Lsi05G001470 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi05G001470
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_91
Locationchr05 : 2139347 .. 2140165 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCATTCTCTGATTGCTTTAACTTGTGGAGCTTTAATGATGTTTTACTCCCACGAGGTCTATGTGTTTGGTCATGGCCCTGAAACAGCAATCAAGCTGCAGGGATCTAGCCCCCACGATCAGCTTCTGATAAAGACATCTGATTCTTTCTCTGGTTTGCTTCTCTTTACTGTTGGGTTTCTTTTATTCATGGTGGCTTTTGTCAAAGATAGAGAGTTCCAAAGCTTCTTTGCTAAAGGCTGCGTGTTGCTTCATCTAGCTATGGCCATATGGAGAGTTTATTTCGAGAGAAAGCTTGAGGATCTCGCACGAGATTGGCCTCGACAGGTCGTTGGGGATGTTACATTGGCATTGTCATGGGTTTTCTTTCTTGTGTATTCATGGAGAGAAAAATACGATTAACTTTAGGTTCAACTTTTCTTTCATCTGTCATTATTGTTTAAAATTATCCATTATGACTGTGCTTCTTAATTATGATGAGTTTGATGGAAATTGATATTGTTTTCACTGATTTCTGCTACCATTTTGTTTTGAGAATAGGGGGATTTGGGGACTGGGAAGTGAGATAGAAATCGAAGATCGATTTGATCAGTTTCCGTTAACCAGATTGAGCTTGAATTTGGTTTCTGTTCTGTGTCTGGATAGACAACACATTCATTTGCTCATGCTGGCTATCTTCTGCAAGATTGTGCATTTTGCCTTTCTTTATGGTTAGAATCAGAGTTCCAACTCCATGCCAAAAATGGCATTTTGGACCATGAATGTGACCCCTGGAGTAGTAACCGGGGCAAGGAGCAACTCATGGCAGGCTGCTAG

mRNA sequence

ATGCTTCATTCTCTGATTGCTTTAACTTGTGGAGCTTTAATGATGTTTTACTCCCACGAGGTCTATGTGTTTGGTCATGGCCCTGAAACAGCAATCAAGCTGCAGGGATCTAGCCCCCACGATCAGCTTCTGATAAAGACATCTGATTCTTTCTCTGGTTTGCTTCTCTTTACTGTTGGGTTTCTTTTATTCATGGTGGCTTTTGTCAAAGATAGAGAGTTCCAAAGCTTCTTTGCTAAAGGCTGCGTGTTGCTTCATCTAGCTATGGCCATATGGAGAGTTTATTTCGAGAGAAAGCTTGAGGATCTCGCACGAGATTGGCCTCGACAGACAACACATTCATTTGCTCATGCTGGCTATCTTCTGCAAGATTGTGCATTTTGCCTTTCTTTATGGTTAGAATCAGAGTTCCAACTCCATGCCAAAAATGGCATTTTGGACCATGAATGTGACCCCTGGAGTAGTAACCGGGGCAAGGAGCAACTCATGGCAGGCTGCTAG

Coding sequence (CDS)

ATGCTTCATTCTCTGATTGCTTTAACTTGTGGAGCTTTAATGATGTTTTACTCCCACGAGGTCTATGTGTTTGGTCATGGCCCTGAAACAGCAATCAAGCTGCAGGGATCTAGCCCCCACGATCAGCTTCTGATAAAGACATCTGATTCTTTCTCTGGTTTGCTTCTCTTTACTGTTGGGTTTCTTTTATTCATGGTGGCTTTTGTCAAAGATAGAGAGTTCCAAAGCTTCTTTGCTAAAGGCTGCGTGTTGCTTCATCTAGCTATGGCCATATGGAGAGTTTATTTCGAGAGAAAGCTTGAGGATCTCGCACGAGATTGGCCTCGACAGACAACACATTCATTTGCTCATGCTGGCTATCTTCTGCAAGATTGTGCATTTTGCCTTTCTTTATGGTTAGAATCAGAGTTCCAACTCCATGCCAAAAATGGCATTTTGGACCATGAATGTGACCCCTGGAGTAGTAACCGGGGCAAGGAGCAACTCATGGCAGGCTGCTAG

