Lsi04G005530 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G005530
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionTransmembrane protein, putative
Locationchr04 : 5057433 .. 5057993 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGAACTTCAACAACAACAGCAACCGCAACAGCAACAGCAGCCGGCTTTTGTTTATCCCGACACGGCGGCGACGGCTGGTAGCCAACCTCCGCCTTCCCATCATTCCAACGGCTCATTTGGGGCAGTTTTTATAGTTCTTTCGGTTATTGTTGTTATATCGGCTCTTGCTTGTTTCCTTGGGCGTCTCTGCAACCGGCGAGTTGAAAACCAGAGGCCGAAGCCGGAGAAAAGCCACGGCGGCGCTCGTCCTAGAGGAAAAGAACCCAAATTGCATCCTGATAAAGAAGGAGATATTGAATTTGGATTTGATTTGAGAAACCCAAATGGGAAAGGCAAATTCCCACCTGGTGGAAATGGAGGAAGCAAAGGCAAAGGCAATGGCAATGGCAATGGTAATGGTAATGGGCCTCATGGACCTAATGGGCTTAATGGGCCTAATGGCCATGGAAATAGCTTCAAACCCTTTGAAAATGGCGGTGAAACGAGAAGCGAAATTAAACATACAGATCATCATGAAGGAGATTTCAATTTCAAAGCTGCAGGGCATCATGTTTGA

mRNA sequence

ATGTCGGAACTTCAACAACAACAGCAACCGCAACAGCAACAGCAGCCGGCTTTTGTTTATCCCGACACGGCGGCGACGGCTGGTAGCCAACCTCCGCCTTCCCATCATTCCAACGGCTCATTTGGGGCAGTTTTTATAGTTCTTTCGGTTATTGTTGTTATATCGGCTCTTGCTTGTTTCCTTGGGCGTCTCTGCAACCGGCGAGTTGAAAACCAGAGGCCGAAGCCGGAGAAAAGCCACGGCGGCGCTCGTCCTAGAGGAAAAGAACCCAAATTGCATCCTGATAAAGAAGGAGATATTGAATTTGGATTTGATTTGAGAAACCCAAATGGGAAAGGCAAATTCCCACCTGGTGGAAATGGAGGAAGCAAAGGCAAAGGCAATGGCAATGGCAATGGTAATGGTAATGGGCCTCATGGACCTAATGGGCTTAATGGGCCTAATGGCCATGGAAATAGCTTCAAACCCTTTGAAAATGGCGGTGAAACGAGAAGCGAAATTAAACATACAGATCATCATGAAGGAGATTTCAATTTCAAAGCTGCAGGGCATCATGTTTGA

Coding sequence (CDS)

ATGTCGGAACTTCAACAACAACAGCAACCGCAACAGCAACAGCAGCCGGCTTTTGTTTATCCCGACACGGCGGCGACGGCTGGTAGCCAACCTCCGCCTTCCCATCATTCCAACGGCTCATTTGGGGCAGTTTTTATAGTTCTTTCGGTTATTGTTGTTATATCGGCTCTTGCTTGTTTCCTTGGGCGTCTCTGCAACCGGCGAGTTGAAAACCAGAGGCCGAAGCCGGAGAAAAGCCACGGCGGCGCTCGTCCTAGAGGAAAAGAACCCAAATTGCATCCTGATAAAGAAGGAGATATTGAATTTGGATTTGATTTGAGAAACCCAAATGGGAAAGGCAAATTCCCACCTGGTGGAAATGGAGGAAGCAAAGGCAAAGGCAATGGCAATGGCAATGGTAATGGTAATGGGCCTCATGGACCTAATGGGCTTAATGGGCCTAATGGCCATGGAAATAGCTTCAAACCCTTTGAAAATGGCGGTGAAACGAGAAGCGAAATTAAACATACAGATCATCATGAAGGAGATTTCAATTTCAAAGCTGCAGGGCATCATGTTTGA

