Cucsa.144430 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.144430
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	LOB domain-containing protein, putative
Location	scaffold01080 : 862117 .. 862787 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGGAATTCGCCCTGTGCATCGTGCAAACTCCTCCGGCGACGGTGTGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCTGATGACCCCCACAAGTTTGCTATTGTCCATAAAGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGTACTTCTTCCTTCCTTCCTTACTTCCTTCCTTCTTCTGTTGTTTCGGGTCGTATTTTCAAAAACAGAAAACAAAGTAAAAAAATTTCTTCTTGATTTATAATAATAATAAAAGAAAAAAATGATTGATATAAACAGGAGCTGCCAGTTCAGCAAAGAGGCGACGCGGTGATGAGTTTAGTTTATGAAGCAAGTGCAAGAGTAAGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTTTCACAATTACAAATGCAATTGGCTGTTGCTCAAGCTGAGATTCTTTGTATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGACGATAAACCCTCATCTCTTCTACTCCCCCCGCCTTCTCCTCCCCCCTCTCAGTGCCTCAATTTTGCTGCTTCCTCTCCTAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAATTTATTCATATCATCATCATCTTCCTCATA

mRNA sequence

ATGGGTGGGAATTCGCCCTGTGCATCGTGCAAACTCCTCCGGCGACGGTGTGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCTGATGACCCCCACAAGTTTGCTATTGTCCATAAAGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAGCTGCCAGTTCAGCAAAGAGGCGACGCGGTGATGAGTTTAGTTTATGAAGCAAGTGCAAGAGTAAGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTTTCACAATTACAAATGCAATTGGCTGTTGCTCAAGCTGAGATTCTTTGTATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGACGATAAACCCTCATCTCTTCTACTCCCCCCGCCTTCTCCTCCCCCCTCTCAGTGCCTCAATTTTGCTGCTTCCTCTCCTAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAATTTATTCATATCATCATCATCTTCCTCATA

Coding sequence (CDS)

ATGGGTGGGAATTCGCCCTGTGCATCGTGCAAACTCCTCCGGCGACGGTGTGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCTGATGACCCCCACAAGTTTGCTATTGTCCATAAAGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAGCTGCCAGTTCAGCAAAGAGGCGACGCGGTGATGAGTTTAGTTTATGAAGCAAGTGCAAGAGTAAGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTTTCACAATTACAAATGCAATTGGCTGTTGCTCAAGCTGAGATTCTTTGTATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGACGATAAACCCTCATCTCTTCTACTCCCCCCGCCTTCTCCTCCCCCCTCTCAGTGCCTCAATTTTGCTGCTTCCTCTCCTAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA

Protein sequence

MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS*

Homology

[Close]

BLAST of Cucsa.144430 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 213.8 bits (543), Expect = 1.5e-54
Identity = 107/133 (80.45%), Postives = 115/133 (86.47%), Query Frame = 1


Query: 3   GNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDA 62
           G+SPCASCKLLRRRCAKDCIFAPYFP DDPHKFAIVHKVFGASNVSKMLQELPV QR DA
Sbjct: 5   GSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADA 64

Query: 63  VMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCP 122
           V SLV+EA+ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ +  +  +  
Sbjct: 65  VNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQ 124

Query: 123 QIHSDDKPSSLLL 136
            +  D    +LLL
Sbjct: 125 VLELDQDHKALLL 137

[Close]

BLAST of Cucsa.144430 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.4e-44
Identity = 89/141 (63.12%), Postives = 111/141 (78.72%), Query Frame = 1


Query: 2   GGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGD 61
           G  SPCA+CKLLRRRCA+DC+F+PYFP+D+P KFA VH+VFGASNV+KMLQELP+ QRGD
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 62  AVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQD-----HP 121
           AV S+VYEA+ARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++++Q      H 
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHG 128

Query: 122 VFPNCPQIHSDDKPSSLLLPP 138
           + P+ P   S   PSS  + P
Sbjct: 129 LCPDSPS--SSGSPSSKQVSP 147

[Close]

BLAST of Cucsa.144430 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.6e-37
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 1


