Csa5G215140 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTGGGAATTCGCCCTGTGCATCGTGCAAACTCCTCCGGCGACGGTGTGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCTGATGACCCCCACAAGTTTGCTATTGTCCATAAAGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGTACTTCTTCCTTCCTTCCTTCCTTCTTCTGTTGTTTCGGGTCGTATTTTCAAAAACAGAAAACAAAGTAAAAAAATTTCTTCTTGATTTATAATAATAATAAAAGAAAAAAATGATTGATATAAACAGGAGCTGCCAGTTCAGCAAAGAGGCGACGCGGTGATGAGTTTAGTTTATGAAGCAAGTGCAAGAGTAAGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTTTCACAATTACAAATGCAATTGGCTGTTGCTCAAGCTGAGATTCTTTGTATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGACGATAAACCCTCATCTCTTCTACTCCCCCCGCCCTCTCCTCCCCCCTCTCAGTGCCTCAATTTTGCTGCTTCCTCTCCTAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA ATGGGTGGGAATTCGCCCTGTGCATCGTGCAAACTCCTCCGGCGACGGTGTGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCTGATGACCCCCACAAGTTTGCTATTGTCCATAAAGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAGCTGCCAGTTCAGCAAAGAGGCGACGCGGTGATGAGTTTAGTTTATGAAGCAAGTGCAAGAGTAAGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTTTCACAATTACAAATGCAATTGGCTGTTGCTCAAGCTGAGATTCTTTGTATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGACGATAAACCCTCATCTCTTCTACTCCCCCCGCCCTCTCCTCCCCCCTCTCAGTGCCTCAATTTTGCTGCTTCCTCTCCTAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA ATGGGTGGGAATTCGCCCTGTGCATCGTGCAAACTCCTCCGGCGACGGTGTGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCTGATGACCCCCACAAGTTTGCTATTGTCCATAAAGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAGCTGCCAGTTCAGCAAAGAGGCGACGCGGTGATGAGTTTAGTTTATGAAGCAAGTGCAAGAGTAAGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTTTCACAATTACAAATGCAATTGGCTGTTGCTCAAGCTGAGATTCTTTGTATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGACGATAAACCCTCATCTCTTCTACTCCCCCCGCCCTCTCCTCCCCCCTCTCAGTGCCTCAATTTTGCTGCTTCCTCTCCTAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS*
BLAST of Csa5G215140 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2) HSP 1 Score: 213.8 bits (543), Expect = 1.5e-54 Identity = 107/133 (80.45%), Postives = 113/133 (84.96%), Query Frame = 1
BLAST of Csa5G215140 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1) HSP 1 Score: 180.6 bits (457), Expect = 1.4e-44 Identity = 89/141 (63.12%), Postives = 109/141 (77.30%), Query Frame = 1
BLAST of Csa5G215140 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 3.6e-37 Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 1
BLAST of Csa5G215140 vs. Swiss-Prot
Match: LBD13_ARATH (LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2) HSP 1 Score: 154.8 bits (390), Expect = 8.1e-37 Identity = 79/149 (53.02%), Postives = 97/149 (65.10%), Query Frame = 1
BLAST of Csa5G215140 vs. Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2) HSP 1 Score: 154.1 bits (388), Expect = 1.4e-36 Identity = 72/109 (66.06%), Postives = 84/109 (77.06%), Query Frame = 1
BLAST of Csa5G215140 vs. TrEMBL
Match: A0A0A0KP74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G215140 PE=4 SV=1) HSP 1 Score: 347.1 bits (889), Expect = 1.2e-92 Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1
BLAST of Csa5G215140 vs. TrEMBL
Match: V4TH27_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032929mg PE=4 SV=1) HSP 1 Score: 250.4 bits (638), Expect = 1.6e-63 Identity = 135/172 (78.49%), Postives = 145/172 (84.30%), Query Frame = 1
