Lsi04G010660 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G010660
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	LOB domain-containing protein 12
Location	chr04 : 12673905 .. 12674935 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGCAATTCGCCGTGCGCCTCATGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCTGATGACCCCCACAAGTTTGCTCTTGTCCATAAAGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGTTCTTCTTCTTCCTTACCTTCTCCATTATTTCGGATTTCGGATTTTGGGTTTTGAGTATATTTTCCAAAAAAAAAAAAAAAAAACAATTCATGAACTTATAAAAGAGTTTTTGCCATTCAAACTGTATCCAACAATTTAACACACAAGTTTTCTCTATTATTTAATTTTCGTCTGTTTTTGTTAATATCTTCATTAATATGAGATTTTTCTCCCTAATTAAAGCTTCTTTTACTTTTTAGTGATTTTTTAAAAAAAAACTAAGCTAATTTTTTTTTTTAAAAAAATAGTTCTTAAAATATAATTTTTGTTTTTTAAATTAAGCCTAAGTAAACAAATTAAGAAGATAACTTTTAAAAATTAAAAATAAAAAACAAAATAATTATAAAACGAAACTAAAATAGGAGTTTTCTCTACTAATTTGAAACCCTTTTTCGAGTAGATTAAACCAATTAGAGAACAATAAATTCTTTTTTTTTTTTCTTTAAAGAAGAAAAAGAATGAATTTTGATATTGATAAATAATATTTAATTATTGAAACAGGAACTGCCAGTGCAGCAAAGAGGCGACGCCGTGATGAGTTTAGTTTATGAGGCAAGTGCAAGAGTGAGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTCTCGCAGCTACAGATGCAATTGGCTGTGGCTCAAGCTGAGATTCTTTGCATCCAAATGCAGCAAGACCACCCTGTTTTCCCAAATTGCCCTCAGATCCACTCCGATGACAAATCCCCCTCTCTTCTACTCCCGCCGCCGTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA

mRNA sequence

ATGGGTGGCAATTCGCCGTGCGCCTCATGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCTGATGACCCCCACAAGTTTGCTCTTGTCCATAAAGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAACTGCCAGTGCAGCAAAGAGGCGACGCCGTGATGAGTTTAGTTTATGAGGCAAGTGCAAGAGTGAGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTCTCGCAGCTACAGATGCAATTGGCTGTGGCTCAAGCTGAGATTCTTTGCATCCAAATGCAGCAAGACCACCCTGTTTTCCCAAATTGCCCTCAGATCCACTCCGATGACAAATCCCCCTCTCTTCTACTCCCGCCGCCGTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA

Coding sequence (CDS)

ATGGGTGGCAATTCGCCGTGCGCCTCATGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCTGATGACCCCCACAAGTTTGCTCTTGTCCATAAAGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAACTGCCAGTGCAGCAAAGAGGCGACGCCGTGATGAGTTTAGTTTATGAGGCAAGTGCAAGAGTGAGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTCTCGCAGCTACAGATGCAATTGGCTGTGGCTCAAGCTGAGATTCTTTGCATCCAAATGCAGCAAGACCACCCTGTTTTCCCAAATTGCCCTCAGATCCACTCCGATGACAAATCCCCCTCTCTTCTACTCCCGCCGCCGTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA

Protein sequence

MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDDKSPSLLLPPPSQCLNFASSPNVIYDTIFGHDIVS

Homology

[Close]

BLAST of Lsi04G010660 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 211.5 bits (537), Expect = 7.1e-54
Identity = 106/133 (79.70%), Postives = 115/133 (86.47%), Query Frame = 1


Query: 3   GNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRGDA 62
           G+SPCASCKLLRRRCAKDCIFAPYFP DDPHKFA+VHKVFGASNVSKMLQELPV QR DA
Sbjct: 5   GSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADA 64

Query: 63  VMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCP 122
           V SLV+EA+ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ +  +  +  
Sbjct: 65  VNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQ 124

Query: 123 QIHSDDKSPSLLL 136
            +  D    +LLL
Sbjct: 125 VLELDQDHKALLL 137

[Close]

BLAST of Lsi04G010660 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 7.8e-45
Identity = 92/163 (56.44%), Postives = 117/163 (71.78%), Query Frame = 1


Query: 2   GGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRGD 61
           G  SPCA+CKLLRRRCA+DC+F+PYFP+D+P KFA VH+VFGASNV+KMLQELP+ QRGD
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 62  AVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ--DHPVFP 121
           AV S+VYEA+ARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++++Q  + P   
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHG 128