Protein sequence

MSELQQQQQPQQQQQPAFVYPDTAATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVENQRPKPEKSHGGARPRGKEPKLHPDKEGDIEFGFDLRNPNGKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHHV
Homology
[Close]
BLAST of Lsi04G005530 vs. TrEMBL
Match: E5GBJ1_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.8e-76
Identity = 166/193 (86.01%), Postives = 169/193 (87.56%), Query Frame = 1 

Query: 1   MSELQQQQ-----QPQQQQQPAFVYPDTAAT-AGSQPPPSHHSNGSFGAVFIVLSVIVVI 60
           MSELQQQQ     Q QQQQQPA+VYPDTAAT AGSQ PPSHHSNGSFGAVFIVL+VIVVI
Sbjct: 1   MSELQQQQEQPQQQQQQQQQPAYVYPDTAATSAGSQVPPSHHSNGSFGAVFIVLAVIVVI 60

Query: 61  SALACFLGRLCNRRVEN-QRPKPEKSHGGARP-RGKEPKLHPDKEGDIEFGFDLRNPNGK 120
           SALACFLGRLCNRRVEN QRPKPEKSH GARP RGKEPKLHPDKEGDIEFGFDLRNP+GK
Sbjct: 61  SALACFLGRLCNRRVENHQRPKPEKSHAGARPTRGKEPKLHPDKEGDIEFGFDLRNPSGK 120

Query: 121 GKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDH 180
           GKFPPGGNG   G G   G GNGNGP G   LNGPNGHGNSFKPFENGGETRSEIKHTDH
Sbjct: 121 GKFPPGGNGNGNGNGGSKGKGNGNGPIG---LNGPNGHGNSFKPFENGGETRSEIKHTDH 180

Query: 181 HEGDFNFKAAGHH 186
           HEGDFNFKA GHH
Sbjct: 181 HEGDFNFKAGGHH 190

[Close]
BLAST of Lsi04G005530 vs. TrEMBL
Match: A0A0A0KTP5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G601520 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 4.4e-75
Identity = 166/190 (87.37%), Postives = 171/190 (90.00%), Query Frame = 1 

Query: 1   MSELQQQQ--QPQQQQQPAFVYPDTAAT-AGSQPPPSHHSNGSFGAVFIVLSVIVVISAL 60
           MSELQQQQ  + QQQQQPA+VYPDTAAT AGSQ PP HHSNGSFGAVFIVL+VIVVISAL
Sbjct: 1   MSELQQQQPQRQQQQQQPAYVYPDTAATSAGSQVPPPHHSNGSFGAVFIVLAVIVVISAL 60

Query: 61  ACFLGRLCNRRVEN-QRPKPEKSHGGARP-RGKEPKLHPDKEGDIEFGFDLRNPNGKGKF 120
           ACFLGRLCNRRVEN QRPKPEKSH GARP RGKEPKLHPDKEGDIEFGFDLRNP+GKGKF
Sbjct: 61  ACFLGRLCNRRVENHQRPKPEKSHSGARPTRGKEPKLHPDKEGDIEFGFDLRNPSGKGKF 120

Query: 121 PPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEG 180
           P GGNG S G GNG   G GNG +GP GLNGPNGHGNSFKPFENGGETRSEIKHTDHHEG
Sbjct: 121 PSGGNG-STGNGNGGSKGKGNG-NGPIGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEG 180

Query: 181 DFNFKAAGHH 186
           DFNFKAAGHH
Sbjct: 181 DFNFKAAGHH 188

[Close]
BLAST of Lsi04G005530 vs. TrEMBL
Match: M5XGJ4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013231mg PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.0e-15
Identity = 57/105 (54.29%), Postives = 67/105 (63.81%), Query Frame = 1 

Query: 1   MSELQQQQQPQQQQQPAFVYPDTAATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACF 60
           MS LQ QQQ     QPA VYP+       QP  SHHSNGSFG VFIVL+VIVVISA+ACF
Sbjct: 1   MSSLQPQQQ-----QPALVYPNNMR---GQPSSSHHSNGSFGTVFIVLAVIVVISAIACF 60

