CmoCh04G005810 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G005810
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTransmembrane protein, putative
LocationCmo_Chr04 : 2902092 .. 2902526 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCATCTGGGTTTTTGTTAATTTGTATGCTTCATTCTCTGATTGCTTTAACATGTGGAGCCTTAATGATGTTTTATTCCCACGAGGTCTATGTGTTTGGCCATGGCCCTGAGACTGCAATCAAGCTGCAGGGATCTAGCCCTCGTGATCAGCTTCTGATAAAAACATCTGATTCCTTCTCTGGTTTGCTTCTCTTTACTGTTGGGTTTCTTTTATTCATGGTGGCTTTTGTCAAAGACAGAGACTTCCAAAGCTTCTTTGCTAAAGGGTGCGTGTTGCTTCACTTAGCTATGGCCATATGGAGAGTTTACTTCGAGAGGAAGCTCGAAGATCTTGCTAAAGATTGGCCTCGACAGGTCGTTGGGGATGTCACATTGGCATTGTCATGGGTTTTCTTTCTTATGTATTCATGGAGAGAAAAGTATGATTAA

mRNA sequence

ATGGCATCATCTGGGTTTTTGTTAATTTGTATGCTTCATTCTCTGATTGCTTTAACATGTGGAGCCTTAATGATGTTTTATTCCCACGAGGTCTATGTGTTTGGCCATGGCCCTGAGACTGCAATCAAGCTGCAGGGATCTAGCCCTCGTGATCAGCTTCTGATAAAAACATCTGATTCCTTCTCTGGTTTGCTTCTCTTTACTGTTGGGTTTCTTTTATTCATGGTGGCTTTTGTCAAAGACAGAGACTTCCAAAGCTTCTTTGCTAAAGGGTGCGTGTTGCTTCACTTAGCTATGGCCATATGGAGAGTTTACTTCGAGAGGAAGCTCGAAGATCTTGCTAAAGATTGGCCTCGACAGGTCGTTGGGGATGTCACATTGGCATTGTCATGGGTTTTCTTTCTTATGTATTCATGGAGAGAAAAGTATGATTAA

Coding sequence (CDS)

ATGGCATCATCTGGGTTTTTGTTAATTTGTATGCTTCATTCTCTGATTGCTTTAACATGTGGAGCCTTAATGATGTTTTATTCCCACGAGGTCTATGTGTTTGGCCATGGCCCTGAGACTGCAATCAAGCTGCAGGGATCTAGCCCTCGTGATCAGCTTCTGATAAAAACATCTGATTCCTTCTCTGGTTTGCTTCTCTTTACTGTTGGGTTTCTTTTATTCATGGTGGCTTTTGTCAAAGACAGAGACTTCCAAAGCTTCTTTGCTAAAGGGTGCGTGTTGCTTCACTTAGCTATGGCCATATGGAGAGTTTACTTCGAGAGGAAGCTCGAAGATCTTGCTAAAGATTGGCCTCGACAGGTCGTTGGGGATGTCACATTGGCATTGTCATGGGTTTTCTTTCTTATGTATTCATGGAGAGAAAAGTATGATTAA
BLAST of CmoCh04G005810 vs. TrEMBL
Match: W9SMI9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021498 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.0e-62
Identity = 114/144 (79.17%), Postives = 129/144 (89.58%), Query Frame = 1

Query: 1   MASSGFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPRDQLLIKTSDS 60
           M  SGF ++C+LHSL+ALTCG LMMFYS+E+Y+FGHG ETA KLQGS+P DQLL +TSDS
Sbjct: 1   MGLSGFFVVCVLHSLVALTCGILMMFYSNELYIFGHGLETARKLQGSTPHDQLLFRTSDS 60

Query: 61  FSGLLLFTVGFLLFMVAFVKDRDFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAKDWPRQ 120
           FSGLLLF +GFLLFMVAFVKDR+FQSFFAKGCVLLH+AMAIWR  FERKLEDL+ DWPRQ
Sbjct: 61  FSGLLLFAIGFLLFMVAFVKDREFQSFFAKGCVLLHIAMAIWRACFERKLEDLSSDWPRQ 120

