CmoCh16G004280 (gene) Cucurbita moschata (Rifu)

NameCmoCh16G004280
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTransmembrane protein, putative
LocationCmo_Chr16 : 2038008 .. 2038445 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCATCTGGGGGGTTTTTGTTAATCTGTATGCTTCATTCTCTGATTGCTTTAACTTGTGGAGCGTTAATGATGTTTTACTCCCACGAGGTCTATGTGTTTGGCCATGGCCCTGAAACAGCGATCAAGCTGCAGGGATCTAGCTCCCACGATCAGCTTCTGATAAGGACATCTGATTCCTTCTCTGGTTTGCTTCTCTTTACTGTTGGGTTTCTTTTATTCATGGTGGCATTTGTCAAAGATAGAGAGTTTCAAAGCTTCTTTGCTAAAGGATGCGTGTTGCTTCACCTTGCCATGGCCATATGGAGAGTTTATTTCGAGAGAAAGCTTGAGGATCTCGCCCAAGATTGGCCTCGACAGGTCGTTGGGGATGTTACATTGGCATTGTCATGGGTCTTCTTTCTTGTGTATTCATGGAGAGAAAAGTACGATTAA

mRNA sequence

ATGGCATCATCTGGGGGGTTTTTGTTAATCTGTATGCTTCATTCTCTGATTGCTTTAACTTGTGGAGCGTTAATGATGTTTTACTCCCACGAGGTCTATGTGTTTGGCCATGGCCCTGAAACAGCGATCAAGCTGCAGGGATCTAGCTCCCACGATCAGCTTCTGATAAGGACATCTGATTCCTTCTCTGGTTTGCTTCTCTTTACTGTTGGGTTTCTTTTATTCATGGTGGCATTTGTCAAAGATAGAGAGTTTCAAAGCTTCTTTGCTAAAGGATGCGTGTTGCTTCACCTTGCCATGGCCATATGGAGAGTTTATTTCGAGAGAAAGCTTGAGGATCTCGCCCAAGATTGGCCTCGACAGGTCGTTGGGGATGTTACATTGGCATTGTCATGGGTCTTCTTTCTTGTGTATTCATGGAGAGAAAAGTACGATTAA

Coding sequence (CDS)

ATGGCATCATCTGGGGGGTTTTTGTTAATCTGTATGCTTCATTCTCTGATTGCTTTAACTTGTGGAGCGTTAATGATGTTTTACTCCCACGAGGTCTATGTGTTTGGCCATGGCCCTGAAACAGCGATCAAGCTGCAGGGATCTAGCTCCCACGATCAGCTTCTGATAAGGACATCTGATTCCTTCTCTGGTTTGCTTCTCTTTACTGTTGGGTTTCTTTTATTCATGGTGGCATTTGTCAAAGATAGAGAGTTTCAAAGCTTCTTTGCTAAAGGATGCGTGTTGCTTCACCTTGCCATGGCCATATGGAGAGTTTATTTCGAGAGAAAGCTTGAGGATCTCGCCCAAGATTGGCCTCGACAGGTCGTTGGGGATGTTACATTGGCATTGTCATGGGTCTTCTTTCTTGTGTATTCATGGAGAGAAAAGTACGATTAA
BLAST of CmoCh16G004280 vs. TrEMBL
Match: W9SMI9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021498 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.5e-62
Identity = 115/140 (82.14%), Postives = 127/140 (90.71%), Query Frame = 1

Query: 6   GFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSSHDQLLIRTSDSFSGL 65
           GF ++C+LHSL+ALTCG LMMFYS+E+Y+FGHG ETA KLQGS+ HDQLL RTSDSFSGL
Sbjct: 5   GFFVVCVLHSLVALTCGILMMFYSNELYIFGHGLETARKLQGSTPHDQLLFRTSDSFSGL 64

