Carg14335 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14335
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	hybrid signal transduction histidine kinase L
Location	Cucurbita_argyrosperma_scaffold_040 : 566540 .. 567037 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGACCTTCAACAGCAGCAGCAGCAGCAGCAGCCGGCTTTGGTTTATCCCAACACTGCTGCCGTTGGCAGCCAACCTCCTCCTTCCCACCACTCCAACGGCTCATTCGGGGCAGTTTTTATAGTTCTTGCCGTTATTCTTGTCATATCCACTGTTGCTTGCTTCCTTGGCCGACTCTGCAACCGGCGAGCTGAAAACCAGAGGGCGAAGCCGGAGAAAACCCACGGCGGCGCTCGTCCCAGAGGGAAAGAACCCAAATTGCATCCTGACAAAGAAGGAGACATCGAATTTGGATTGGATTTGAGAAACCCAAATGGGAAAGGCAAAGCCCCATCTGGTGGAAATGGAGGAACCAAAGGCAACGGCCATGGGCCTAATGGGCCTAATGGCCATAGCCATGGGTTCAAACCCTTTGAAAATGGCCAAATCAAGCACGCGGATGATCATCATCATGAAGGGGATTTCAAGTTCAAAGCAGCAGCTCATCCGGTTTGA

mRNA sequence

ATGTCGGACCTTCAACAGCAGCAGCAGCAGCAGCAGCCGGCTTTGGTTTATCCCAACACTGCTGCCGTTGGCAGCCAACCTCCTCCTTCCCACCACTCCAACGGCTCATTCGGGGCAGTTTTTATAGTTCTTGCCGTTATTCTTGTCATATCCACTGTTGCTTGCTTCCTTGGCCGACTCTGCAACCGGCGAGCTGAAAACCAGAGGGCGAAGCCGGAGAAAACCCACGGCGGCGCTCGTCCCAGAGGGAAAGAACCCAAATTGCATCCTGACAAAGAAGGAGACATCGAATTTGGATTGGATTTGAGAAACCCAAATGGGAAAGGCAAAGCCCCATCTGGTGGAAATGGAGGAACCAAAGGCAACGGCCATGGGCCTAATGGGCCTAATGGCCATAGCCATGGGTTCAAACCCTTTGAAAATGGCCAAATCAAGCACGCGGATGATCATCATCATGAAGGGGATTTCAAGTTCAAAGCAGCAGCTCATCCGGTTTGA

Coding sequence (CDS)

ATGTCGGACCTTCAACAGCAGCAGCAGCAGCAGCAGCCGGCTTTGGTTTATCCCAACACTGCTGCCGTTGGCAGCCAACCTCCTCCTTCCCACCACTCCAACGGCTCATTCGGGGCAGTTTTTATAGTTCTTGCCGTTATTCTTGTCATATCCACTGTTGCTTGCTTCCTTGGCCGACTCTGCAACCGGCGAGCTGAAAACCAGAGGGCGAAGCCGGAGAAAACCCACGGCGGCGCTCGTCCCAGAGGGAAAGAACCCAAATTGCATCCTGACAAAGAAGGAGACATCGAATTTGGATTGGATTTGAGAAACCCAAATGGGAAAGGCAAAGCCCCATCTGGTGGAAATGGAGGAACCAAAGGCAACGGCCATGGGCCTAATGGGCCTAATGGCCATAGCCATGGGTTCAAACCCTTTGAAAATGGCCAAATCAAGCACGCGGATGATCATCATCATGAAGGGGATTTCAAGTTCAAAGCAGCAGCTCATCCGGTTTGA

Protein sequence

MSDLQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGRLCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGTKGNGHGPNGPNGHSHGFKPFENGQIKHADDHHHEGDFKFKAAAHPV

Homology

[Close]

BLAST of Carg14335 vs. NCBI nr
Match: XP_023543410.1 (uncharacterized protein LOC111803300 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.1 bits (492), Expect = 3.7e-46
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 51  STVACFLGRLCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGK 110
           STVACFLGRLCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGK
Sbjct: 99  STVACFLGRLCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGK 158