Query: 61  LGRLCNRRVENQRPKPEKSHGGARPRGKEPKL-HPDKEGDIEFGF 105
           LGRLCNRR+ N +P  + +H   RP  KE  + H   +G    G+
Sbjct: 61  LGRLCNRRLHNSKPNKQPAH-NFRPSKKEAAVNHNHMDGSESRGY 96

[Close]
BLAST of Lsi04G005530 vs. TrEMBL
Match: A0A0L9TM30_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g120800 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.8e-15
Identity = 75/163 (46.01%), Postives = 95/163 (58.28%), Query Frame = 1 

Query: 12  QQQQPAFVYPDTAATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVEN 71
           Q QQP  VYP       +QPP SHHSNGSFGAVFIVL++I+VIS +AC LGRLCN+R  +
Sbjct: 6   QPQQPVQVYPT------NQPPSSHHSNGSFGAVFIVLAIILVISVVACVLGRLCNKRYNS 65

Query: 72  QRPKPEKSHGGARPRGKEPKLH---PDKEGDIEFGFDLRNPNGKGKFPPGGNGGSKGKGN 131
                  S     P+   P++H   P  EGDIEFG D R P      PP      +G+G+
Sbjct: 66  H----SSSSSQRAPKQHRPQVHDLRPRDEGDIEFGVDKRMP------PPIIRTKVQGQGH 125

Query: 132 GNGNGNG-NGPHGPNGLNGPNGHGN-SFKPFE----NGGETRS 166
           G+G+G+G +G HG     GP+ H N + K FE    NG E R+
Sbjct: 126 GHGHGHGHHGHHGHGASTGPHRHVNDNMKEFEMRAGNGEELRA 152

[Close]
BLAST of Lsi04G005530 vs. TrEMBL
Match: A0A0S3R266_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G239500 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.8e-15
Identity = 75/163 (46.01%), Postives = 95/163 (58.28%), Query Frame = 1 

Query: 12  QQQQPAFVYPDTAATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVEN 71
           Q QQP  VYP       +QPP SHHSNGSFGAVFIVL++I+VIS +AC LGRLCN+R  +
Sbjct: 6   QPQQPVQVYPT------NQPPSSHHSNGSFGAVFIVLAIILVISVVACVLGRLCNKRYNS 65

Query: 72  QRPKPEKSHGGARPRGKEPKLH---PDKEGDIEFGFDLRNPNGKGKFPPGGNGGSKGKGN 131
                  S     P+   P++H   P  EGDIEFG D R P      PP      +G+G+
Sbjct: 66  H----SSSSSQRAPKQHRPQVHDLRPRDEGDIEFGVDKRMP------PPIIRTKVQGQGH 125

Query: 132 GNGNGNG-NGPHGPNGLNGPNGHGN-SFKPFE----NGGETRS 166
           G+G+G+G +G HG     GP+ H N + K FE    NG E R+
Sbjct: 126 GHGHGHGHHGHHGHGASTGPHRHVNDNMKEFEMRAGNGEELRA 152

[Close]
BLAST of Lsi04G005530 vs. TAIR10
Match: AT1G70470.1 (AT1G70470.1 unknown protein)

HSP 1 Score: 68.2 bits (165), Expect = 6.2e-12
Identity = 63/149 (42.28%), Postives = 80/149 (53.69%), Query Frame = 1 

Query: 9   QPQQQQQPAFVYPDTAA-TAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNR 68
           QPQ+ QQP  VYP T++ T+ S  P S  S+GSFG  FIVL+ I+V++ALAC  GRLCNR
Sbjct: 4   QPQEFQQPQ-VYPSTSSSTSSSFSPSSSGSSGSFGTAFIVLAAILVLAALACVFGRLCNR 63