Query: 66  LLFTVGFLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAQDWPRQVVGD 125
           LLF +GFLLFMVAFVKDREFQSFFAKGCVLLH+AMAIWR  FERKLEDL+ DWPRQVVGD
Sbjct: 65  LLFAIGFLLFMVAFVKDREFQSFFAKGCVLLHIAMAIWRACFERKLEDLSSDWPRQVVGD 124

Query: 126 VTLALSWVFFLVYSWREKYD 146
           + LA SWVF LVYSWREKYD
Sbjct: 125 IALAFSWVFLLVYSWREKYD 144

BLAST of CmoCh16G004280 vs. TrEMBL
Match: D7T0E2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0265g00130 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.0e-62
Identity = 113/145 (77.93%), Postives = 130/145 (89.66%), Query Frame = 1

Query: 1   MASSGGFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSSHDQLLIRTSD 60
           M SS GF +IC+LHS+IALTCG LMMFY  E+Y FGHGPETA KL GS+ HDQLLIRTSD
Sbjct: 6   MGSSSGFFVICLLHSIIALTCGGLMMFYMKEIYEFGHGPETATKLLGSTPHDQLLIRTSD 65

Query: 61  SFSGLLLFTVGFLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAQDWPR 120
           SFSGLLLF +GFLLFMVAFV+DR+FQSFFAKGC++LH++MA+WR YFER++EDLA DW R
Sbjct: 66  SFSGLLLFAIGFLLFMVAFVRDRDFQSFFAKGCIVLHVSMALWRFYFERRVEDLALDWLR 125

Query: 121 QVVGDVTLALSWVFFLVYSWREKYD 146
           Q+VGD+ LALSWVFFLVYSWREKYD
Sbjct: 126 QIVGDILLALSWVFFLVYSWREKYD 150

BLAST of CmoCh16G004280 vs. TrEMBL
Match: A0A067K5H0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20994 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.8e-61
Identity = 116/142 (81.69%), Postives = 129/142 (90.85%), Query Frame = 1

Query: 4   SGGFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSSHDQLLIRTSDSFS 63
           S GF LICMLHSLIALTCGALM+FY++EVYVFGHG E A KL+GS+ HDQLLI+TS+SFS
Sbjct: 3   SSGFSLICMLHSLIALTCGALMVFYTNEVYVFGHGVEVATKLKGSTPHDQLLIQTSESFS 62

Query: 64  GLLLFTVGFLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAQDWPRQVV 123
           GLLLF +GFLLFMVAFVKDREFQSFFAKGC+LLH+++A WRVYFE  LEDLA D PRQVV
Sbjct: 63  GLLLFAIGFLLFMVAFVKDREFQSFFAKGCILLHVSVAFWRVYFEWMLEDLANDLPRQVV 122

Query: 124 GDVTLALSWVFFLVYSWREKYD 146
           GD+ LALSWVFFLVYSWREKYD
Sbjct: 123 GDIALALSWVFFLVYSWREKYD 144

BLAST of CmoCh16G004280 vs. TrEMBL
Match: B9N1G9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41060g PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.8e-61
Identity = 115/142 (80.99%), Postives = 129/142 (90.85%), Query Frame = 1

Query: 4   SGGFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSSHDQLLIRTSDSFS 63
           S GF LICMLHS++ALTCGALMMFY++E  VFGHG E A KL+GS+ HDQLL++TSDSFS
Sbjct: 3   SSGFFLICMLHSVMALTCGALMMFYTNEATVFGHGIEIATKLKGSTPHDQLLVQTSDSFS 62

Query: 64  GLLLFTVGFLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAQDWPRQVV 123
           GLLLF +GFLLFMVAFVKDREFQSFFAKGCVLLH++MA WR+YFERKLEDLA+D PR VV
Sbjct: 63  GLLLFAIGFLLFMVAFVKDREFQSFFAKGCVLLHVSMAFWRIYFERKLEDLARDLPRLVV 122

