Lsi04G010460 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi04G010460
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_78
Locationchr04 : 12333923 .. 12334312 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAATCGCTTCCATCGCCAACTCGCCTTCAGCAATTCGCCAAGGTCATCGTCTCCTCCAAGAAGCCCCAATCCGCCGCACCTAACCCCAAGTCTCGGATCCGAGTTTCGCCGCCCGAAACTCCGATCTCCGGTACCGTCCGAGTCATCTCGGAGCTGAAGAAGAAGAAGAAAAACATGGAGGAGGAGAAGGAGGAGAAGAATCGGACTCCGTTGGCCGATGTGGTCTCGGACTGCGTCAAGCGGTGGTTTCAGGACACGCTCAAGGAGGCCAGCACCGGCGATACGTCGATGCAGGTCTTGGTAGGCCAGATGTTTTGCTCCGGCTACGGCGTTCCTAAGGACACTCAGAAGGTTTGCTTTCTACATTTTGAGATTTCTTGTTGA

mRNA sequence

ATGGCAAAATCGCTTCCATCGCCAACTCGCCTTCAGCAATTCGCCAAGGTCATCGTCTCCTCCAAGAAGCCCCAATCCGCCGCACCTAACCCCAAGTCTCGGATCCGAGTTTCGCCGCCCGAAACTCCGATCTCCGGTACCGTCCGAGTCATCTCGGAGCTGAAGAAGAAGAAGAAAAACATGGAGGAGGAGAAGGAGGAGAAGAATCGGACTCCGTTGGCCGATGTGGTCTCGGACTGCGTCAAGCGGTGGTTTCAGGACACGCTCAAGGAGGCCAGCACCGGCGATACGTCGATGCAGGTCTTGGTAGGCCAGATGTTTTGCTCCGGCTACGGCGTTCCTAAGGACACTCAGAAGGTTTGCTTTCTACATTTTGAGATTTCTTGTTGA

Coding sequence (CDS)

ATGGCAAAATCGCTTCCATCGCCAACTCGCCTTCAGCAATTCGCCAAGGTCATCGTCTCCTCCAAGAAGCCCCAATCCGCCGCACCTAACCCCAAGTCTCGGATCCGAGTTTCGCCGCCCGAAACTCCGATCTCCGGTACCGTCCGAGTCATCTCGGAGCTGAAGAAGAAGAAGAAAAACATGGAGGAGGAGAAGGAGGAGAAGAATCGGACTCCGTTGGCCGATGTGGTCTCGGACTGCGTCAAGCGGTGGTTTCAGGACACGCTCAAGGAGGCCAGCACCGGCGATACGTCGATGCAGGTCTTGGTAGGCCAGATGTTTTGCTCCGGCTACGGCGTTCCTAAGGACACTCAGAAGGTTTGCTTTCTACATTTTGAGATTTCTTGTTGA

Protein sequence

MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQVLVGQMFCSGYGVPKDTQKVCFLHFEISC
BLAST of Lsi04G010460 vs. TrEMBL
Match: A0A0A0KM25_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G218760 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.7e-39
Identity = 92/119 (77.31%), Postives = 98/119 (82.35%), Query Frame = 1

Query: 1   MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKN 60
           MAKSLPSP R QQFAK++ SSK PQS     KSRIR SP ETPISG+VRVISE     KN
Sbjct: 1   MAKSLPSPARFQQFAKLVFSSKNPQSQPK--KSRIRASPSETPISGSVRVISE---PNKN 60

Query: 61  MEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQVLVGQMFCSGYGVPKDTQK 120
              E+EEKNRTPLADVVSDCVKRWFQDTLKEA  GDTSMQVLVGQMFCSGYGVPK+T+K
Sbjct: 61  KYMEEEEKNRTPLADVVSDCVKRWFQDTLKEAKAGDTSMQVLVGQMFCSGYGVPKNTKK 114

BLAST of Lsi04G010460 vs. TrEMBL
Match: F6HC95_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g02170 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.5e-24
Identity = 69/119 (57.98%), Postives = 79/119 (66.39%), Query Frame = 1