Query: 5   SPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVM 64
           SPCA+CK+LRRRCA+ C+ APYFP  DP KF I H+VFGASN+ K LQELP  QR DAV 
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 65  SLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDH 116
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA AQ E++ +Q Q+ +
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSN 142

[Close]

BLAST of Cucsa.144430 vs. Swiss-Prot
Match: LBD13_ARATH (LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2)

HSP 1 Score: 154.8 bits (390), Expect = 8.1e-37
Identity = 79/149 (53.02%), Postives = 99/149 (66.44%), Query Frame = 1


Query: 5   SPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVM 64
           +PCA+CKLLRRRCA++C F+PYF   +PHKFA VHKVFGASNVSKML E+   QRGDA  
Sbjct: 51  TPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAAN 110

Query: 65  SLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQI 124
           SLVYEA+ R+RDP+YGC+GAIS LQ+ +  LQ +L   + EIL  + Q+   +       
Sbjct: 111 SLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTITSLQNNF 170

Query: 125 HSDDKPSS-----------LLLPPPSPPP 143
           +S    SS           +LLPPP PPP
Sbjct: 171 NSTTTTSSVSCDQHALASAILLPPPPPPP 199

[Close]

BLAST of Cucsa.144430 vs. Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2)

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-36
Identity = 72/109 (66.06%), Postives = 86/109 (78.90%), Query Frame = 1


Query: 5   SPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVM 64
           SPCA+CK+LRRRCA  C+ APYFP  DP KF I H+VFGASN+ K LQELP  QR DAV 
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 65  SLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ 114
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA  Q E++ +Q+Q+
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQR 162

[Close]

BLAST of Cucsa.144430 vs. TrEMBL
Match: A0A0A0KP74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G215140 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 1.2e-92
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS 168
           CPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS
Sbjct: 121 CPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS 167

[Close]

BLAST of Cucsa.144430 vs. TrEMBL
Match: V4TH27_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032929mg PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.6e-63
Identity = 135/172 (78.49%), Postives = 145/172 (84.30%), Query Frame = 1


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFP DDPHKFAIVHKVFGASNVSKMLQELPV QR 
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAV SLVYEA+ARVRDPVYGCVGAIS+LQNQVSQLQMQLAVA+AEILCIQMQQ+ P+ P 
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQE-PMMPT 120

Query: 121 CPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYD-----TIFGHDIVS 168
            PQI  DDK  S LL   +  P Q LNF +SS NVI+D     +IFGHD+VS
Sbjct: 121 -PQIDPDDK--SFLL--QNNLPHQYLNFTSSSNNVIHDSLKRESIFGHDMVS 166

[Close]

BLAST of Cucsa.144430 vs. TrEMBL
Match: A0A067FN82_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036782mg PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.6e-63
Identity = 135/172 (78.49%), Postives = 145/172 (84.30%), Query Frame = 1


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFP DDPHKFAIVHKVFGASNVSKMLQELPV QR 
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAV SLVYEA+ARVRDPVYGCVGAIS+LQNQVSQLQMQLAVA+AEILCIQMQQ+ P+ P 
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQE-PMMPT 120

Query: 121 CPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYD-----TIFGHDIVS 168
            PQI  DDK  S LL   +  P Q LNF +SS NVI+D     +IFGHD+VS
Sbjct: 121 -PQIDPDDK--SFLL--QNNLPHQYLNFTSSSNNVIHDSLKRESIFGHDMVS 166

[Close]

BLAST of Cucsa.144430 vs. TrEMBL
Match: A0A061FT06_THECC (Lateral organ boundaries domain family protein OS=Theobroma cacao GN=TCM_042447 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 7.8e-63
Identity = 136/172 (79.07%), Postives = 142/172 (82.56%), Query Frame = 1


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQR 
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRA 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAV SLVYEA+ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ+ P+ P 
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQE-PMAPT 120

Query: 121 CPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYD-----TIFGHDIVS 168
            PQ+  DDK   L      P   Q LNFA SS NVI D     +IFG D+VS
Sbjct: 121 -PQLEQDDKSFLLHNNVVLPHHHQYLNFANSSSNVIQDSLKRESIFG-DMVS 169

