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07435-RACarg07435-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 28..75
e-value: 7.0E-22
score: 88.7
IPR011016Zinc finger, RING-CH-typePFAMPF12906RINGvcoord: 29..74
e-value: 8.9E-14
score: 51.3
IPR011016Zinc finger, RING-CH-typePROSITEPS51292ZF_RING_CHcoord: 21..81
score: 21.757
IPR022143Protein of unknown function DUF3675PFAMPF12428DUF3675coord: 80..193
e-value: 3.8E-33
score: 114.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 15..84
e-value: 9.5E-20
score: 71.9
NoneNo IPR availablePANTHERPTHR23012:SF100SUBFAMILY NOT NAMEDcoord: 8..204
NoneNo IPR availableCDDcd16495RING_CH-C4HC3_MARCHcoord: 29..75
e-value: 1.27297E-17
score: 72.7452
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 27..79
IPR033275E3 ubiquitin-protein ligase MARCH-likePANTHERPTHR23012MEMBRANE ASSOCIATED RING FINGERcoord: 8..204