Query: 1   MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKN 60
           M KSLP+ TRLQ+FA+V+ S K        P SR RVSPPET      R+ SE  + K  
Sbjct: 1   MGKSLPTTTRLQEFARVVTSEKFQSPKHAKPISRNRVSPPETTKLRGARLGSERVRLKM- 60

Query: 61  MEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQVLVGQMFCSGYGVPKDTQK 120
             E  E + R PLA VVSDC KRWFQDTLKEA  GDT+MQVLVGQM+ SGYGV +D QK
Sbjct: 61  --ESSEGQRRMPLAQVVSDCAKRWFQDTLKEAKAGDTTMQVLVGQMYFSGYGVSRDAQK 116

BLAST of Lsi04G010460 vs. TrEMBL
Match: M1BIN7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017898 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.4e-24
Identity = 73/143 (51.05%), Postives = 88/143 (61.54%), Query Frame = 1

Query: 1   MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVI-----SELK 60
           M KSLPSP R+Q FA++I S++  +     P SRIR  P  +P++   R +     SE +
Sbjct: 1   MGKSLPSPNRIQDFARIISSNRIQRPTQVKPASRIRSVP--SPVAAKFRAVVDGDSSERR 60

Query: 61  KK-KKNMEEEKEEKN-----------RTPLADVVSDCVKRWFQDTLKEASTGDTSMQVLV 120
            K KKNMEE     N           R PLADVV+DCVKRWF DTLKEA  GD +MQVLV
Sbjct: 61  LKLKKNMEEASSNSNSNSNTSSSNQRRLPLADVVADCVKRWFHDTLKEAKAGDANMQVLV 120

Query: 121 GQMFCSGYGVPKDTQKV---CFL 124
           GQM+ SGYG+ KD QKV   CFL
Sbjct: 121 GQMYFSGYGISKDAQKVFDFCFL 141

BLAST of Lsi04G010460 vs. TrEMBL
Match: A0A103Y988_CYNCS (Tetratricopeptide-like helical OS=Cynara cardunculus var. scolymus GN=Ccrd_016856 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.6e-23
Identity = 66/125 (52.80%), Postives = 84/125 (67.20%), Query Frame = 1

Query: 1   MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPK---SRIRVSPPETPI-SGTVRVISELKK 60
           M KS+PS  RLQ FA+VI S +  Q +   PK   +R RV PP  P  S  +R++   K+
Sbjct: 1   MGKSVPSSARLQDFARVITSDRIQQQSKRGPKPVFNRTRVVPPPEPAKSKGIRIVQSEKQ 60

Query: 61  KK--KNMEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQVLVGQMFCSGYGVP 120
           ++  K MEE      R PLA+VV +C +RWFQ+TL++A TGDTSMQVLVGQM+CSGYGV 
Sbjct: 61  QQRVKIMEENSSMDRRIPLAEVVLECSRRWFQETLRDAKTGDTSMQVLVGQMYCSGYGVV 120

BLAST of Lsi04G010460 vs. TrEMBL
Match: M1BIN6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017898 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.0e-23
Identity = 69/136 (50.74%), Postives = 84/136 (61.76%), Query Frame = 1

Query: 1   MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVI-----SELK 60
           M KSLPSP R+Q FA++I S++  +     P SRIR  P  +P++   R +     SE +
Sbjct: 1   MGKSLPSPNRIQDFARIISSNRIQRPTQVKPASRIRSVP--SPVAAKFRAVVDGDSSERR 60

Query: 61  KK-KKNMEEEKEEKN-----------RTPLADVVSDCVKRWFQDTLKEASTGDTSMQVLV 120
            K KKNMEE     N           R PLADVV+DCVKRWF DTLKEA  GD +MQVLV
Sbjct: 61  LKLKKNMEEASSNSNSNSNTSSSNQRRLPLADVVADCVKRWFHDTLKEAKAGDANMQVLV 120

BLAST of Lsi04G010460 vs. TAIR10
Match: AT5G05360.1 (AT5G05360.1 unknown protein)

HSP 1 Score: 87.0 bits (214), Expect = 9.0e-18
Identity = 54/123 (43.90%), Postives = 67/123 (54.47%), Query Frame = 1

Query: 7   SPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRV-ISELKKKKKNMEEE- 66
           S  R  +FA  + S    +   P+P  R +V   +T    T  +  S L K +K      
Sbjct: 4   SMVRFAEFAIRLSSENPTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLEKAGSHSG 63