Query: 124 GDVTLALSWVFFLVYSWREKYD 146
           GD+ LALSWVFFLVYSWREKYD
Sbjct: 123 GDIALALSWVFFLVYSWREKYD 144

BLAST of CmoCh16G004280 vs. TrEMBL
Match: F6H246_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g02720 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-60
Identity = 112/137 (81.75%), Postives = 126/137 (91.97%), Query Frame = 1

Query: 9   LICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSSHDQLLIRTSDSFSGLLLF 68
           +I  LHS+IALTCGALMMFY++E++VFGHGPE A KLQGS+ HDQLLIRTSDSFSGLLLF
Sbjct: 10  IIISLHSVIALTCGALMMFYTNEIFVFGHGPEIARKLQGSTPHDQLLIRTSDSFSGLLLF 69

Query: 69  TVGFLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAQDWPRQVVGDVTL 128
            +GFLLFMVAFVKDREFQSFFAKGCV LH+ MA+WR+YFERKLEDLA DWP+QVVGD+ L
Sbjct: 70  AIGFLLFMVAFVKDREFQSFFAKGCVTLHVFMALWRIYFERKLEDLAWDWPKQVVGDIVL 129

Query: 129 ALSWVFFLVYSWREKYD 146
           ALSWVF +VYSWREKYD
Sbjct: 130 ALSWVFLVVYSWREKYD 146

BLAST of CmoCh16G004280 vs. TAIR10
Match: AT1G53035.1 (AT1G53035.1 unknown protein)

HSP 1 Score: 196.8 bits (499), Expect = 9.1e-51
Identity = 91/139 (65.47%), Postives = 115/139 (82.73%), Query Frame = 1

Query: 7   FLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSSHDQLLIRTSDSFSGLL 66
           F +IC+LHS+IALT G LMMFY+ +  +FG G E A KL+GS+ HD+LLI+ S SFSGLL
Sbjct: 12  FRVICILHSIIALTSGTLMMFYTEKASIFGPGSEIASKLKGSTPHDELLIQISQSFSGLL 71

Query: 67  LFTVGFLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAQDWPRQVVGDV 126
           LF +G +LFMV+FVKD+EF SFFA G V+L++ MA+WRV FE K+EDLA +WP+Q +GD+
Sbjct: 72  LFAIGLVLFMVSFVKDKEFHSFFAGGSVILYVLMAMWRVLFEWKIEDLAYEWPKQALGDI 131

Query: 127 TLALSWVFFLVYSWREKYD 146
            LA+SWVFFLVYSWREKYD
Sbjct: 132 ALAISWVFFLVYSWREKYD 150

BLAST of CmoCh16G004280 vs. TAIR10
Match: AT3G15358.1 (AT3G15358.1 unknown protein)

HSP 1 Score: 192.2 bits (487), Expect = 2.2e-49
Identity = 89/139 (64.03%), Postives = 114/139 (82.01%), Query Frame = 1

Query: 7   FLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSSHDQLLIRTSDSFSGLL 66
           F +IC+LHS+IALT G LMMFY+ +  +FGHG + A KL+GS+ HD+ LI+ S SFSGLL
Sbjct: 6   FRVICILHSIIALTSGTLMMFYTEKASIFGHGSDIANKLKGSTPHDEQLIQISQSFSGLL 65

Query: 67  LFTVGFLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAQDWPRQVVGDV 126
           LF +G +LFMV+FVKDREF SFFA G V+L++ MA+WRV FE K+EDLA + P+Q +GD+
Sbjct: 66  LFAIGLVLFMVSFVKDREFHSFFAAGSVILYMVMALWRVMFEWKIEDLAFECPKQALGDI 125

Query: 127 TLALSWVFFLVYSWREKYD 146
            LA+SWVFFLVY+WREKYD
Sbjct: 126 ALAVSWVFFLVYTWREKYD 144

BLAST of CmoCh16G004280 vs. NCBI nr
Match: gi|659112034|ref|XP_008456033.1| (PREDICTED: uncharacterized protein LOC103496084 [Cucumis melo])