BLAST of Csa5G215140 vs. TrEMBL
Match: A0A067FN82_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036782mg PE=4 SV=1) HSP 1 Score: 250.4 bits (638), Expect = 1.6e-63 Identity = 135/172 (78.49%), Postives = 145/172 (84.30%), Query Frame = 1
BLAST of Csa5G215140 vs. TrEMBL
Match: A0A061FT06_THECC (Lateral organ boundaries domain family protein OS=Theobroma cacao GN=TCM_042447 PE=4 SV=1) HSP 1 Score: 248.1 bits (632), Expect = 7.8e-63 Identity = 136/172 (79.07%), Postives = 142/172 (82.56%), Query Frame = 1
BLAST of Csa5G215140 vs. TrEMBL
Match: B9S461_RICCO (LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0687290 PE=4 SV=1) HSP 1 Score: 240.4 bits (612), Expect = 1.6e-60 Identity = 132/175 (75.43%), Postives = 140/175 (80.00%), Query Frame = 1
BLAST of Csa5G215140 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein) HSP 1 Score: 213.8 bits (543), Expect = 8.3e-56 Identity = 107/133 (80.45%), Postives = 113/133 (84.96%), Query Frame = 1
BLAST of Csa5G215140 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4) HSP 1 Score: 180.6 bits (457), Expect = 7.8e-46 Identity = 89/141 (63.12%), Postives = 109/141 (77.30%), Query Frame = 1
BLAST of Csa5G215140 vs. TAIR10
Match: AT1G07900.1 (AT1G07900.1 LOB domain-containing protein 1) HSP 1 Score: 156.0 bits (393), Expect = 2.1e-38 Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 1
BLAST of Csa5G215140 vs. TAIR10
Match: AT2G30340.1 (AT2G30340.1 LOB domain-containing protein 13) HSP 1 Score: 154.8 bits (390), Expect = 4.6e-38 Identity = 79/149 (53.02%), Postives = 97/149 (65.10%), Query Frame = 1
BLAST of Csa5G215140 vs. TAIR10
Match: AT2G28500.1 (AT2G28500.1 LOB domain-containing protein 11) HSP 1 Score: 154.1 bits (388), Expect = 7.8e-38 Identity = 72/109 (66.06%), Postives = 84/109 (77.06%), Query Frame = 1
BLAST of Csa5G215140 vs. NCBI nr
Match: gi|449460916|ref|XP_004148190.1| (PREDICTED: LOB domain-containing protein 12-like [Cucumis sativus]) HSP 1 Score: 347.1 bits (889), Expect = 1.8e-92 Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1
BLAST of Csa5G215140 vs. NCBI nr
Match: gi|659109688|ref|XP_008454827.1| (PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 12-like [Cucumis melo]) HSP 1 Score: 337.0 bits (863), Expect = 1.8e-89 Identity = 164/167 (98.20%), Postives = 164/167 (98.20%), Query Frame = 1
BLAST of Csa5G215140 vs. NCBI nr
Match: gi|567886568|ref|XP_006435806.1| (hypothetical protein CICLE_v10032929mg [Citrus clementina]) HSP 1 Score: 250.4 bits (638), Expect = 2.3e-63 Identity = 135/172 (78.49%), Postives = 145/172 (84.30%), Query Frame = 1
BLAST of Csa5G215140 vs. NCBI nr
Match: gi|590561669|ref|XP_007008874.1| (Lateral organ boundaries domain family protein [Theobroma cacao]) HSP 1 Score: 248.1 bits (632), Expect = 1.1e-62 Identity = 136/172 (79.07%), Postives = 142/172 (82.56%), Query Frame = 1
BLAST of Csa5G215140 vs. NCBI nr
Match: gi|1009121432|ref|XP_015877452.1| (PREDICTED: LOB domain-containing protein 12-like [Ziziphus jujuba]) HSP 1 Score: 244.6 bits (623), Expect = 1.2e-61 Identity = 132/184 (71.74%), Postives = 144/184 (78.26%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: None |