Query: 121 VVGDVTLALSWVFFLMYSWREKYD 145
           VVGD+ LA SWVF L+YSWREKYD
Sbjct: 121 VVGDIALAFSWVFLLVYSWREKYD 144

BLAST of CmoCh04G005810 vs. TrEMBL
Match: D7T0E2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0265g00130 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 5.7e-62
Identity = 111/143 (77.62%), Postives = 130/143 (90.91%), Query Frame = 1

Query: 2   ASSGFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPRDQLLIKTSDSF 61
           +SSGF +IC+LHS+IALTCG LMMFY  E+Y FGHGPETA KL GS+P DQLLI+TSDSF
Sbjct: 8   SSSGFFVICLLHSIIALTCGGLMMFYMKEIYEFGHGPETATKLLGSTPHDQLLIRTSDSF 67

Query: 62  SGLLLFTVGFLLFMVAFVKDRDFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAKDWPRQV 121
           SGLLLF +GFLLFMVAFV+DRDFQSFFAKGC++LH++MA+WR YFER++EDLA DW RQ+
Sbjct: 68  SGLLLFAIGFLLFMVAFVRDRDFQSFFAKGCIVLHVSMALWRFYFERRVEDLALDWLRQI 127

Query: 122 VGDVTLALSWVFFLMYSWREKYD 145
           VGD+ LALSWVFFL+YSWREKYD
Sbjct: 128 VGDILLALSWVFFLVYSWREKYD 150

BLAST of CmoCh04G005810 vs. TrEMBL
Match: B9N1G9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41060g PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 7.4e-62
Identity = 115/144 (79.86%), Postives = 131/144 (90.97%), Query Frame = 1

Query: 1   MASSGFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPRDQLLIKTSDS 60
           M SSGF LICMLHS++ALTCGALMMFY++E  VFGHG E A KL+GS+P DQLL++TSDS
Sbjct: 1   MGSSGFFLICMLHSVMALTCGALMMFYTNEATVFGHGIEIATKLKGSTPHDQLLVQTSDS 60

Query: 61  FSGLLLFTVGFLLFMVAFVKDRDFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAKDWPRQ 120
           FSGLLLF +GFLLFMVAFVKDR+FQSFFAKGCVLLH++MA WR+YFERKLEDLA+D PR 
Sbjct: 61  FSGLLLFAIGFLLFMVAFVKDREFQSFFAKGCVLLHVSMAFWRIYFERKLEDLARDLPRL 120

Query: 121 VVGDVTLALSWVFFLMYSWREKYD 145
           VVGD+ LALSWVFFL+YSWREKYD
Sbjct: 121 VVGDIALALSWVFFLVYSWREKYD 144

BLAST of CmoCh04G005810 vs. TrEMBL
Match: A0A067K5H0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20994 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 9.7e-62
Identity = 116/144 (80.56%), Postives = 131/144 (90.97%), Query Frame = 1

Query: 1   MASSGFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPRDQLLIKTSDS 60
           M SSGF LICMLHSLIALTCGALM+FY++EVYVFGHG E A KL+GS+P DQLLI+TS+S
Sbjct: 1   MGSSGFSLICMLHSLIALTCGALMVFYTNEVYVFGHGVEVATKLKGSTPHDQLLIQTSES 60

Query: 61  FSGLLLFTVGFLLFMVAFVKDRDFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAKDWPRQ 120
           FSGLLLF +GFLLFMVAFVKDR+FQSFFAKGC+LLH+++A WRVYFE  LEDLA D PRQ
Sbjct: 61  FSGLLLFAIGFLLFMVAFVKDREFQSFFAKGCILLHVSVAFWRVYFEWMLEDLANDLPRQ 120

Query: 121 VVGDVTLALSWVFFLMYSWREKYD 145
           VVGD+ LALSWVFFL+YSWREKYD
Sbjct: 121 VVGDIALALSWVFFLVYSWREKYD 144

BLAST of CmoCh04G005810 vs. TrEMBL
Match: A0A118K187_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_019503 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.4e-60
Identity = 112/144 (77.78%), Postives = 127/144 (88.19%), Query Frame = 1