Query: 69  -------RVENQRPKPEKSHGGARPRGKEPKLHPDKEGDIEFGFDLRNPNGKGKFPPGGN 128
                  +  N+  K EK         +  +  P + GD+EFGFD++ P    K P G N
Sbjct: 64  GGKQHKDKNNNKASKHEKPSSKKSREIRPVEREPRERGDVEFGFDMKRPGPMSK-PTGRN 123

Query: 129 GG--SKGKGNGNGNGNGNGPHGPNGLNGP 148
           GG    G  N  G G G G  G  G   P
Sbjct: 124 GGDIEFGFDNKRGGGGGGGGGGKGGKRPP 150

[Close]
BLAST of Lsi04G005530 vs. TAIR10
Match: AT1G23530.1 (AT1G23530.1 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-09
Identity = 68/184 (36.96%), Postives = 88/184 (47.83%), Query Frame = 1 

Query: 8   QQPQQQQQPAFVYPDTA----ATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGR 67
           Q  QQ QQP  VYP+          ++P  S  S+G+FG VFIVL+VI V+SALAC  GR
Sbjct: 4   QGVQQMQQPIVVYPNAYNKQYPDPSTKPSSSSGSSGNFGTVFIVLAVIFVLSALACVFGR 63

Query: 68  LCNR------RVENQRPKPEKSHGGARPRGKEPKLHPDKEGDIEFGFDLRNPNGKGKFPP 127
           LCNR      +  ++ PK EK+        +  +  P + GD++FGFD++ P    K P 
Sbjct: 64  LCNRESRAAKQQHSKHPKHEKASSKKSREIRPVEREPRERGDMDFGFDMKRPEPIEK-PS 123

Query: 128 GGNGG--------SKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKH 174
           G +GG        +K    G   G G GP  PN       H   FK  ENG         
Sbjct: 124 GRDGGEDIEFGFDNKRGERGREGGGGGGPPPPN-----IKHAVRFKLPENG--------- 171

[Close]
BLAST of Lsi04G005530 vs. NCBI nr
Match: gi|659090788|ref|XP_008446202.1| (PREDICTED: putative mediator of RNA polymerase II transcription subunit 19 [Cucumis melo])

HSP 1 Score: 293.5 bits (750), Expect = 2.6e-76
Identity = 166/193 (86.01%), Postives = 169/193 (87.56%), Query Frame = 1 

Query: 1   MSELQQQQ-----QPQQQQQPAFVYPDTAAT-AGSQPPPSHHSNGSFGAVFIVLSVIVVI 60
           MSELQQQQ     Q QQQQQPA+VYPDTAAT AGSQ PPSHHSNGSFGAVFIVL+VIVVI
Sbjct: 1   MSELQQQQEQPQQQQQQQQQPAYVYPDTAATSAGSQVPPSHHSNGSFGAVFIVLAVIVVI 60

Query: 61  SALACFLGRLCNRRVEN-QRPKPEKSHGGARP-RGKEPKLHPDKEGDIEFGFDLRNPNGK 120
           SALACFLGRLCNRRVEN QRPKPEKSH GARP RGKEPKLHPDKEGDIEFGFDLRNP+GK
Sbjct: 61  SALACFLGRLCNRRVENHQRPKPEKSHAGARPTRGKEPKLHPDKEGDIEFGFDLRNPSGK 120

Query: 121 GKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDH 180
           GKFPPGGNG   G G   G GNGNGP G   LNGPNGHGNSFKPFENGGETRSEIKHTDH
Sbjct: 121 GKFPPGGNGNGNGNGGSKGKGNGNGPIG---LNGPNGHGNSFKPFENGGETRSEIKHTDH 180

Query: 181 HEGDFNFKAAGHH 186
           HEGDFNFKA GHH
Sbjct: 181 HEGDFNFKAGGHH 190

[Close]
BLAST of Lsi04G005530 vs. NCBI nr
Match: gi|778705033|ref|XP_011655621.1| (PREDICTED: uncharacterized protein LOC105435563 [Cucumis sativus])