Query: 67  --------KEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQVLVGQMFCSGYGVPKD 120
                    +  NR PLA VV DCV+RWFQDTLKEA +GD  MQVLVGQM+CSGYG+PKD
Sbjct: 64  SNPAPASGSDPINRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKD 123

BLAST of Lsi04G010460 vs. TAIR10
Match: AT2G38450.1 (AT2G38450.1 Sel1-like (InterPro:IPR006597))

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-14
Identity = 47/119 (39.50%), Postives = 63/119 (52.94%), Query Frame = 1

Query: 1   MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKN 60
           M KS+P  T L+  +  +                I+ S P  PIS    + S  K     
Sbjct: 1   MGKSIPVKTGLRGASAAVAGF-------------IKSSKPIRPISS---MDSSDKDSSST 60

Query: 61  MEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQVLVGQMFCSGYGVPKDTQK 120
               +  +   PL+ VVSDC KRWF+DTL+EA  G+ +MQVL+GQM+ SGYGVPKD +K
Sbjct: 61  TTTSETTRRFVPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKDARK 103

BLAST of Lsi04G010460 vs. NCBI nr
Match: gi|449457439|ref|XP_004146456.1| (PREDICTED: uncharacterized protein LOC101213931 isoform X2 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 3.9e-39
Identity = 92/119 (77.31%), Postives = 98/119 (82.35%), Query Frame = 1

Query: 1   MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKN 60
           MAKSLPSP R QQFAK++ SSK PQS     KSRIR SP ETPISG+VRVISE     KN
Sbjct: 1   MAKSLPSPARFQQFAKLVFSSKNPQSQPK--KSRIRASPSETPISGSVRVISE---PNKN 60

Query: 61  MEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQVLVGQMFCSGYGVPKDTQK 120
              E+EEKNRTPLADVVSDCVKRWFQDTLKEA  GDTSMQVLVGQMFCSGYGVPK+T+K
Sbjct: 61  KYMEEEEKNRTPLADVVSDCVKRWFQDTLKEAKAGDTSMQVLVGQMFCSGYGVPKNTKK 114

BLAST of Lsi04G010460 vs. NCBI nr
Match: gi|778701442|ref|XP_011655024.1| (PREDICTED: uncharacterized protein LOC101213931 isoform X3 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 3.9e-39
Identity = 92/119 (77.31%), Postives = 98/119 (82.35%), Query Frame = 1

Query: 1   MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKN 60
           MAKSLPSP R QQFAK++ SSK PQS     KSRIR SP ETPISG+VRVISE     KN
Sbjct: 1   MAKSLPSPARFQQFAKLVFSSKNPQSQPK--KSRIRASPSETPISGSVRVISE---PNKN 60

Query: 61  MEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQVLVGQMFCSGYGVPKDTQK 120
              E+EEKNRTPLADVVSDCVKRWFQDTLKEA  GDTSMQVLVGQMFCSGYGVPK+T+K
Sbjct: 61  KYMEEEEKNRTPLADVVSDCVKRWFQDTLKEAKAGDTSMQVLVGQMFCSGYGVPKNTKK 114

BLAST of Lsi04G010460 vs. NCBI nr
Match: gi|449457437|ref|XP_004146455.1| (PREDICTED: uncharacterized protein LOC101213931 isoform X1 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 3.9e-39
Identity = 92/119 (77.31%), Postives = 98/119 (82.35%), Query Frame = 1

Query: 1   MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKN 60
           MAKSLPSP R QQFAK++ SSK PQS     KSRIR SP ETPISG+VRVISE     KN
Sbjct: 1   MAKSLPSPARFQQFAKLVFSSKNPQSQPK--KSRIRASPSETPISGSVRVISE---PNKN 60

Query: 61  MEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQVLVGQMFCSGYGVPKDTQK 120
              E+EEKNRTPLADVVSDCVKRWFQDTLKEA  GDTSMQVLVGQMFCSGYGVPK+T+K
Sbjct: 61  KYMEEEEKNRTPLADVVSDCVKRWFQDTLKEAKAGDTSMQVLVGQMFCSGYGVPKNTKK 114