Query: 1   MASSGFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPRDQLLIKTSDS 60
           M SSGF  ICM++S++AL+CG LMMFYSHEV+ F HG ETAIKL GS+P DQLLI+TSDS
Sbjct: 1   MGSSGFFSICMIYSIVALSCGTLMMFYSHEVFAFSHGNETAIKLLGSTPHDQLLIQTSDS 60

Query: 61  FSGLLLFTVGFLLFMVAFVKDRDFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAKDWPRQ 120
           FSGLLLF VG LLFMVAFVKDRDFQSFFAKGCVLLH+AMA+WR+YFERKLE+L +DW R 
Sbjct: 61  FSGLLLFAVGILLFMVAFVKDRDFQSFFAKGCVLLHIAMAVWRIYFERKLEELGRDWLRL 120

Query: 121 VVGDVTLALSWVFFLMYSWREKYD 145
           V+GD  LALSWV FL+YSWREKYD
Sbjct: 121 VLGDFILALSWVLFLVYSWREKYD 144

BLAST of CmoCh04G005810 vs. TAIR10
Match: AT1G53035.1 (AT1G53035.1 unknown protein)

HSP 1 Score: 195.3 bits (495), Expect = 2.6e-50
Identity = 91/144 (63.19%), Postives = 117/144 (81.25%), Query Frame = 1

Query: 1   MASSGFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPRDQLLIKTSDS 60
           M  S F +IC+LHS+IALT G LMMFY+ +  +FG G E A KL+GS+P D+LLI+ S S
Sbjct: 7   MNPSLFRVICILHSIIALTSGTLMMFYTEKASIFGPGSEIASKLKGSTPHDELLIQISQS 66

Query: 61  FSGLLLFTVGFLLFMVAFVKDRDFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAKDWPRQ 120
           FSGLLLF +G +LFMV+FVKD++F SFFA G V+L++ MA+WRV FE K+EDLA +WP+Q
Sbjct: 67  FSGLLLFAIGLVLFMVSFVKDKEFHSFFAGGSVILYVLMAMWRVLFEWKIEDLAYEWPKQ 126

Query: 121 VVGDVTLALSWVFFLMYSWREKYD 145
            +GD+ LA+SWVFFL+YSWREKYD
Sbjct: 127 ALGDIALAISWVFFLVYSWREKYD 150

BLAST of CmoCh04G005810 vs. TAIR10
Match: AT3G15358.1 (AT3G15358.1 unknown protein)

HSP 1 Score: 190.7 bits (483), Expect = 6.5e-49
Identity = 89/144 (61.81%), Postives = 116/144 (80.56%), Query Frame = 1

Query: 1   MASSGFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPRDQLLIKTSDS 60
           M S  F +IC+LHS+IALT G LMMFY+ +  +FGHG + A KL+GS+P D+ LI+ S S
Sbjct: 1   MNSYLFRVICILHSIIALTSGTLMMFYTEKASIFGHGSDIANKLKGSTPHDEQLIQISQS 60

Query: 61  FSGLLLFTVGFLLFMVAFVKDRDFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAKDWPRQ 120
           FSGLLLF +G +LFMV+FVKDR+F SFFA G V+L++ MA+WRV FE K+EDLA + P+Q
Sbjct: 61  FSGLLLFAIGLVLFMVSFVKDREFHSFFAAGSVILYMVMALWRVMFEWKIEDLAFECPKQ 120

Query: 121 VVGDVTLALSWVFFLMYSWREKYD 145
            +GD+ LA+SWVFFL+Y+WREKYD
Sbjct: 121 ALGDIALAVSWVFFLVYTWREKYD 144

BLAST of CmoCh04G005810 vs. NCBI nr
Match: gi|659112034|ref|XP_008456033.1| (PREDICTED: uncharacterized protein LOC103496084 [Cucumis melo])