[Close]

BLAST of Cucsa.144430 vs. TrEMBL
Match: B9S461_RICCO (LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0687290 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.6e-60
Identity = 132/175 (75.43%), Postives = 140/175 (80.00%), Query Frame = 1


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELP+ QR 
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPIHQRA 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAV SLVYEA+ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ +  V   
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPAVVMP 120

Query: 121 CPQIH---SDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYD-----TIFGHDIVS 168
            PQI     DD  S L      P   Q LNFA+SS +VI+D     +IFG DI+S
Sbjct: 121 TPQIEHNDDDDAKSFLYQQNTLPHHHQYLNFASSS-SVIHDSLKRESIFG-DIIS 173

[Close]

BLAST of Cucsa.144430 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 213.8 bits (543), Expect = 8.3e-56
Identity = 107/133 (80.45%), Postives = 115/133 (86.47%), Query Frame = 1


Query: 3   GNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDA 62
           G+SPCASCKLLRRRCAKDCIFAPYFP DDPHKFAIVHKVFGASNVSKMLQELPV QR DA
Sbjct: 5   GSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADA 64

Query: 63  VMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCP 122
           V SLV+EA+ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ +  +  +  
Sbjct: 65  VNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQ 124

Query: 123 QIHSDDKPSSLLL 136
            +  D    +LLL
Sbjct: 125 VLELDQDHKALLL 137

[Close]

BLAST of Cucsa.144430 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 180.6 bits (457), Expect = 7.8e-46
Identity = 89/141 (63.12%), Postives = 111/141 (78.72%), Query Frame = 1


Query: 2   GGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGD 61
           G  SPCA+CKLLRRRCA+DC+F+PYFP+D+P KFA VH+VFGASNV+KMLQELP+ QRGD
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 62  AVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQD-----HP 121
           AV S+VYEA+ARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++++Q      H 
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHG 128

Query: 122 VFPNCPQIHSDDKPSSLLLPP 138
           + P+ P   S   PSS  + P
Sbjct: 129 LCPDSPS--SSGSPSSKQVSP 147

[Close]

BLAST of Cucsa.144430 vs. TAIR10
Match: AT1G07900.1 (AT1G07900.1 LOB domain-containing protein 1)

HSP 1 Score: 156.0 bits (393), Expect = 2.1e-38
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 1


Query: 5   SPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVM 64
           SPCA+CK+LRRRCA+ C+ APYFP  DP KF I H+VFGASN+ K LQELP  QR DAV 
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 65  SLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDH 116
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA AQ E++ +Q Q+ +
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSN 142

[Close]

BLAST of Cucsa.144430 vs. TAIR10
Match: AT2G30340.1 (AT2G30340.1 LOB domain-containing protein 13)

HSP 1 Score: 154.8 bits (390), Expect = 4.6e-38
Identity = 79/149 (53.02%), Postives = 99/149 (66.44%), Query Frame = 1


Query: 5   SPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVM 64
           +PCA+CKLLRRRCA++C F+PYF   +PHKFA VHKVFGASNVSKML E+   QRGDA  
Sbjct: 51  TPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAAN 110

Query: 65  SLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQI 124
           SLVYEA+ R+RDP+YGC+GAIS LQ+ +  LQ +L   + EIL  + Q+   +       
Sbjct: 111 SLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTITSLQNNF 170

Query: 125 HSDDKPSS-----------LLLPPPSPPP 143
           +S    SS           +LLPPP PPP
Sbjct: 171 NSTTTTSSVSCDQHALASAILLPPPPPPP 199

[Close]

BLAST of Cucsa.144430 vs. TAIR10
Match: AT2G28500.1 (AT2G28500.1 LOB domain-containing protein 11)

HSP 1 Score: 154.1 bits (388), Expect = 7.8e-38
Identity = 72/109 (66.06%), Postives = 86/109 (78.90%), Query Frame = 1


Query: 5   SPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVM 64
           SPCA+CK+LRRRCA  C+ APYFP  DP KF I H+VFGASN+ K LQELP  QR DAV 
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 65  SLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ 114
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA  Q E++ +Q+Q+
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQR 162

