CmoCh04G001290 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G001290
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	LOB domain protein 12
Location	Cmo_Chr04 : 659700 .. 660200 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGCGGTTCGCCCTGCGCGTCGTGCAAACTCCTCCGGCGACGGTGCGCAAAAGAGTGCATTTTTGCCCCTTACTTCCCCTCCGATGACCCCCACAAATTTGCTATTGTTCATAAGGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCGGTGCAACAGAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAACTGCAAGAGTGCGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAACCAAGTTTCTCAGCTACAAATGCAATTAGCTGTTGCTCAATCTGAGATACTTTGCTTCCAAATGCAACAAGACCACCTTGTTTTCCCAAATTGCCCTCAGATCTACTCCGACGAGAAACCGCCGTCTCTTCTACTCCCGCCGCCGTCTCCTCCGCGGTCTCAGTGCTTCAACTTTGCTTCCTCTCCGAATATAATCTACGACGCCATTTTTGGACATGACATTGTTTCTTAA

mRNA sequence

ATGGGTGGCGGTTCGCCCTGCGCGTCGTGCAAACTCCTCCGGCGACGGTGCGCAAAAGAGTGCATTTTTGCCCCTTACTTCCCCTCCGATGACCCCCACAAATTTGCTATTGTTCATAAGGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCGGTGCAACAGAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAACTGCAAGAGTGCGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAACCAAGTTTCTCAGCTACAAATGCAATTAGCTGTTGCTCAATCTGAGATACTTTGCTTCCAAATGCAACAAGACCACCTTGTTTTCCCAAATTGCCCTCAGATCTACTCCGACGAGAAACCGCCGTCTCTTCTACTCCCGCCGCCGTCTCCTCCGCGGTCTCAGTGCTTCAACTTTGCTTCCTCTCCGAATATAATCTACGACGCCATTTTTGGACATGACATTGTTTCTTAA

Coding sequence (CDS)

ATGGGTGGCGGTTCGCCCTGCGCGTCGTGCAAACTCCTCCGGCGACGGTGCGCAAAAGAGTGCATTTTTGCCCCTTACTTCCCCTCCGATGACCCCCACAAATTTGCTATTGTTCATAAGGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCGGTGCAACAGAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAACTGCAAGAGTGCGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAACCAAGTTTCTCAGCTACAAATGCAATTAGCTGTTGCTCAATCTGAGATACTTTGCTTCCAAATGCAACAAGACCACCTTGTTTTCCCAAATTGCCCTCAGATCTACTCCGACGAGAAACCGCCGTCTCTTCTACTCCCGCCGCCGTCTCCTCCGCGGTCTCAGTGCTTCAACTTTGCTTCCTCTCCGAATATAATCTACGACGCCATTTTTGGACATGACATTGTTTCTTAA

Homology

[Close]

BLAST of CmoCh04G001290 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 206.8 bits (525), Expect = 1.8e-52
Identity = 104/133 (78.20%), Postives = 113/133 (84.96%), Query Frame = 1


Query: 3   GGSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDA 62
           G SPCASCKLLRRRCAK+CIFAPYFP DDPHKFAIVHKVFGASNVSKMLQELPV QR DA
Sbjct: 5   GSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADA 64

Query: 63  VMSLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLVFPNCP 122
           V SLV+EA ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQ+EILC QMQ +  +  +  
Sbjct: 65  VNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQ 124

Query: 123 QIYSDEKPPSLLL 136
            +  D+   +LLL
Sbjct: 125 VLELDQDHKALLL 137

[Close]

BLAST of CmoCh04G001290 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.7e-42
Identity = 86/134 (64.18%), Postives = 105/134 (78.36%), Query Frame = 1


Query: 2   GGGSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGD 61
           G  SPCA+CKLLRRRCA++C+F+PYFP+D+P KFA VH+VFGASNV+KMLQELP+ QRGD
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 62  AVMSLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLVFPN- 121
           AV S+VYEA ARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQ+E++  +++Q    FP  
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS-TNFPGH 128

Query: 122 --CPQIYSDEKPPS 133
             CP   S    PS
Sbjct: 129 GLCPDSPSSSGSPS 141

[Close]