HSP 1 Score: 286.6 bits (732), Expect = 2.4e-74
Identity = 139/144 (96.53%), Postives = 142/144 (98.61%), Query Frame = 1

Query: 1   MASSGFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPRDQLLIKTSDS 60
           MASSGF LICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSP DQLLIKTSDS
Sbjct: 1   MASSGFFLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDS 60

Query: 61  FSGLLLFTVGFLLFMVAFVKDRDFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAKDWPRQ 120
           FSGLLLFTVGFLLFMVAFVKDR+FQSFFAKGCVLLHLAMAIWRVYFERKLEDLA+DWPRQ
Sbjct: 61  FSGLLLFTVGFLLFMVAFVKDREFQSFFAKGCVLLHLAMAIWRVYFERKLEDLARDWPRQ 120

Query: 121 VVGDVTLALSWVFFLMYSWREKYD 145
           VVGDVTLALSWVFFL+YSWREKYD
Sbjct: 121 VVGDVTLALSWVFFLVYSWREKYD 144

BLAST of CmoCh04G005810 vs. NCBI nr
Match: gi|778680327|ref|XP_011651290.1| (PREDICTED: uncharacterized protein LOC101222658 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 3.0e-72
Identity = 135/144 (93.75%), Postives = 139/144 (96.53%), Query Frame = 1

Query: 1   MASSGFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPRDQLLIKTSDS 60
           M SSGF LICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSP DQLLIKTSDS
Sbjct: 1   MTSSGFCLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPHDQLLIKTSDS 60

Query: 61  FSGLLLFTVGFLLFMVAFVKDRDFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAKDWPRQ 120
           FSGLLLFTVG LLFMVAFV+DR+FQSFFAKGCVLLHL MAIWRVYFERKLEDLA+DWPRQ
Sbjct: 61  FSGLLLFTVGLLLFMVAFVRDREFQSFFAKGCVLLHLGMAIWRVYFERKLEDLARDWPRQ 120

Query: 121 VVGDVTLALSWVFFLMYSWREKYD 145
           VVGDVTLALSWVFFL+YSWREKYD
Sbjct: 121 VVGDVTLALSWVFFLVYSWREKYD 144

BLAST of CmoCh04G005810 vs. NCBI nr
Match: gi|1009139855|ref|XP_015887338.1| (PREDICTED: uncharacterized protein LOC107422415 [Ziziphus jujuba])

HSP 1 Score: 250.8 bits (639), Expect = 1.5e-63
Identity = 116/144 (80.56%), Postives = 131/144 (90.97%), Query Frame = 1

Query: 1   MASSGFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPRDQLLIKTSDS 60
           M+ SGF L+CMLHSL+ALTCGALMMFYS+E Y FGHG ETA KLQGS+P DQLL++TSDS
Sbjct: 1   MSLSGFFLVCMLHSLVALTCGALMMFYSNEFYAFGHGSETAHKLQGSTPHDQLLVRTSDS 60

Query: 61  FSGLLLFTVGFLLFMVAFVKDRDFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAKDWPRQ 120
           FSGLLLF +G LLFMVAFVKDR+FQSFFAKGC+LLH+AMA+WRVYFER LEDLA DWPRQ
Sbjct: 61  FSGLLLFVIGCLLFMVAFVKDREFQSFFAKGCILLHIAMALWRVYFERNLEDLAWDWPRQ 120

Query: 121 VVGDVTLALSWVFFLMYSWREKYD 145
           VVGD+ LALSWV+ L+YSWREKYD
Sbjct: 121 VVGDIALALSWVYLLVYSWREKYD 144

BLAST of CmoCh04G005810 vs. NCBI nr
Match: gi|720013510|ref|XP_010260202.1| (PREDICTED: uncharacterized protein LOC104599389 [Nelumbo nucifera])

HSP 1 Score: 248.1 bits (632), Expect = 9.7e-63
Identity = 115/144 (79.86%), Postives = 131/144 (90.97%), Query Frame = 1