Protein sequence

MLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDSFSGLLLFTVGFLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLARDWPRQTTHSFAHAGYLLQDCAFCLSLWLESEFQLHAKNGILDHECDPWSSNRGKEQLMAGC
BLAST of Lsi05G001470 vs. TrEMBL
Match: W9SMI9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021498 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.2e-47
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = 1

Query: 1   MLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDSFSGLLLFTVG 60
           +LHSL+ALTCG LMMFYS+E+Y+FGHG ETA KLQGS+PHDQLL +TSDSFSGLLLF +G
Sbjct: 11  VLHSLVALTCGILMMFYSNELYIFGHGLETARKLQGSTPHDQLLFRTSDSFSGLLLFAIG 70

Query: 61  FLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLARDWPRQTTHSFAHA 119
           FLLFMVAFVKDREFQSFFAKGCVLLH+AMAIWR  FERKLEDL+ DWPRQ     A A
Sbjct: 71  FLLFMVAFVKDREFQSFFAKGCVLLHIAMAIWRACFERKLEDLSSDWPRQVVGDIALA 128

BLAST of Lsi05G001470 vs. TrEMBL
Match: A5BT07_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027197 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.1e-47
Identity = 91/110 (82.73%), Postives = 104/110 (94.55%), Query Frame = 1

Query: 1   MLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDSFSGLLLFTVG 60
           +LHS+IALTCGALMMFY++E++VFGHGPE A KLQGS+PHDQLLI+TSDSFSGLLLF +G
Sbjct: 11  ILHSVIALTCGALMMFYTNEIFVFGHGPEIARKLQGSTPHDQLLIRTSDSFSGLLLFAIG 70

Query: 61  FLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLARDWPRQ 111
           FLLFMVAFVKDREFQSFFAKGCV LH+ MA+WR+YFERKLEDLA DWP+Q
Sbjct: 71  FLLFMVAFVKDREFQSFFAKGCVTLHVFMALWRIYFERKLEDLAWDWPKQ 120

BLAST of Lsi05G001470 vs. TrEMBL
Match: F6H246_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g02720 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.1e-47
Identity = 91/109 (83.49%), Postives = 103/109 (94.50%), Query Frame = 1

Query: 2   LHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDSFSGLLLFTVGF 61
           LHS+IALTCGALMMFY++E++VFGHGPE A KLQGS+PHDQLLI+TSDSFSGLLLF +GF
Sbjct: 14  LHSVIALTCGALMMFYTNEIFVFGHGPEIARKLQGSTPHDQLLIRTSDSFSGLLLFAIGF 73

Query: 62  LLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLARDWPRQ 111
           LLFMVAFVKDREFQSFFAKGCV LH+ MA+WR+YFERKLEDLA DWP+Q
Sbjct: 74  LLFMVAFVKDREFQSFFAKGCVTLHVFMALWRIYFERKLEDLAWDWPKQ 122

BLAST of Lsi05G001470 vs. TrEMBL
Match: B9N1G9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41060g PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.3e-45
Identity = 91/118 (77.12%), Postives = 103/118 (87.29%), Query Frame = 1

Query: 1   MLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDSFSGLLLFTVG 60
           MLHS++ALTCGALMMFY++E  VFGHG E A KL+GS+PHDQLL++TSDSFSGLLLF +G
Sbjct: 11  MLHSVMALTCGALMMFYTNEATVFGHGIEIATKLKGSTPHDQLLVQTSDSFSGLLLFAIG 70

Query: 61  FLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLARDWPRQTTHSFAHA 119
           FLLFMVAFVKDREFQSFFAKGCVLLH++MA WR+YFERKLEDLARD PR      A A
Sbjct: 71  FLLFMVAFVKDREFQSFFAKGCVLLHVSMAFWRIYFERKLEDLARDLPRLVVGDIALA 128

BLAST of Lsi05G001470 vs. TrEMBL
Match: M5WHX0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013009mg PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.3e-45
Identity = 94/125 (75.20%), Postives = 106/125 (84.80%), Query Frame = 1

Query: 1   MLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDSFSGLLLFTVG 60
           MLHS+IAL  GALMMFYS+E YVF HG ETA KLQGS+PHDQLLI+T+DS SGLLLF++G
Sbjct: 11  MLHSVIALISGALMMFYSYEFYVFSHGLETASKLQGSTPHDQLLIQTADSLSGLLLFSIG 70