BLAST of CmoCh04G001290 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.6e-37
Identity = 74/113 (65.49%), Postives = 89/113 (78.76%), Query Frame = 1


Query: 5   SPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVM 64
           SPCA+CK+LRRRCA+ C+ APYFP  DP KF I H+VFGASN+ K LQELP  QR DAV 
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 65  SLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLV 118
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA AQ E++  Q Q+ +L+
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLL 144

[Close]

BLAST of CmoCh04G001290 vs. Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 155.2 bits (391), Expect = 6.1e-37
Identity = 80/141 (56.74%), Postives = 101/141 (71.63%), Query Frame = 1


Query: 5   SPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVM 64
           +PCA+CKLLRRRCA+EC F+PYF   +PHKFA VHKVFGASNVSKML E+P  QR DA  
Sbjct: 44  TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAAN 103

Query: 65  SLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQ--DHLVFPNCP 124
           SLVYEA  R+RDPVYGC+GAIS LQ QV  LQ +L   +SEIL ++ ++    L+ P+  
Sbjct: 104 SLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPSNS 163

Query: 125 QI--YSDEKPPSLLLPPPSPP 142
           Q+  + +    S++ PPP  P
Sbjct: 164 QVAGFHNSGGVSVIAPPPQRP 184

[Close]

BLAST of CmoCh04G001290 vs. Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2)

HSP 1 Score: 153.3 bits (386), Expect = 2.3e-36
Identity = 73/113 (64.60%), Postives = 88/113 (77.88%), Query Frame = 1


Query: 5   SPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVM 64
           SPCA+CK+LRRRCA +C+ APYFP  DP KF I H+VFGASN+ K LQELP  QR DAV 
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 65  SLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLV 118
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA  Q E++  Q+Q+  L+
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLL 166

[Close]

BLAST of CmoCh04G001290 vs. TrEMBL
Match: A0A0A0KP74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G215140 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 1.5e-82
Identity = 153/167 (91.62%), Postives = 159/167 (95.21%), Query Frame = 1


Query: 1   MGGGSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGG SPCASCKLLRRRCAK+CIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLVFPN 120
           DAVMSLVYEA+ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQ+EILC QMQQDH VFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIYSDEKPPSLLLPPPSPPRSQCFNF-ASSPNIIYDAIFGHDIVS 167
           CPQI+SD+KP SLLLPPPSPP SQC NF ASSPN+IYD IFGHDIVS
Sbjct: 121 CPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS 167

[Close]

BLAST of CmoCh04G001290 vs. TrEMBL
Match: A0A067LK93_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01209 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 9.8e-58
Identity = 128/171 (74.85%), Postives = 137/171 (80.12%), Query Frame = 1


Query: 1   MGGGSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGG SPCASCKLLRRRCAK+CIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPV QR 
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60

Query: 61  DAVMSLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLVFPN 120
           DAV SLVYEA ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQ+EILC QMQ + ++   
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPVI--P 120

Query: 121 CPQIYSDEKPPSLLLPPPSPPRSQCFNFASSPNIIYD-----AIFGHDIVS 167
            PQI   E   S LL    P   Q FNFASS N+I+D     +IFG DI+S
Sbjct: 121 TPQI-EPEDDKSFLLQNNLP---QYFNFASSSNVIHDSLKRESIFG-DIIS 164

[Close]

BLAST of CmoCh04G001290 vs. TrEMBL
Match: V4TH27_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032929mg PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-57
Identity = 126/172 (73.26%), Postives = 139/172 (80.81%), Query Frame = 1


Query: 1   MGGGSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGG SPCASCKLLRRRCAK+CIFAPYFP DDPHKFAIVHKVFGASNVSKMLQELPV QR 
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60

Query: 61  DAVMSLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLVFPN 120
           DAV SLVYEA ARVRDPVYGCVGAIS+LQNQVSQLQMQLAVA++EILC QMQQ+ ++   
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMM--P 120