[Close]

BLAST of Cucsa.144430 vs. NCBI nr
Match: gi|449460916|ref|XP_004148190.1| (PREDICTED: LOB domain-containing protein 12-like [Cucumis sativus])

HSP 1 Score: 347.1 bits (889), Expect = 1.8e-92
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS 168
           CPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS
Sbjct: 121 CPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS 167

[Close]

BLAST of Cucsa.144430 vs. NCBI nr
Match: gi|659109688|ref|XP_008454827.1| (PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 12-like [Cucumis melo])

HSP 1 Score: 337.0 bits (863), Expect = 1.8e-89
Identity = 164/167 (98.20%), Postives = 164/167 (98.20%), Query Frame = 1


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS 168
           CPQIHSDDK SSLLLPPPS P SQCLNFAASSPNVIYDTIFGHDIVS
Sbjct: 121 CPQIHSDDKSSSLLLPPPSLPXSQCLNFAASSPNVIYDTIFGHDIVS 167

[Close]

BLAST of Cucsa.144430 vs. NCBI nr
Match: gi|567886568|ref|XP_006435806.1| (hypothetical protein CICLE_v10032929mg [Citrus clementina])

HSP 1 Score: 250.4 bits (638), Expect = 2.3e-63
Identity = 135/172 (78.49%), Postives = 145/172 (84.30%), Query Frame = 1


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFP DDPHKFAIVHKVFGASNVSKMLQELPV QR 
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAV SLVYEA+ARVRDPVYGCVGAIS+LQNQVSQLQMQLAVA+AEILCIQMQQ+ P+ P 
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQE-PMMPT 120

Query: 121 CPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYD-----TIFGHDIVS 168
            PQI  DDK  S LL   +  P Q LNF +SS NVI+D     +IFGHD+VS
Sbjct: 121 -PQIDPDDK--SFLL--QNNLPHQYLNFTSSSNNVIHDSLKRESIFGHDMVS 166

[Close]

BLAST of Cucsa.144430 vs. NCBI nr
Match: gi|590561669|ref|XP_007008874.1| (Lateral organ boundaries domain family protein [Theobroma cacao])

HSP 1 Score: 248.1 bits (632), Expect = 1.1e-62
Identity = 136/172 (79.07%), Postives = 142/172 (82.56%), Query Frame = 1


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQR 
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRA 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAV SLVYEA+ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ+ P+ P 
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQE-PMAPT 120

Query: 121 CPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYD-----TIFGHDIVS 168
            PQ+  DDK   L      P   Q LNFA SS NVI D     +IFG D+VS
Sbjct: 121 -PQLEQDDKSFLLHNNVVLPHHHQYLNFANSSSNVIQDSLKRESIFG-DMVS 169

[Close]

BLAST of Cucsa.144430 vs. NCBI nr
Match: gi|1009121432|ref|XP_015877452.1| (PREDICTED: LOB domain-containing protein 12-like [Ziziphus jujuba])

HSP 1 Score: 244.6 bits (623), Expect = 1.2e-61
Identity = 132/184 (71.74%), Postives = 144/184 (78.26%), Query Frame = 1


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPV QR 
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQD-HPVFP 120
           DAV S+VYEA+AR+RDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ+ + +  
Sbjct: 61  DAVSSIVYEANARMRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQEPNNIVV 120

Query: 121 NCPQIHSD-----------DKPSSLLLPPPSPPPSQCLNFAASSPNVIYD-----TIFGH 168
             PQI  D           D+  S  L      P Q LNFA+SS NVI+D     +IFG+
Sbjct: 121 QNPQIEQDPPDHHHHNDIIDEEKSYHLQNNVNLPHQYLNFASSSSNVIHDSLKRESIFGY 180

The following BLAST results are available for this feature:

BLAST of Cucsa.144430 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD12_ARATH	1.5e-54	80.45	LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2	[more]
LBD4_ARATH	1.4e-44	63.12	LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1	[more]
LBD1_ARATH	3.6e-37	65.77	LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1	[more]
LBD13_ARATH	8.1e-37	53.02	LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2	[more]
LBD11_ARATH	1.4e-36	66.06	LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2	[more]