Query: 61  FLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLARDWPRQTTHSFAHA-- 120
            LLFMVAFVKD +FQSFFAKGCVLLH++MAIWRVYFERKLEDLARDWP+Q       A  
Sbjct: 71  SLLFMVAFVKDNKFQSFFAKGCVLLHISMAIWRVYFERKLEDLARDWPKQVAGDITLALS 130

Query: 121 -GYLL 123
            G+LL
Sbjct: 131 WGFLL 135

BLAST of Lsi05G001470 vs. TAIR10
Match: AT1G53035.1 (AT1G53035.1 unknown protein)

HSP 1 Score: 150.6 bits (379), Expect = 8.5e-37
Identity = 72/118 (61.02%), Postives = 92/118 (77.97%), Query Frame = 1

Query: 1   MLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDSFSGLLLFTVG 60
           +LHS+IALT G LMMFY+ +  +FG G E A KL+GS+PHD+LLI+ S SFSGLLLF +G
Sbjct: 17  ILHSIIALTSGTLMMFYTEKASIFGPGSEIASKLKGSTPHDELLIQISQSFSGLLLFAIG 76

Query: 61  FLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLARDWPRQTTHSFAHA 119
            +LFMV+FVKD+EF SFFA G V+L++ MA+WRV FE K+EDLA +WP+Q     A A
Sbjct: 77  LVLFMVSFVKDKEFHSFFAGGSVILYVLMAMWRVLFEWKIEDLAYEWPKQALGDIALA 134

BLAST of Lsi05G001470 vs. TAIR10
Match: AT3G15358.1 (AT3G15358.1 unknown protein)

HSP 1 Score: 147.9 bits (372), Expect = 5.5e-36
Identity = 71/118 (60.17%), Postives = 91/118 (77.12%), Query Frame = 1

Query: 1   MLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDSFSGLLLFTVG 60
           +LHS+IALT G LMMFY+ +  +FGHG + A KL+GS+PHD+ LI+ S SFSGLLLF +G
Sbjct: 11  ILHSIIALTSGTLMMFYTEKASIFGHGSDIANKLKGSTPHDEQLIQISQSFSGLLLFAIG 70

Query: 61  FLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLARDWPRQTTHSFAHA 119
            +LFMV+FVKDREF SFFA G V+L++ MA+WRV FE K+EDLA + P+Q     A A
Sbjct: 71  LVLFMVSFVKDREFHSFFAAGSVILYMVMALWRVMFEWKIEDLAFECPKQALGDIALA 128

BLAST of Lsi05G001470 vs. NCBI nr
Match: gi|659112034|ref|XP_008456033.1| (PREDICTED: uncharacterized protein LOC103496084 [Cucumis melo])

HSP 1 Score: 225.7 bits (574), Expect = 5.9e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1

Query: 1   MLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDSFSGLLLFTVG 60
           MLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDSFSGLLLFTVG
Sbjct: 11  MLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDSFSGLLLFTVG 70

Query: 61  FLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLARDWPRQ 111
           FLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLARDWPRQ
Sbjct: 71  FLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLARDWPRQ 120

BLAST of Lsi05G001470 vs. NCBI nr
Match: gi|778680327|ref|XP_011651290.1| (PREDICTED: uncharacterized protein LOC101222658 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 1.9e-54
Identity = 107/110 (97.27%), Postives = 108/110 (98.18%), Query Frame = 1

Query: 1   MLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDSFSGLLLFTVG 60
           MLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDSFSGLLLFTVG
Sbjct: 11  MLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDSFSGLLLFTVG 70

Query: 61  FLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLARDWPRQ 111
            LLFMVAFV+DREFQSFFAKGCVLLHL MAIWRVYFERKLEDLARDWPRQ
Sbjct: 71  LLLFMVAFVRDREFQSFFAKGCVLLHLGMAIWRVYFERKLEDLARDWPRQ 120

BLAST of Lsi05G001470 vs. NCBI nr
Match: gi|1009139855|ref|XP_015887338.1| (PREDICTED: uncharacterized protein LOC107422415 [Ziziphus jujuba])

HSP 1 Score: 200.3 bits (508), Expect = 2.7e-48
Identity = 95/118 (80.51%), Postives = 104/118 (88.14%), Query Frame = 1