Query: 122 NCPQIHSDDKSPSLLLPPPSQCLNFASSPNVIYDTIFGHDIVS 163
            CP   S   SPS     P       S  +++ +   G  + S
Sbjct: 129 LCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of Lsi04G010660 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-36
Identity = 72/111 (64.86%), Postives = 88/111 (79.28%), Query Frame = 1


Query: 5   SPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRGDAVM 64
           SPCA+CK+LRRRCA+ C+ APYFP  DP KF + H+VFGASN+ K LQELP  QR DAV 
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 65  SLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDH 116
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA AQ E++ +Q Q+ +
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSN 142

[Close]

BLAST of Lsi04G010660 vs. Swiss-Prot
Match: LOB_ARATH (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.9e-36
Identity = 72/103 (69.90%), Postives = 83/103 (80.58%), Query Frame = 1


Query: 4   NSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRGDAV 63
           NSPCA+CK LRR+C   CIFAPYFP ++PHKFA VHK+FGASNV+K+L EL   QR DAV
Sbjct: 9   NSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAV 68

Query: 64  MSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 107
            SL YEA ARVRDPVYGCVGAISYLQ QV +LQ +L  A A++
Sbjct: 69  NSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADL 111

[Close]

BLAST of Lsi04G010660 vs. Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2)

HSP 1 Score: 151.8 bits (382), Expect = 6.6e-36
Identity = 71/109 (65.14%), Postives = 86/109 (78.90%), Query Frame = 1


Query: 5   SPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRGDAVM 64
           SPCA+CK+LRRRCA  C+ APYFP  DP KF + H+VFGASN+ K LQELP  QR DAV 
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 65  SLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ 114
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA  Q E++ +Q+Q+
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQR 162

[Close]

BLAST of Lsi04G010660 vs. TrEMBL
Match: A0A0A0KP74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G215140 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 6.0e-84
Identity = 159/167 (95.21%), Postives = 160/167 (95.81%), Query Frame = 1


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFA+VHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDDKSPSLLL----PPPSQCLNF-ASSPNVIYDTIFGHDIVS 163
           CPQIHSDDK  SLLL    PPPSQCLNF ASSPNVIYDTIFGHDIVS
Sbjct: 121 CPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS 167

[Close]

BLAST of Lsi04G010660 vs. TrEMBL
Match: V4TH27_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032929mg PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 9.9e-63
Identity = 133/168 (79.17%), Postives = 143/168 (85.12%), Query Frame = 1


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFP DDPHKFA+VHKVFGASNVSKMLQELPV QR 
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAV SLVYEA+ARVRDPVYGCVGAIS+LQNQVSQLQMQLAVA+AEILCIQMQQ+ P+ P 
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQE-PMMPT 120

Query: 121 CPQIHSDDKSPSLLLPPPSQCLNF-ASSPNVIYD-----TIFGHDIVS 163
            PQI  DDKS  L    P Q LNF +SS NVI+D     +IFGHD+VS
Sbjct: 121 -PQIDPDDKSFLLQNNLPHQYLNFTSSSNNVIHDSLKRESIFGHDMVS 166

[Close]

BLAST of Lsi04G010660 vs. TrEMBL
Match: A0A067FN82_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036782mg PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 9.9e-63
Identity = 133/168 (79.17%), Postives = 143/168 (85.12%), Query Frame = 1


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFP DDPHKFA+VHKVFGASNVSKMLQELPV QR 
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAV SLVYEA+ARVRDPVYGCVGAIS+LQNQVSQLQMQLAVA+AEILCIQMQQ+ P+ P 
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQE-PMMPT 120

Query: 121 CPQIHSDDKSPSLLLPPPSQCLNF-ASSPNVIYD-----TIFGHDIVS 163
            PQI  DDKS  L    P Q LNF +SS NVI+D     +IFGHD+VS
Sbjct: 121 -PQIDPDDKSFLLQNNLPHQYLNFTSSSNNVIHDSLKRESIFGHDMVS 166

[Close]

BLAST of Lsi04G010660 vs. TrEMBL
Match: V7D211_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G245800g PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.9e-62
Identity = 129/167 (77.25%), Postives = 140/167 (83.83%), Query Frame = 1


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRG 60
           M GNSPCASCKLLRRRC KDCIFAPYFPS+DP KFALVHKVFGASNVSKMLQELP+QQR 
Sbjct: 17  MAGNSPCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPIQQRA 76

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAV SLVYEA ARVRDPVYGCVGAISYLQNQVS+LQMQLAVAQAEILCIQMQQ+ PV PN
Sbjct: 77  DAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQE-PVMPN 136