HSP 1 Score: 288.9 bits (738), Expect = 6.4e-75
Identity = 166/190 (87.37%), Postives = 171/190 (90.00%), Query Frame = 1 

Query: 1   MSELQQQQ--QPQQQQQPAFVYPDTAAT-AGSQPPPSHHSNGSFGAVFIVLSVIVVISAL 60
           MSELQQQQ  + QQQQQPA+VYPDTAAT AGSQ PP HHSNGSFGAVFIVL+VIVVISAL
Sbjct: 1   MSELQQQQPQRQQQQQQPAYVYPDTAATSAGSQVPPPHHSNGSFGAVFIVLAVIVVISAL 60

Query: 61  ACFLGRLCNRRVEN-QRPKPEKSHGGARP-RGKEPKLHPDKEGDIEFGFDLRNPNGKGKF 120
           ACFLGRLCNRRVEN QRPKPEKSH GARP RGKEPKLHPDKEGDIEFGFDLRNP+GKGKF
Sbjct: 61  ACFLGRLCNRRVENHQRPKPEKSHSGARPTRGKEPKLHPDKEGDIEFGFDLRNPSGKGKF 120

Query: 121 PPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEG 180
           P GGNG S G GNG   G GNG +GP GLNGPNGHGNSFKPFENGGETRSEIKHTDHHEG
Sbjct: 121 PSGGNG-STGNGNGGSKGKGNG-NGPIGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEG 180

Query: 181 DFNFKAAGHH 186
           DFNFKAAGHH
Sbjct: 181 DFNFKAAGHH 188

[Close]
BLAST of Lsi04G005530 vs. NCBI nr
Match: gi|645230198|ref|XP_008221824.1| (PREDICTED: uncharacterized protein LOC103321770 [Prunus mume])

HSP 1 Score: 94.4 bits (233), Expect = 2.3e-16
Identity = 75/158 (47.47%), Postives = 87/158 (55.06%), Query Frame = 1 

Query: 1   MSELQQQQQPQQQQQPAFVYPDTAATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACF 60
           MS LQ QQQ     QPA VYP+       QP  SHHSNGSFG VFIVL+VIVVISA+ACF
Sbjct: 1   MSSLQPQQQ-----QPALVYPNNVR---GQPSSSHHSNGSFGTVFIVLAVIVVISAIACF 60

Query: 61  LGRLCNRRVENQRPKPEKSHGGARPRGKE---------------PKLHPDKEGDIEFGFD 120
           LGRLCNRR+ N +P  + +H   RP  KE               P     K+ DIEFGFD
Sbjct: 61  LGRLCNRRLHNSKPNKQPAH-NLRPSKKEAVVDHNHMEFGNNNNPSFRAPKDADIEFGFD 120

Query: 121 LRNPNGKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNG 144
            + PNG          GS+ +  G  N N + PH  NG
Sbjct: 121 KKIPNG---------NGSRSESRGYMN-NHSKPHHGNG 139

[Close]
BLAST of Lsi04G005530 vs. NCBI nr
Match: gi|1009153616|ref|XP_015894729.1| (PREDICTED: uncharacterized protein LOC107428674 [Ziziphus jujuba])

HSP 1 Score: 93.2 bits (230), Expect = 5.1e-16
Identity = 84/192 (43.75%), Postives = 100/192 (52.08%), Query Frame = 1 

Query: 3   ELQQQQQPQQQQQPAFVYPDTAATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLG 62
           E Q Q QPQQQQQP  VYP+T      QPP SHHSNGSFG VFIVL++IVVISA+ACFLG
Sbjct: 11  EQQSQPQPQQQQQPVLVYPNTVT---KQPPNSHHSNGSFGTVFIVLAIIVVISAIACFLG 70