HSP 1 Score: 282.7 bits (722), Expect = 3.6e-73
Identity = 137/143 (95.80%), Postives = 140/143 (97.90%), Query Frame = 1

Query: 3   SSGGFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSSHDQLLIRTSDSF 62
           +S GF LICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSS HDQLLI+TSDSF
Sbjct: 2   ASSGFFLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDSF 61

Query: 63  SGLLLFTVGFLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAQDWPRQV 122
           SGLLLFTVGFLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLA+DWPRQV
Sbjct: 62  SGLLLFTVGFLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLARDWPRQV 121

Query: 123 VGDVTLALSWVFFLVYSWREKYD 146
           VGDVTLALSWVFFLVYSWREKYD
Sbjct: 122 VGDVTLALSWVFFLVYSWREKYD 144

BLAST of CmoCh16G004280 vs. NCBI nr
Match: gi|778680327|ref|XP_011651290.1| (PREDICTED: uncharacterized protein LOC101222658 [Cucumis sativus])

HSP 1 Score: 277.3 bits (708), Expect = 1.5e-71
Identity = 134/143 (93.71%), Postives = 138/143 (96.50%), Query Frame = 1

Query: 3   SSGGFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSSHDQLLIRTSDSF 62
           +S GF LICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSS HDQLLI+TSDSF
Sbjct: 2   TSSGFCLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDSF 61

Query: 63  SGLLLFTVGFLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAQDWPRQV 122
           SGLLLFTVG LLFMVAFV+DREFQSFFAKGCVLLHL MAIWRVYFERKLEDLA+DWPRQV
Sbjct: 62  SGLLLFTVGLLLFMVAFVRDREFQSFFAKGCVLLHLGMAIWRVYFERKLEDLARDWPRQV 121

Query: 123 VGDVTLALSWVFFLVYSWREKYD 146
           VGDVTLALSWVFFLVYSWREKYD
Sbjct: 122 VGDVTLALSWVFFLVYSWREKYD 144

BLAST of CmoCh16G004280 vs. NCBI nr
Match: gi|1009139855|ref|XP_015887338.1| (PREDICTED: uncharacterized protein LOC107422415 [Ziziphus jujuba])

HSP 1 Score: 252.3 bits (643), Expect = 5.2e-64
Identity = 118/143 (82.52%), Postives = 129/143 (90.21%), Query Frame = 1

Query: 3   SSGGFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSSHDQLLIRTSDSF 62
           S  GF L+CMLHSL+ALTCGALMMFYS+E Y FGHG ETA KLQGS+ HDQLL+RTSDSF
Sbjct: 2   SLSGFFLVCMLHSLVALTCGALMMFYSNEFYAFGHGSETAHKLQGSTPHDQLLVRTSDSF 61

Query: 63  SGLLLFTVGFLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAQDWPRQV 122
           SGLLLF +G LLFMVAFVKDREFQSFFAKGC+LLH+AMA+WRVYFER LEDLA DWPRQV
Sbjct: 62  SGLLLFVIGCLLFMVAFVKDREFQSFFAKGCILLHIAMALWRVYFERNLEDLAWDWPRQV 121

Query: 123 VGDVTLALSWVFFLVYSWREKYD 146
           VGD+ LALSWV+ LVYSWREKYD
Sbjct: 122 VGDIALALSWVYLLVYSWREKYD 144

BLAST of CmoCh16G004280 vs. NCBI nr
Match: gi|1000942052|ref|XP_015582414.1| (PREDICTED: uncharacterized protein LOC8273573 [Ricinus communis])

HSP 1 Score: 247.7 bits (631), Expect = 1.3e-62
Identity = 117/143 (81.82%), Postives = 131/143 (91.61%), Query Frame = 1