Query: 121 CPQIYSDEKPPSLLLPPPSPPRSQCFNF-ASSPNIIYD-----AIFGHDIVS 167
            PQI  D+K  S LL    P   Q  NF +SS N+I+D     +IFGHD+VS
Sbjct: 121 TPQIDPDDK--SFLLQNNLP--HQYLNFTSSSNNVIHDSLKRESIFGHDMVS 166

[Close]

BLAST of CmoCh04G001290 vs. TrEMBL
Match: A0A067FN82_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036782mg PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-57
Identity = 126/172 (73.26%), Postives = 139/172 (80.81%), Query Frame = 1


Query: 1   MGGGSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGG SPCASCKLLRRRCAK+CIFAPYFP DDPHKFAIVHKVFGASNVSKMLQELPV QR 
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60

Query: 61  DAVMSLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLVFPN 120
           DAV SLVYEA ARVRDPVYGCVGAIS+LQNQVSQLQMQLAVA++EILC QMQQ+ ++   
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMM--P 120

Query: 121 CPQIYSDEKPPSLLLPPPSPPRSQCFNF-ASSPNIIYD-----AIFGHDIVS 167
            PQI  D+K  S LL    P   Q  NF +SS N+I+D     +IFGHD+VS
Sbjct: 121 TPQIDPDDK--SFLLQNNLP--HQYLNFTSSSNNVIHDSLKRESIFGHDMVS 166

[Close]

BLAST of CmoCh04G001290 vs. TrEMBL
Match: V7D211_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G245800g PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.7e-57
Identity = 124/171 (72.51%), Postives = 135/171 (78.95%), Query Frame = 1


Query: 1   MGGGSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           M G SPCASCKLLRRRC K+CIFAPYFPS+DP KFA+VHKVFGASNVSKMLQELP+QQR 
Sbjct: 17  MAGNSPCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPIQQRA 76

Query: 61  DAVMSLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLVFPN 120
           DAV SLVYEA ARVRDPVYGCVGAISYLQNQVS+LQMQLAVAQ+EILC QMQQ+  V PN
Sbjct: 77  DAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQEP-VMPN 136

Query: 121 CPQIYSDEKPPSLLLPPPSPPRSQCFNFASSPNIIYDA-----IFGHDIVS 167
                 D K  S LL    P   Q  N+ASS N+IYDA     I+GHD+VS
Sbjct: 137 PEMENPDHK--SYLLHNELP---QFLNYASSSNVIYDAVTRESIYGHDLVS 181

[Close]

BLAST of CmoCh04G001290 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 206.8 bits (525), Expect = 1.0e-53
Identity = 104/133 (78.20%), Postives = 113/133 (84.96%), Query Frame = 1


Query: 3   GGSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDA 62
           G SPCASCKLLRRRCAK+CIFAPYFP DDPHKFAIVHKVFGASNVSKMLQELPV QR DA
Sbjct: 5   GSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADA 64

Query: 63  VMSLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLVFPNCP 122
           V SLV+EA ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQ+EILC QMQ +  +  +  
Sbjct: 65  VNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQ 124

Query: 123 QIYSDEKPPSLLL 136
            +  D+   +LLL
Sbjct: 125 VLELDQDHKALLL 137

[Close]

BLAST of CmoCh04G001290 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 173.7 bits (439), Expect = 9.4e-44
Identity = 86/134 (64.18%), Postives = 105/134 (78.36%), Query Frame = 1


Query: 2   GGGSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGD 61
           G  SPCA+CKLLRRRCA++C+F+PYFP+D+P KFA VH+VFGASNV+KMLQELP+ QRGD
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 62  AVMSLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLVFPN- 121
           AV S+VYEA ARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQ+E++  +++Q    FP  
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS-TNFPGH 128

Query: 122 --CPQIYSDEKPPS 133
             CP   S    PS
Sbjct: 129 GLCPDSPSSSGSPS 141

[Close]

BLAST of CmoCh04G001290 vs. TAIR10
Match: AT1G07900.1 (AT1G07900.1 LOB domain-containing protein 1)

HSP 1 Score: 156.0 bits (393), Expect = 2.0e-38
Identity = 74/113 (65.49%), Postives = 89/113 (78.76%), Query Frame = 1