Query: 63  RLCNRRVENQRPKPEKSHGGARPRGKE---------PKLHPDKEGDIEFGF---DLRNPN 122
           RLCNRR  N  PKP K    A+  G E          K+ P +    EFG      R   
Sbjct: 71  RLCNRRAHNSNPKPPKQSSRAKEGGSEGGNGKNNHHNKIRPKERPGSEFGSGTNGFRQKE 130

Query: 123 GKGKF-------PPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGET 176
           G  +F       P G    S+G G+  GNG  +G  G  G +G    G        GG+ 
Sbjct: 131 GDLEFGLDMRSKPSGFRSDSRGHGHA-GNGFRSGSRGHGGDHGIINGG--------GGDM 190

[Close]
BLAST of Lsi04G005530 vs. NCBI nr
Match: gi|764576533|ref|XP_011463201.1| (PREDICTED: uncharacterized protein LOC105351175 [Fragaria vesca subsp. vesca])

HSP 1 Score: 90.5 bits (223), Expect = 3.3e-15
Identity = 76/151 (50.33%), Postives = 87/151 (57.62%), Query Frame = 1 

Query: 5   QQQQQPQ----QQQQPAFVYPDTAATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACF 64
           QQ QQPQ    QQQQP  VYP+      ++PPPSHHSNGSFG+VFIVL+VIVVIS +ACF
Sbjct: 7   QQLQQPQPLAQQQQQPVLVYPNNV----NKPPPSHHSNGSFGSVFIVLAVIVVISGIACF 66

Query: 65  LGRLCNR-RVENQRPKPEKSHGGARPRGKEPKLHPD-----------KEG-DIEFGFDLR 124
           LGRLCNR R    +P  +  H G          H D           KEG DIEFGFD R
Sbjct: 67  LGRLCNRDRSHKSKPNKQPKHKGNHKTHPNEGHHGDHAERGNQHFRAKEGSDIEFGFDKR 126

Query: 125 NPNGKGKFPPGGNGGSKGKGNGNGNGNGNGP 139
            P+GK   P G N  S+    G+G  N N P
Sbjct: 127 IPSGK---PSGPNYTSRESRAGSGVINHNKP 150