BLAST of Cucsa.144430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KP74_CUCSA	1.2e-92	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G215140 PE=4 SV=1	[more]
V4TH27_9ROSI	1.6e-63	78.49	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032929mg PE=4 SV=1	[more]
A0A067FN82_CITSI	1.6e-63	78.49	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036782mg PE=4 SV=1	[more]
A0A061FT06_THECC	7.8e-63	79.07	Lateral organ boundaries domain family protein OS=Theobroma cacao GN=TCM_042447 ...	[more]
B9S461_RICCO	1.6e-60	75.43	LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0687290 PE=4...	[more]

BLAST of Cucsa.144430 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30130.1	8.3e-56	80.45	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	7.8e-46	63.12	LOB domain-containing protein 4	[more]
AT1G07900.1	2.1e-38	65.77	LOB domain-containing protein 1	[more]
AT2G30340.1	4.6e-38	53.02	LOB domain-containing protein 13	[more]
AT2G28500.1	7.8e-38	66.06	LOB domain-containing protein 11	[more]

BLAST of Cucsa.144430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460916\|ref\|XP_004148190.1\|	1.8e-92	100.00	PREDICTED: LOB domain-containing protein 12-like [Cucumis sativus]	[more]
gi\|659109688\|ref\|XP_008454827.1\|	1.8e-89	98.20	PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 12-like [Cucumis m...	[more]
gi\|567886568\|ref\|XP_006435806.1\|	2.3e-63	78.49	hypothetical protein CICLE_v10032929mg [Citrus clementina]	[more]
gi\|590561669\|ref\|XP_007008874.1\|	1.1e-62	79.07	Lateral organ boundaries domain family protein [Theobroma cacao]	[more]
gi\|1009121432\|ref\|XP_015877452.1\|	1.2e-61	71.74	PREDICTED: LOB domain-containing protein 12-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006536	glutamate metabolic process
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005951	carbamoyl-phosphate synthase complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004088	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.144430.1	Cucsa.144430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 6..103 score: 1.5
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 5..106 score: 26
None	No IPR available	unknown	Coil	Coil	coord: 85..105 scor
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 1..114 score: 4.0E
None	No IPR available	PANTHER	PTHR31301:SF4	LOB DOMAIN-CONTAINING PROTEIN 12	coord: 1..114 score: 4.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.144430	Cla007240	Watermelon (97103) v1	cgywmB253
Cucsa.144430	Csa5G215140	Cucumber (Chinese Long) v2	cgycuB209
Cucsa.144430	MELO3C018380	Melon (DHL92) v3.5.1	cgymeB242
Cucsa.144430	ClCG07G004530	Watermelon (Charleston Gray)	cgywcgB244
Cucsa.144430	CSPI05G11050	Wild cucumber (PI 183967)	cgycpiB212
Cucsa.144430	CmaCh04G011020	Cucurbita maxima (Rimu)	cgycmaB0400
Cucsa.144430	CmaCh04G001340	Cucurbita maxima (Rimu)	cgycmaB0401
Cucsa.144430	CmoCh04G001290	Cucurbita moschata (Rifu)	cgycmoB0401
Cucsa.144430	CmoCh04G011660	Cucurbita moschata (Rifu)	cgycmoB0400
Cucsa.144430	Lsi04G010660	Bottle gourd (USVL1VR-Ls)	cgylsiB232
Cucsa.144430	Cp4.1LG01g05470	Cucurbita pepo (Zucchini)	cgycpeB0388
Cucsa.144430	Cp4.1LG01g11400	Cucurbita pepo (Zucchini)	cgycpeB0387
Cucsa.144430	MELO3C018380.2	Melon (DHL92) v3.6.1	cgymedB237
Cucsa.144430	CsaV3_5G010470	Cucumber (Chinese Long) v3	cgycucB217
Cucsa.144430	Cla97C07G133000	Watermelon (97103) v2	cgywmbB244
Cucsa.144430	Bhi07G000470	Wax gourd	cgywgoB283
Cucsa.144430	Carg00202	Silver-seed gourd	carcgyB0745

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None