Query: 121 CPQIHSDDKSPSLLLPPPSQCLNFASSPNVIYD-----TIFGHDIVS 163
            P++ + D    LL     Q LN+ASS NVIYD     +I+GHD+VS
Sbjct: 137 -PEMENPDHKSYLLHNELPQFLNYASSSNVIYDAVTRESIYGHDLVS 181

[Close]

BLAST of Lsi04G010660 vs. TrEMBL
Match: A0A0L9U9N1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g300200 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.9e-62
Identity = 128/167 (76.65%), Postives = 140/167 (83.83%), Query Frame = 1


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRG 60
           M GNSPCASCKLLRRRC KDCIFAPYFPS+DP KFALVHKVFGASNVSKMLQELP++QR 
Sbjct: 1   MAGNSPCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPIEQRA 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAV SLVYEA ARVRDPVYGCVGAISYLQNQVS+LQMQLAVAQAEILCIQMQQ+ PV PN
Sbjct: 61  DAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQE-PVMPN 120

Query: 121 CPQIHSDDKSPSLLLPPPSQCLNFASSPNVIY-----DTIFGHDIVS 163
            P++ + D+   LL     Q LN+ASS NVIY     D I+GHD+VS
Sbjct: 121 -PEMENPDQKSYLLQNELPQFLNYASSSNVIYDAVSRDNIYGHDMVS 165

[Close]

BLAST of Lsi04G010660 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 211.5 bits (537), Expect = 4.0e-55
Identity = 106/133 (79.70%), Postives = 115/133 (86.47%), Query Frame = 1


Query: 3   GNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRGDA 62
           G+SPCASCKLLRRRCAKDCIFAPYFP DDPHKFA+VHKVFGASNVSKMLQELPV QR DA
Sbjct: 5   GSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADA 64

Query: 63  VMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCP 122
           V SLV+EA+ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ +  +  +  
Sbjct: 65  VNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQ 124

Query: 123 QIHSDDKSPSLLL 136
            +  D    +LLL
Sbjct: 125 VLELDQDHKALLL 137

[Close]

BLAST of Lsi04G010660 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 181.4 bits (459), Expect = 4.4e-46
Identity = 92/163 (56.44%), Postives = 117/163 (71.78%), Query Frame = 1


Query: 2   GGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRGD 61
           G  SPCA+CKLLRRRCA+DC+F+PYFP+D+P KFA VH+VFGASNV+KMLQELP+ QRGD
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 62  AVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ--DHPVFP 121
           AV S+VYEA+ARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++++Q  + P   
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHG 128

Query: 122 NCPQIHSDDKSPSLLLPPPSQCLNFASSPNVIYDTIFGHDIVS 163
            CP   S   SPS     P       S  +++ +   G  + S
Sbjct: 129 LCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of Lsi04G010660 vs. TAIR10
Match: AT1G07900.1 (AT1G07900.1 LOB domain-containing protein 1)

HSP 1 Score: 154.1 bits (388), Expect = 7.5e-38
Identity = 72/111 (64.86%), Postives = 88/111 (79.28%), Query Frame = 1


Query: 5   SPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRGDAVM 64
           SPCA+CK+LRRRCA+ C+ APYFP  DP KF + H+VFGASN+ K LQELP  QR DAV 
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 65  SLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDH 116
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA AQ E++ +Q Q+ +
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSN 142

[Close]

BLAST of Lsi04G010660 vs. TAIR10
Match: AT5G63090.2 (AT5G63090.2 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 152.5 bits (384), Expect = 2.2e-37
Identity = 72/103 (69.90%), Postives = 83/103 (80.58%), Query Frame = 1


Query: 4   NSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRGDAV 63
           NSPCA+CK LRR+C   CIFAPYFP ++PHKFA VHK+FGASNV+K+L EL   QR DAV
Sbjct: 9   NSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAV 68

Query: 64  MSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 107
            SL YEA ARVRDPVYGCVGAISYLQ QV +LQ +L  A A++
Sbjct: 69  NSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADL 111

[Close]

BLAST of Lsi04G010660 vs. TAIR10
Match: AT2G28500.1 (AT2G28500.1 LOB domain-containing protein 11)

HSP 1 Score: 151.8 bits (382), Expect = 3.7e-37
Identity = 71/109 (65.14%), Postives = 86/109 (78.90%), Query Frame = 1


Query: 5   SPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRGDAVM 64
           SPCA+CK+LRRRCA  C+ APYFP  DP KF + H+VFGASN+ K LQELP  QR DAV 
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 65  SLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ 114
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA  Q E++ +Q+Q+
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQR 162

[Close]