Query: 1   MASSGFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPRDQLLIKTSDS 60
           M SSGF +IC+LHS++ALTCGALMMFY  E+ V GHG ETA KL GS+P DQLLIKTSDS
Sbjct: 1   MGSSGFFVICLLHSIVALTCGALMMFYQDEISVVGHGTETASKLLGSTPHDQLLIKTSDS 60

Query: 61  FSGLLLFTVGFLLFMVAFVKDRDFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAKDWPRQ 120
           F+GLLLF +GFLLFMVAFVKDR+FQSFFAKGCVLLH+++++WRVYFERKLEDLA DWPRQ
Sbjct: 61  FAGLLLFVIGFLLFMVAFVKDREFQSFFAKGCVLLHVSVSLWRVYFERKLEDLAHDWPRQ 120

Query: 121 VVGDVTLALSWVFFLMYSWREKYD 145
           VVGD+ LALSWVFFL+YSWREKYD
Sbjct: 121 VVGDIALALSWVFFLVYSWREKYD 144

BLAST of CmoCh04G005810 vs. NCBI nr
Match: gi|703162146|ref|XP_010112977.1| (hypothetical protein L484_021498 [Morus notabilis])

HSP 1 Score: 246.5 bits (628), Expect = 2.8e-62
Identity = 114/144 (79.17%), Postives = 129/144 (89.58%), Query Frame = 1

Query: 1   MASSGFLLICMLHSLIALTCGALMMFYSHEVYVFGHGPETAIKLQGSSPRDQLLIKTSDS 60
           M  SGF ++C+LHSL+ALTCG LMMFYS+E+Y+FGHG ETA KLQGS+P DQLL +TSDS
Sbjct: 1   MGLSGFFVVCVLHSLVALTCGILMMFYSNELYIFGHGLETARKLQGSTPHDQLLFRTSDS 60

Query: 61  FSGLLLFTVGFLLFMVAFVKDRDFQSFFAKGCVLLHLAMAIWRVYFERKLEDLAKDWPRQ 120
           FSGLLLF +GFLLFMVAFVKDR+FQSFFAKGCVLLH+AMAIWR  FERKLEDL+ DWPRQ
Sbjct: 61  FSGLLLFAIGFLLFMVAFVKDREFQSFFAKGCVLLHIAMAIWRACFERKLEDLSSDWPRQ 120

Query: 121 VVGDVTLALSWVFFLMYSWREKYD 145
           VVGD+ LA SWVF L+YSWREKYD
Sbjct: 121 VVGDIALAFSWVFLLVYSWREKYD 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
W9SMI9_9ROSA2.0e-6279.17Uncharacterized protein OS=Morus notabilis GN=L484_021498 PE=4 SV=1[more]
D7T0E2_VITVI5.7e-6277.62Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0265g00130 PE=4 SV=... [more]
B9N1G9_POPTR7.4e-6279.86Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41060g PE=4 SV=1[more]
A0A067K5H0_JATCU9.7e-6280.56Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20994 PE=4 SV=1[more]
A0A118K187_CYNCS2.4e-6077.78Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_019503 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT1G53035.12.6e-5063.19 unknown protein[more]
AT3G15358.16.5e-4961.81 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659112034|ref|XP_008456033.1|2.4e-7496.53PREDICTED: uncharacterized protein LOC103496084 [Cucumis melo][more]
gi|778680327|ref|XP_011651290.1|3.0e-7293.75PREDICTED: uncharacterized protein LOC101222658 [Cucumis sativus][more]
gi|1009139855|ref|XP_015887338.1|1.5e-6380.56PREDICTED: uncharacterized protein LOC107422415 [Ziziphus jujuba][more]
gi|720013510|ref|XP_010260202.1|9.7e-6379.86PREDICTED: uncharacterized protein LOC104599389 [Nelumbo nucifera][more]
gi|703162146|ref|XP_010112977.1|2.8e-6279.17hypothetical protein L484_021498 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006825 copper ion transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005758 mitochondrial intermembrane space
molecular_function GO:0003674 molecular_function
molecular_function GO:0016531 copper chaperone activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G005810.1CmoCh04G005810.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34274FAMILY NOT NAMEDcoord: 1..144
score: 1.6E