Query: 3   SSGGFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSSHDQLLIRTSDSF 62
           +S GFLLICMLHSL+ALTCGALMMFY++E+ VFGHG E A KL+GS+ HDQLLI+TSDSF
Sbjct: 2   ASSGFLLICMLHSLVALTCGALMMFYTNEISVFGHGIEVATKLKGSTLHDQLLIQTSDSF 61

Query: 63  SGLLLFTVGFLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAQDWPRQV 122
           SGLLLF +GFLLFMVAF+KDREFQSFFAKGCVLLH++MAIWR+YFERKLEDLA D PR V
Sbjct: 62  SGLLLFAIGFLLFMVAFIKDREFQSFFAKGCVLLHVSMAIWRIYFERKLEDLAHDLPRLV 121

Query: 123 VGDVTLALSWVFFLVYSWREKYD 146
           VGD+ L LSWVFFLVYSWREKYD
Sbjct: 122 VGDIVLGLSWVFFLVYSWREKYD 144

BLAST of CmoCh16G004280 vs. NCBI nr
Match: gi|703162146|ref|XP_010112977.1| (hypothetical protein L484_021498 [Morus notabilis])

HSP 1 Score: 246.9 bits (629), Expect = 2.2e-62
Identity = 115/140 (82.14%), Postives = 127/140 (90.71%), Query Frame = 1

Query: 6   GFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSSHDQLLIRTSDSFSGL 65
           GF ++C+LHSL+ALTCG LMMFYS+E+Y+FGHG ETA KLQGS+ HDQLL RTSDSFSGL
Sbjct: 5   GFFVVCVLHSLVALTCGILMMFYSNELYIFGHGLETARKLQGSTPHDQLLFRTSDSFSGL 64

Query: 66  LLFTVGFLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAQDWPRQVVGD 125
           LLF +GFLLFMVAFVKDREFQSFFAKGCVLLH+AMAIWR  FERKLEDL+ DWPRQVVGD
Sbjct: 65  LLFAIGFLLFMVAFVKDREFQSFFAKGCVLLHIAMAIWRACFERKLEDLSSDWPRQVVGD 124

Query: 126 VTLALSWVFFLVYSWREKYD 146
           + LA SWVF LVYSWREKYD
Sbjct: 125 IALAFSWVFLLVYSWREKYD 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
W9SMI9_9ROSA1.5e-6282.14Uncharacterized protein OS=Morus notabilis GN=L484_021498 PE=4 SV=1[more]
D7T0E2_VITVI2.0e-6277.93Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0265g00130 PE=4 SV=... [more]
A0A067K5H0_JATCU2.8e-6181.69Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20994 PE=4 SV=1[more]
B9N1G9_POPTR2.8e-6180.99Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41060g PE=4 SV=1[more]
F6H246_VITVI1.1e-6081.75Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g02720 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT1G53035.19.1e-5165.47 unknown protein[more]
AT3G15358.12.2e-4964.03 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659112034|ref|XP_008456033.1|3.6e-7395.80PREDICTED: uncharacterized protein LOC103496084 [Cucumis melo][more]
gi|778680327|ref|XP_011651290.1|1.5e-7193.71PREDICTED: uncharacterized protein LOC101222658 [Cucumis sativus][more]
gi|1009139855|ref|XP_015887338.1|5.2e-6482.52PREDICTED: uncharacterized protein LOC107422415 [Ziziphus jujuba][more]
gi|1000942052|ref|XP_015582414.1|1.3e-6281.82PREDICTED: uncharacterized protein LOC8273573 [Ricinus communis][more]
gi|703162146|ref|XP_010112977.1|2.2e-6282.14hypothetical protein L484_021498 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006825 copper ion transport
biological_process GO:0008150 biological_process
cellular_component GO:0005758 mitochondrial intermembrane space
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016531 copper chaperone activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G004280.1CmoCh16G004280.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34274FAMILY NOT NAMEDcoord: 1..145
score: 1.9E