BLAST of Lsi04G010460 vs. NCBI nr
Match: gi|659114088|ref|XP_008456899.1| (PREDICTED: uncharacterized protein LOC103496713 isoform X1 [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 5.1e-39
Identity = 91/119 (76.47%), Postives = 99/119 (83.19%), Query Frame = 1

Query: 1   MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKN 60
           MAKSLPSPTR QQFAK++ SSK PQS  P  KSRIR SP ETPISG+VRVI E     KN
Sbjct: 1   MAKSLPSPTRFQQFAKLVFSSKNPQS--PPKKSRIRASPSETPISGSVRVILE---PNKN 60

Query: 61  MEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQVLVGQMFCSGYGVPKDTQK 120
              E++EKNRTPL+DVVSDCVKRWFQDTLKEA  GDTSMQVLVGQMFCSGYGVPK+T+K
Sbjct: 61  KYMEEKEKNRTPLSDVVSDCVKRWFQDTLKEAKAGDTSMQVLVGQMFCSGYGVPKNTKK 114

BLAST of Lsi04G010460 vs. NCBI nr
Match: gi|659114090|ref|XP_008456900.1| (PREDICTED: uncharacterized protein LOC103496713 isoform X2 [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 5.1e-39
Identity = 91/119 (76.47%), Postives = 99/119 (83.19%), Query Frame = 1

Query: 1   MAKSLPSPTRLQQFAKVIVSSKKPQSAAPNPKSRIRVSPPETPISGTVRVISELKKKKKN 60
           MAKSLPSPTR QQFAK++ SSK PQS  P  KSRIR SP ETPISG+VRVI E     KN
Sbjct: 1   MAKSLPSPTRFQQFAKLVFSSKNPQS--PPKKSRIRASPSETPISGSVRVILE---PNKN 60

Query: 61  MEEEKEEKNRTPLADVVSDCVKRWFQDTLKEASTGDTSMQVLVGQMFCSGYGVPKDTQK 120
              E++EKNRTPL+DVVSDCVKRWFQDTLKEA  GDTSMQVLVGQMFCSGYGVPK+T+K
Sbjct: 61  KYMEEKEKNRTPLSDVVSDCVKRWFQDTLKEAKAGDTSMQVLVGQMFCSGYGVPKNTKK 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KM25_CUCSA2.7e-3977.31Uncharacterized protein OS=Cucumis sativus GN=Csa_5G218760 PE=4 SV=1[more]
F6HC95_VITVI2.5e-2457.98Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g02170 PE=4 SV=... [more]
M1BIN7_SOLTU9.4e-2451.05Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017898 PE=4 SV=1[more]
A0A103Y988_CYNCS3.6e-2352.80Tetratricopeptide-like helical OS=Cynara cardunculus var. scolymus GN=Ccrd_01685... [more]
M1BIN6_SOLTU8.0e-2350.74Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017898 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G05360.19.0e-1843.90 unknown protein[more]
AT2G38450.12.7e-1439.50 Sel1-like (InterPro:IPR006597)[more]
Match NameE-valueIdentityDescription
gi|449457439|ref|XP_004146456.1|3.9e-3977.31PREDICTED: uncharacterized protein LOC101213931 isoform X2 [Cucumis sativus][more]
gi|778701442|ref|XP_011655024.1|3.9e-3977.31PREDICTED: uncharacterized protein LOC101213931 isoform X3 [Cucumis sativus][more]
gi|449457437|ref|XP_004146455.1|3.9e-3977.31PREDICTED: uncharacterized protein LOC101213931 isoform X1 [Cucumis sativus][more]
gi|659114088|ref|XP_008456899.1|5.1e-3976.47PREDICTED: uncharacterized protein LOC103496713 isoform X1 [Cucumis melo][more]
gi|659114090|ref|XP_008456900.1|5.1e-3976.47PREDICTED: uncharacterized protein LOC103496713 isoform X2 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G010460.1Lsi04G010460.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 44..71
scor
NoneNo IPR availablePANTHERPTHR36792FAMILY NOT NAMEDcoord: 8..119
score: 1.9
NoneNo IPR availablePANTHERPTHR36792:SF2SUBFAMILY NOT NAMEDcoord: 8..119
score: 1.9

The following gene(s) are paralogous to this gene:

None