Query: 5   SPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVM 64
           SPCA+CK+LRRRCA+ C+ APYFP  DP KF I H+VFGASN+ K LQELP  QR DAV 
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 65  SLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLV 118
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA AQ E++  Q Q+ +L+
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLL 144

[Close]

BLAST of CmoCh04G001290 vs. TAIR10
Match: AT2G40470.1 (AT2G40470.1 LOB domain-containing protein 15)

HSP 1 Score: 155.2 bits (391), Expect = 3.5e-38
Identity = 80/141 (56.74%), Postives = 101/141 (71.63%), Query Frame = 1


Query: 5   SPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVM 64
           +PCA+CKLLRRRCA+EC F+PYF   +PHKFA VHKVFGASNVSKML E+P  QR DA  
Sbjct: 44  TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAAN 103

Query: 65  SLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQ--DHLVFPNCP 124
           SLVYEA  R+RDPVYGC+GAIS LQ QV  LQ +L   +SEIL ++ ++    L+ P+  
Sbjct: 104 SLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPSNS 163

Query: 125 QI--YSDEKPPSLLLPPPSPP 142
           Q+  + +    S++ PPP  P
Sbjct: 164 QVAGFHNSGGVSVIAPPPQRP 184

[Close]

BLAST of CmoCh04G001290 vs. TAIR10
Match: AT2G28500.1 (AT2G28500.1 LOB domain-containing protein 11)

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-37
Identity = 73/113 (64.60%), Postives = 88/113 (77.88%), Query Frame = 1


Query: 5   SPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVM 64
           SPCA+CK+LRRRCA +C+ APYFP  DP KF I H+VFGASN+ K LQELP  QR DAV 
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 65  SLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLV 118
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA  Q E++  Q+Q+  L+
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLL 166

[Close]

BLAST of CmoCh04G001290 vs. NCBI nr
Match: gi|449460916|ref|XP_004148190.1| (PREDICTED: LOB domain-containing protein 12-like [Cucumis sativus])

HSP 1 Score: 313.5 bits (802), Expect = 2.2e-82
Identity = 153/167 (91.62%), Postives = 159/167 (95.21%), Query Frame = 1


Query: 1   MGGGSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGG SPCASCKLLRRRCAK+CIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLVFPN 120
           DAVMSLVYEA+ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQ+EILC QMQQDH VFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIYSDEKPPSLLLPPPSPPRSQCFNF-ASSPNIIYDAIFGHDIVS 167
           CPQI+SD+KP SLLLPPPSPP SQC NF ASSPN+IYD IFGHDIVS
Sbjct: 121 CPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS 167

[Close]

BLAST of CmoCh04G001290 vs. NCBI nr
Match: gi|659109688|ref|XP_008454827.1| (PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 12-like [Cucumis melo])

HSP 1 Score: 307.0 bits (785), Expect = 2.0e-80
Identity = 151/167 (90.42%), Postives = 157/167 (94.01%), Query Frame = 1


Query: 1   MGGGSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGG SPCASCKLLRRRCAK+CIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLVFPN 120
           DAVMSLVYEA+ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQ+EILC QMQQDH VFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIYSDEKPPSLLLPPPSPPRSQCFNF-ASSPNIIYDAIFGHDIVS 167
           CPQI+SD+K  SLLLPPPS P SQC NF ASSPN+IYD IFGHDIVS
Sbjct: 121 CPQIHSDDKSSSLLLPPPSLPXSQCLNFAASSPNVIYDTIFGHDIVS 167

[Close]

BLAST of CmoCh04G001290 vs. NCBI nr
Match: gi|802546754|ref|XP_012086801.1| (PREDICTED: LOB domain-containing protein 12-like [Jatropha curcas])

HSP 1 Score: 231.1 bits (588), Expect = 1.4e-57
Identity = 128/171 (74.85%), Postives = 137/171 (80.12%), Query Frame = 1


Query: 1   MGGGSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGG SPCASCKLLRRRCAK+CIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPV QR 
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60

Query: 61  DAVMSLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLVFPN 120
           DAV SLVYEA ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQ+EILC QMQ + ++   
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPVI--P 120