BLAST of Lsi04G010660 vs. NCBI nr
Match: gi|659109688|ref|XP_008454827.1| (PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 12-like [Cucumis melo])

HSP 1 Score: 320.1 bits (819), Expect = 2.2e-84
Identity = 160/167 (95.81%), Postives = 161/167 (96.41%), Query Frame = 1


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFA+VHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDDKSPSLLLPPP----SQCLNF-ASSPNVIYDTIFGHDIVS 163
           CPQIHSDDKS SLLLPPP    SQCLNF ASSPNVIYDTIFGHDIVS
Sbjct: 121 CPQIHSDDKSSSLLLPPPSLPXSQCLNFAASSPNVIYDTIFGHDIVS 167

[Close]

BLAST of Lsi04G010660 vs. NCBI nr
Match: gi|449460916|ref|XP_004148190.1| (PREDICTED: LOB domain-containing protein 12-like [Cucumis sativus])

HSP 1 Score: 318.2 bits (814), Expect = 8.5e-84
Identity = 159/167 (95.21%), Postives = 160/167 (95.81%), Query Frame = 1


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFA+VHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDDKSPSLLL----PPPSQCLNF-ASSPNVIYDTIFGHDIVS 163
           CPQIHSDDK  SLLL    PPPSQCLNF ASSPNVIYDTIFGHDIVS
Sbjct: 121 CPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS 167

[Close]

BLAST of Lsi04G010660 vs. NCBI nr
Match: gi|567886568|ref|XP_006435806.1| (hypothetical protein CICLE_v10032929mg [Citrus clementina])

HSP 1 Score: 247.7 bits (631), Expect = 1.4e-62
Identity = 133/168 (79.17%), Postives = 143/168 (85.12%), Query Frame = 1


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFP DDPHKFA+VHKVFGASNVSKMLQELPV QR 
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAV SLVYEA+ARVRDPVYGCVGAIS+LQNQVSQLQMQLAVA+AEILCIQMQQ+ P+ P 
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQE-PMMPT 120

Query: 121 CPQIHSDDKSPSLLLPPPSQCLNF-ASSPNVIYD-----TIFGHDIVS 163
            PQI  DDKS  L    P Q LNF +SS NVI+D     +IFGHD+VS
Sbjct: 121 -PQIDPDDKSFLLQNNLPHQYLNFTSSSNNVIHDSLKRESIFGHDMVS 166

[Close]

BLAST of Lsi04G010660 vs. NCBI nr
Match: gi|593801078|ref|XP_007163576.1| (hypothetical protein PHAVU_001G245800g [Phaseolus vulgaris])

HSP 1 Score: 246.1 bits (627), Expect = 4.1e-62
Identity = 129/167 (77.25%), Postives = 140/167 (83.83%), Query Frame = 1


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRG 60
           M GNSPCASCKLLRRRC KDCIFAPYFPS+DP KFALVHKVFGASNVSKMLQELP+QQR 
Sbjct: 17  MAGNSPCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPIQQRA 76

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAV SLVYEA ARVRDPVYGCVGAISYLQNQVS+LQMQLAVAQAEILCIQMQQ+ PV PN
Sbjct: 77  DAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQE-PVMPN 136

Query: 121 CPQIHSDDKSPSLLLPPPSQCLNFASSPNVIYD-----TIFGHDIVS 163
            P++ + D    LL     Q LN+ASS NVIYD     +I+GHD+VS
Sbjct: 137 -PEMENPDHKSYLLHNELPQFLNYASSSNVIYDAVTRESIYGHDLVS 181

[Close]

BLAST of Lsi04G010660 vs. NCBI nr
Match: gi|920696395|gb|KOM39620.1| (hypothetical protein LR48_Vigan03g300200 [Vigna angularis])

HSP 1 Score: 245.4 bits (625), Expect = 7.0e-62
Identity = 128/167 (76.65%), Postives = 140/167 (83.83%), Query Frame = 1


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRG 60
           M GNSPCASCKLLRRRC KDCIFAPYFPS+DP KFALVHKVFGASNVSKMLQELP++QR 
Sbjct: 1   MAGNSPCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPIEQRA 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAV SLVYEA ARVRDPVYGCVGAISYLQNQVS+LQMQLAVAQAEILCIQMQQ+ PV PN
Sbjct: 61  DAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQE-PVMPN 120

Query: 121 CPQIHSDDKSPSLLLPPPSQCLNFASSPNVIY-----DTIFGHDIVS 163
            P++ + D+   LL     Q LN+ASS NVIY     D I+GHD+VS
Sbjct: 121 -PEMENPDQKSYLLQNELPQFLNYASSSNVIYDAVSRDNIYGHDMVS 165