Query: 1   MLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDSFSGLLLFTVG 60
           MLHSL+ALTCGALMMFYS+E Y FGHG ETA KLQGS+PHDQLL++TSDSFSGLLLF +G
Sbjct: 11  MLHSLVALTCGALMMFYSNEFYAFGHGSETAHKLQGSTPHDQLLVRTSDSFSGLLLFVIG 70

Query: 61  FLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLARDWPRQTTHSFAHA 119
            LLFMVAFVKDREFQSFFAKGC+LLH+AMA+WRVYFER LEDLA DWPRQ     A A
Sbjct: 71  CLLFMVAFVKDREFQSFFAKGCILLHIAMALWRVYFERNLEDLAWDWPRQVVGDIALA 128

BLAST of Lsi05G001470 vs. NCBI nr
Match: gi|703162146|ref|XP_010112977.1| (hypothetical protein L484_021498 [Morus notabilis])

HSP 1 Score: 197.6 bits (501), Expect = 1.7e-47
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = 1

Query: 1   MLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDSFSGLLLFTVG 60
           +LHSL+ALTCG LMMFYS+E+Y+FGHG ETA KLQGS+PHDQLL +TSDSFSGLLLF +G
Sbjct: 11  VLHSLVALTCGILMMFYSNELYIFGHGLETARKLQGSTPHDQLLFRTSDSFSGLLLFAIG 70

Query: 61  FLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLARDWPRQTTHSFAHA 119
           FLLFMVAFVKDREFQSFFAKGCVLLH+AMAIWR  FERKLEDL+ DWPRQ     A A
Sbjct: 71  FLLFMVAFVKDREFQSFFAKGCVLLHIAMAIWRACFERKLEDLSSDWPRQVVGDIALA 128

BLAST of Lsi05G001470 vs. NCBI nr
Match: gi|147801862|emb|CAN74977.1| (hypothetical protein VITISV_027197 [Vitis vinifera])

HSP 1 Score: 196.8 bits (499), Expect = 2.9e-47
Identity = 91/110 (82.73%), Postives = 104/110 (94.55%), Query Frame = 1

Query: 1   MLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDSFSGLLLFTVG 60
           +LHS+IALTCGALMMFY++E++VFGHGPE A KLQGS+PHDQLLI+TSDSFSGLLLF +G
Sbjct: 11  ILHSVIALTCGALMMFYTNEIFVFGHGPEIARKLQGSTPHDQLLIRTSDSFSGLLLFAIG 70

Query: 61  FLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLARDWPRQ 111
           FLLFMVAFVKDREFQSFFAKGCV LH+ MA+WR+YFERKLEDLA DWP+Q
Sbjct: 71  FLLFMVAFVKDREFQSFFAKGCVTLHVFMALWRIYFERKLEDLAWDWPKQ 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
W9SMI9_9ROSA1.2e-4779.66Uncharacterized protein OS=Morus notabilis GN=L484_021498 PE=4 SV=1[more]
A5BT07_VITVI2.1e-4782.73Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027197 PE=4 SV=1[more]
F6H246_VITVI2.1e-4783.49Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g02720 PE=4 SV=... [more]
B9N1G9_POPTR3.3e-4577.12Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41060g PE=4 SV=1[more]
M5WHX0_PRUPE3.3e-4575.20Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013009mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G53035.18.5e-3761.02 unknown protein[more]
AT3G15358.15.5e-3660.17 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659112034|ref|XP_008456033.1|5.9e-56100.00PREDICTED: uncharacterized protein LOC103496084 [Cucumis melo][more]
gi|778680327|ref|XP_011651290.1|1.9e-5497.27PREDICTED: uncharacterized protein LOC101222658 [Cucumis sativus][more]
gi|1009139855|ref|XP_015887338.1|2.7e-4880.51PREDICTED: uncharacterized protein LOC107422415 [Ziziphus jujuba][more]
gi|703162146|ref|XP_010112977.1|1.7e-4779.66hypothetical protein L484_021498 [Morus notabilis][more]
gi|147801862|emb|CAN74977.1|2.9e-4782.73hypothetical protein VITISV_027197 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006825 copper ion transport
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005758 mitochondrial intermembrane space
cellular_component GO:0005575 cellular_component
molecular_function GO:0016531 copper chaperone activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G001470.1Lsi05G001470.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34274FAMILY NOT NAMEDcoord: 1..111
score: 8.6