Query: 121 CPQIYSDEKPPSLLLPPPSPPRSQCFNFASSPNIIYD-----AIFGHDIVS 167
            PQI   E   S LL    P   Q FNFASS N+I+D     +IFG DI+S
Sbjct: 121 TPQI-EPEDDKSFLLQNNLP---QYFNFASSSNVIHDSLKRESIFG-DIIS 164

[Close]

BLAST of CmoCh04G001290 vs. NCBI nr
Match: gi|567886568|ref|XP_006435806.1| (hypothetical protein CICLE_v10032929mg [Citrus clementina])

HSP 1 Score: 229.9 bits (585), Expect = 3.1e-57
Identity = 126/172 (73.26%), Postives = 139/172 (80.81%), Query Frame = 1


Query: 1   MGGGSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGG SPCASCKLLRRRCAK+CIFAPYFP DDPHKFAIVHKVFGASNVSKMLQELPV QR 
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60

Query: 61  DAVMSLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLVFPN 120
           DAV SLVYEA ARVRDPVYGCVGAIS+LQNQVSQLQMQLAVA++EILC QMQQ+ ++   
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMM--P 120

Query: 121 CPQIYSDEKPPSLLLPPPSPPRSQCFNF-ASSPNIIYD-----AIFGHDIVS 167
            PQI  D+K  S LL    P   Q  NF +SS N+I+D     +IFGHD+VS
Sbjct: 121 TPQIDPDDK--SFLLQNNLP--HQYLNFTSSSNNVIHDSLKRESIFGHDMVS 166

[Close]

BLAST of CmoCh04G001290 vs. NCBI nr
Match: gi|255559521|ref|XP_002520780.1| (PREDICTED: LOB domain-containing protein 12 [Ricinus communis])

HSP 1 Score: 229.2 bits (583), Expect = 5.3e-57
Identity = 124/174 (71.26%), Postives = 134/174 (77.01%), Query Frame = 1


Query: 1   MGGGSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGG SPCASCKLLRRRCAK+CIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELP+ QR 
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPIHQRA 60

Query: 61  DAVMSLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLVFPN 120
           DAV SLVYEA ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQ+EILC QMQ +  V   
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPAVVMP 120

Query: 121 CPQIY---SDEKPPSLLLPPPSPPRSQCFNFASSPNIIYD-----AIFGHDIVS 167
            PQI     D+    L      P   Q  NFASS ++I+D     +IFG DI+S
Sbjct: 121 TPQIEHNDDDDAKSFLYQQNTLPHHHQYLNFASSSSVIHDSLKRESIFG-DIIS 173

The following BLAST results are available for this feature:

BLAST of CmoCh04G001290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD12_ARATH	1.8e-52	78.20	LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2	[more]
LBD4_ARATH	1.7e-42	64.18	LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1	[more]
LBD1_ARATH	3.6e-37	65.49	LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1	[more]
LBD15_ARATH	6.1e-37	56.74	LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2	[more]
LBD11_ARATH	2.3e-36	64.60	LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2	[more]

BLAST of CmoCh04G001290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KP74_CUCSA	1.5e-82	91.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G215140 PE=4 SV=1	[more]
A0A067LK93_JATCU	9.8e-58	74.85	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01209 PE=4 SV=1	[more]
V4TH27_9ROSI	2.2e-57	73.26	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032929mg PE=4 SV=1	[more]
A0A067FN82_CITSI	2.2e-57	73.26	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036782mg PE=4 SV=1	[more]
V7D211_PHAVU	3.7e-57	72.51	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G245800g PE=4 SV=1	[more]

BLAST of CmoCh04G001290 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30130.1	1.0e-53	78.20	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	9.4e-44	64.18	LOB domain-containing protein 4	[more]
AT1G07900.1	2.0e-38	65.49	LOB domain-containing protein 1	[more]
AT2G40470.1	3.5e-38	56.74	LOB domain-containing protein 15	[more]
AT2G28500.1	1.3e-37	64.60	LOB domain-containing protein 11	[more]