The following BLAST results are available for this feature:
BLAST of Lsi04G005530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G005530 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBJ1_CUCME1.8e-7686.01Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0KTP5_CUCSA4.4e-7587.37Uncharacterized protein OS=Cucumis sativus GN=Csa_5G601520 PE=4 SV=1[more]
M5XGJ4_PRUPE3.0e-1554.29Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013231mg PE=4 SV=1[more]
A0A0L9TM30_PHAAN8.8e-1546.01Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g120800 PE=4 SV=1[more]
A0A0S3R266_PHAAN8.8e-1546.01Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G239500 PE=... [more]
BLAST of Lsi04G005530 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G70470.16.2e-1242.28 unknown protein[more]
AT1G23530.12.2e-0936.96 unknown protein[more]
BLAST of Lsi04G005530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090788|ref|XP_008446202.1|2.6e-7686.01PREDICTED: putative mediator of RNA polymerase II transcription subunit 19 [Cucu... [more]
gi|778705033|ref|XP_011655621.1|6.4e-7587.37PREDICTED: uncharacterized protein LOC105435563 [Cucumis sativus][more]
gi|645230198|ref|XP_008221824.1|2.3e-1647.47PREDICTED: uncharacterized protein LOC103321770 [Prunus mume][more]
gi|1009153616|ref|XP_015894729.1|5.1e-1643.75PREDICTED: uncharacterized protein LOC107428674 [Ziziphus jujuba][more]
gi|764576533|ref|XP_011463201.1|3.3e-1550.33PREDICTED: uncharacterized protein LOC105351175 [Fragaria vesca subsp. vesca][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G005530.1Lsi04G005530.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33429FAMILY NOT NAMEDcoord: 1..178
score: 3.8
NoneNo IPR availablePANTHERPTHR33429:SF7SUBFAMILY NOT NAMEDcoord: 1..178
score: 3.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi04G005530Csa5G601520Cucumber (Chinese Long) v2culsiB368
Lsi04G005530CSPI05G22650Wild cucumber (PI 183967)cpilsiB372
Lsi04G005530Cucsa.286090Cucumber (Gy14) v1cgylsiB465
Lsi04G005530CmaCh18G007970Cucurbita maxima (Rimu)cmalsiB383
Lsi04G005530CmaCh04G017350Cucurbita maxima (Rimu)cmalsiB670
Lsi04G005530CmoCh18G008010Cucurbita moschata (Rifu)cmolsiB368
Lsi04G005530Cla010082Watermelon (97103) v1lsiwmB312
Lsi04G005530MELO3C011993Melon (DHL92) v3.5.1lsimeB281
Lsi04G005530ClCG05G025370Watermelon (Charleston Gray)lsiwcgB283
Lsi04G005530MELO3C011993.2Melon (DHL92) v3.6.1lsimedB297
Lsi04G005530Cla97C05G107530Watermelon (97103) v2lsiwmbB284
Lsi04G005530Bhi07G001386Wax gourdlsiwgoB380
Lsi04G005530Cp4.1LG01g15290Cucurbita pepo (Zucchini)cpelsiB353
Lsi04G005530Carg14335Silver-seed gourdcarlsiB218
Lsi04G005530Carg14470Silver-seed gourdcarlsiB661
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G005530Cucurbita moschata (Rifu)cmolsiB162
Lsi04G005530Cucurbita moschata (Rifu)cmolsiB661
Lsi04G005530Cucurbita moschata (Rifu)cmolsiB716
Lsi04G005530Cucurbita pepo (Zucchini)cpelsiB030
Lsi04G005530Cucurbita pepo (Zucchini)cpelsiB089
Lsi04G005530Cucurbita pepo (Zucchini)cpelsiB673
Lsi04G005530Wild cucumber (PI 183967)cpilsiB050
Lsi04G005530Wild cucumber (PI 183967)cpilsiB193
Lsi04G005530Melon (DHL92) v3.5.1lsimeB289
Lsi04G005530Watermelon (Charleston Gray)lsiwcgB258
Lsi04G005530Watermelon (Charleston Gray)lsiwcgB269
Lsi04G005530Watermelon (Charleston Gray)lsiwcgB308
Lsi04G005530Watermelon (97103) v1lsiwmB323
Lsi04G005530Cucumber (Gy14) v2cgyblsiB047
Lsi04G005530Cucumber (Gy14) v2cgyblsiB179
Lsi04G005530Cucumber (Gy14) v2cgyblsiB337
Lsi04G005530Melon (DHL92) v3.6.1lsimedB303
Lsi04G005530Melon (DHL92) v3.6.1lsimedB327
Lsi04G005530Silver-seed gourdcarlsiB453
Lsi04G005530Silver-seed gourdcarlsiB566
Lsi04G005530Cucumber (Chinese Long) v3cuclsiB064
Lsi04G005530Cucumber (Chinese Long) v3cuclsiB057
Lsi04G005530Cucumber (Chinese Long) v3cuclsiB212
Lsi04G005530Cucumber (Chinese Long) v3cuclsiB393
Lsi04G005530Watermelon (97103) v2lsiwmbB256
Lsi04G005530Watermelon (97103) v2lsiwmbB305
Lsi04G005530Wax gourdlsiwgoB357
Lsi04G005530Wax gourdlsiwgoB376
Lsi04G005530Bottle gourd (USVL1VR-Ls)lsilsiB097
Lsi04G005530Bottle gourd (USVL1VR-Ls)lsilsiB149
Lsi04G005530Cucumber (Gy14) v1cgylsiB119
Lsi04G005530Cucumber (Gy14) v1cgylsiB554
Lsi04G005530Cucurbita maxima (Rimu)cmalsiB170
Lsi04G005530Cucurbita maxima (Rimu)cmalsiB381
Lsi04G005530Cucurbita maxima (Rimu)cmalsiB726