The following BLAST results are available for this feature:

BLAST of Lsi04G010660 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD12_ARATH	7.1e-54	79.70	LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2	[more]
LBD4_ARATH	7.8e-45	56.44	LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1	[more]
LBD1_ARATH	1.3e-36	64.86	LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1	[more]
LOB_ARATH	3.9e-36	69.90	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1	[more]
LBD11_ARATH	6.6e-36	65.14	LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2	[more]

BLAST of Lsi04G010660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KP74_CUCSA	6.0e-84	95.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G215140 PE=4 SV=1	[more]
V4TH27_9ROSI	9.9e-63	79.17	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032929mg PE=4 SV=1	[more]
A0A067FN82_CITSI	9.9e-63	79.17	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036782mg PE=4 SV=1	[more]
V7D211_PHAVU	2.9e-62	77.25	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G245800g PE=4 SV=1	[more]
A0A0L9U9N1_PHAAN	4.9e-62	76.65	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g300200 PE=4 SV=1	[more]

BLAST of Lsi04G010660 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30130.1	4.0e-55	79.70	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	4.4e-46	56.44	LOB domain-containing protein 4	[more]
AT1G07900.1	7.5e-38	64.86	LOB domain-containing protein 1	[more]
AT5G63090.2	2.2e-37	69.90	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G28500.1	3.7e-37	65.14	LOB domain-containing protein 11	[more]

BLAST of Lsi04G010660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109688\|ref\|XP_008454827.1\|	2.2e-84	95.81	PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 12-like [Cucumis m...	[more]
gi\|449460916\|ref\|XP_004148190.1\|	8.5e-84	95.21	PREDICTED: LOB domain-containing protein 12-like [Cucumis sativus]	[more]
gi\|567886568\|ref\|XP_006435806.1\|	1.4e-62	79.17	hypothetical protein CICLE_v10032929mg [Citrus clementina]	[more]
gi\|593801078\|ref\|XP_007163576.1\|	4.1e-62	77.25	hypothetical protein PHAVU_001G245800g [Phaseolus vulgaris]	[more]
gi\|920696395\|gb\|KOM39620.1\|	7.0e-62	76.65	hypothetical protein LR48_Vigan03g300200 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006536	glutamate metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005951	carbamoyl-phosphate synthase complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004088	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G010660.1	Lsi04G010660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 6..103 score: 1.7
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 5..106 score: 26
None	No IPR available	unknown	Coil	Coil	coord: 85..105 scor
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 1..114 score: 2.1
None	No IPR available	PANTHER	PTHR31301:SF4	LOB DOMAIN-CONTAINING PROTEIN 12	coord: 1..114 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G010660	Csa5G215140	Cucumber (Chinese Long) v2	culsiB369
Lsi04G010660	CSPI05G11050	Wild cucumber (PI 183967)	cpilsiB373
Lsi04G010660	Cucsa.144430	Cucumber (Gy14) v1	cgylsiB232
Lsi04G010660	CmaCh04G001340	Cucurbita maxima (Rimu)	cmalsiB671
Lsi04G010660	CmaCh04G011020	Cucurbita maxima (Rimu)	cmalsiB672
Lsi04G010660	CmoCh04G001290	Cucurbita moschata (Rifu)	cmolsiB663
Lsi04G010660	CmoCh04G011660	Cucurbita moschata (Rifu)	cmolsiB662
Lsi04G010660	Cla007240	Watermelon (97103) v1	lsiwmB306
Lsi04G010660	MELO3C018380	Melon (DHL92) v3.5.1	lsimeB285
Lsi04G010660	ClCG07G004530	Watermelon (Charleston Gray)	lsiwcgB297
Lsi04G010660	MELO3C018380.2	Melon (DHL92) v3.6.1	lsimedB299
Lsi04G010660	Cla97C07G133000	Watermelon (97103) v2	lsiwmbB298
Lsi04G010660	Bhi07G000470	Wax gourd	lsiwgoB381
Lsi04G010660	Cp4.1LG01g05470	Cucurbita pepo (Zucchini)	cpelsiB355
Lsi04G010660	Cp4.1LG01g11400	Cucurbita pepo (Zucchini)	cpelsiB354
Lsi04G010660	CsGy5G008370	Cucumber (Gy14) v2	cgyblsiB338
Lsi04G010660	Carg18389	Silver-seed gourd	carlsiB081
Lsi04G010660	Carg00202	Silver-seed gourd	carlsiB605
Lsi04G010660	CsaV3_5G010470	Cucumber (Chinese Long) v3	cuclsiB394

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None