BLAST of CmoCh04G001290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460916\|ref\|XP_004148190.1\|	2.2e-82	91.62	PREDICTED: LOB domain-containing protein 12-like [Cucumis sativus]	[more]
gi\|659109688\|ref\|XP_008454827.1\|	2.0e-80	90.42	PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 12-like [Cucumis m...	[more]
gi\|802546754\|ref\|XP_012086801.1\|	1.4e-57	74.85	PREDICTED: LOB domain-containing protein 12-like [Jatropha curcas]	[more]
gi\|567886568\|ref\|XP_006435806.1\|	3.1e-57	73.26	hypothetical protein CICLE_v10032929mg [Citrus clementina]	[more]
gi\|255559521\|ref\|XP_002520780.1\|	5.3e-57	71.26	PREDICTED: LOB domain-containing protein 12 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0006536	glutamate metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005951	carbamoyl-phosphate synthase complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0004088	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G001290.1	CmoCh04G001290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 6..103 score: 2.0
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 5..106 score: 26
None	No IPR available	unknown	Coil	Coil	coord: 85..105 scor
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 1..114 score: 6.9
None	No IPR available	PANTHER	PTHR31301:SF4	LOB DOMAIN-CONTAINING PROTEIN 12	coord: 1..114 score: 6.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G001290	Cucsa.144430	Cucumber (Gy14) v1	cgycmoB0401
CmoCh04G001290	CmaCh04G001340	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G001290	CmaCh04G011020	Cucurbita maxima (Rimu)	cmacmoB731
CmoCh04G001290	Cla007240	Watermelon (97103) v1	cmowmB685
CmoCh04G001290	Csa5G215140	Cucumber (Chinese Long) v2	cmocuB737
CmoCh04G001290	MELO3C018380	Melon (DHL92) v3.5.1	cmomeB635
CmoCh04G001290	ClCG07G004530	Watermelon (Charleston Gray)	cmowcgB676
CmoCh04G001290	CSPI05G11050	Wild cucumber (PI 183967)	cmocpiB747
CmoCh04G001290	Lsi04G010660	Bottle gourd (USVL1VR-Ls)	cmolsiB663
CmoCh04G001290	Cp4.1LG01g05470	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G001290	Cp4.1LG01g11400	Cucurbita pepo (Zucchini)	cmocpeB674
CmoCh04G001290	MELO3C018380.2	Melon (DHL92) v3.6.1	cmomedB722
CmoCh04G001290	CsaV3_5G010470	Cucumber (Chinese Long) v3	cmocucB0873
CmoCh04G001290	Cla97C07G133000	Watermelon (97103) v2	cmowmbB755
CmoCh04G001290	Bhi07G000470	Wax gourd	cmowgoB0889
CmoCh04G001290	CsGy5G008370	Cucumber (Gy14) v2	cgybcmoB652
CmoCh04G001290	Carg00202	Silver-seed gourd	carcmoB0924
CmoCh04G001290	Carg18389	Silver-seed gourd	carcmoB0123

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G001290	CmoCh04G011660	Cucurbita moschata (Rifu)	cmocmoB464

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G001290	Wax gourd	cmowgoB0884
CmoCh04G001290	Cucurbita moschata (Rifu)	cmocmoB187
CmoCh04G001290	Cucurbita maxima (Rimu)	cmacmoB239
CmoCh04G001290	Wild cucumber (PI 183967)	cmocpiB692
CmoCh04G001290	Cucumber (Chinese Long) v2	cmocuB678
CmoCh04G001290	Melon (DHL92) v3.5.1	cmomeB661
CmoCh04G001290	Watermelon (Charleston Gray)	cmowcgB649
CmoCh04G001290	Watermelon (97103) v1	cmowmB669
CmoCh04G001290	Cucurbita pepo (Zucchini)	cmocpeB695
CmoCh04G001290	Bottle gourd (USVL1VR-Ls)	cmolsiB639
CmoCh04G001290	Cucumber (Gy14) v2	cgybcmoB125
CmoCh04G001290	Cucumber (Chinese Long) v3	cmocucB0806
CmoCh04G001290	Watermelon (97103) v2	cmowmbB721