Query: 111 APSGGNXXXXXXXXXXXXXXXXXXXFKPFENGQIKHADDHHHEGDFKFKAAAHPV 166
           APSGGNXXXXXXXXXXXXXXXXXXXFKPFENGQIKHADD HHEGDFKFKAAAHPV
Sbjct: 159 APSGGNXXXXXXXXXXXXXXXXXXXFKPFENGQIKHADDDHHEGDFKFKAAAHPV 213

[Close]

BLAST of Carg14335 vs. NCBI nr
Match: XP_022956516.1 (uncharacterized protein LOC111458233 [Cucurbita moschata])

HSP 1 Score: 181.4 bits (459), Expect = 2.5e-42
Identity = 110/119 (92.44%), Postives = 110/119 (92.44%), Query Frame = 0


Query: 52  TVACFLGRLCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKA 111
           TVAC LGRLCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKA
Sbjct: 50  TVACLLGRLCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKA 109

Query: 112 PSGGNXXXXXXXXXXXXXXXXXXXFKPFEN-----GQIKHADDHHHEGDFKFKAAAHPV 166
           PSGG XXXXXXXXXXXXXXXXXX FKPFEN     GQIKHADD HHEGDFKFKAAAHPV
Sbjct: 110 PSGGXXXXXXXXXXXXXXXXXXXGFKPFENGGEMRGQIKHADDDHHEGDFKFKAAAHPV 168

[Close]

BLAST of Carg14335 vs. NCBI nr
Match: XP_022972292.1 (uncharacterized protein LOC111470841 [Cucurbita maxima] >XP_022972361.1 uncharacterized protein LOC111470841 [Cucurbita maxima])

HSP 1 Score: 181.0 bits (458), Expect = 3.2e-42
Identity = 109/120 (90.83%), Postives = 110/120 (91.67%), Query Frame = 0


Query: 51  STVACFLGRLCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGK 110
           STVACFLGRLCNRRAENQRAKPEKTHGGARPRGKEPKLHPDK+GDIEFGLDLRNPNGKGK
Sbjct: 48  STVACFLGRLCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKDGDIEFGLDLRNPNGKGK 107

Query: 111 APSGGNXXXXXXXXXXXXXXXXXXXFKPFEN-----GQIKHADDHHHEGDFKFKAAAHPV 166
           A SG  XXXXXXXXXXXXXXXXX  FKPFEN     GQIKHADDHHHEGDFKFKAAAHPV
Sbjct: 108 ALSGXXXXXXXXXXXXXXXXXXXHGFKPFENGGEMRGQIKHADDHHHEGDFKFKAAAHPV 167

[Close]

BLAST of Carg14335 vs. NCBI nr
Match: XP_022966907.1 (uncharacterized protein LOC111466471 [Cucurbita maxima])

HSP 1 Score: 128.3 bits (321), Expect = 2.5e-26
Identity = 81/118 (68.64%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 51  STVACFLGRLCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGK 110
           S +ACFLGRLCNRR  NQR KPEKTHG +  RGKEPKLHPDKEGDIEFG D RNPNGK  
Sbjct: 56  SALACFLGRLCNRRVVNQRRKPEKTHGRSHSRGKEPKLHPDKEGDIEFGFDSRNPNGKAT 115

Query: 111 APSGGNXXXXXXXXXXXXXXXXXXXFKPFENG-----QIKHADDHHHEGDFKFKAAAH 164
            P GGN       XXXXXXXXXXX FKPFENG     +IKHAD  HHE D  F+A  H
Sbjct: 116 FPPGGN--GGYKGXXXXXXXXXXXSFKPFENGGEMRSEIKHAD--HHEVDINFRAGGH 169

[Close]

BLAST of Carg14335 vs. NCBI nr
Match: XP_022945533.1 (uncharacterized protein LOC111449741 [Cucurbita moschata])

HSP 1 Score: 127.9 bits (320), Expect = 3.2e-26
Identity = 85/118 (72.03%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 51  STVACFLGRLCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGK 110
           S +ACFLGRLCNRR  NQR KPEKTHGG+  RGKEPKLHPDKEGDIEFG D RNPNGK  
Sbjct: 55  SALACFLGRLCNRRVVNQRRKPEKTHGGSHSRGKEPKLHPDKEGDIEFGFDSRNPNGKAS 114

Query: 111 APSGGNXXXXXXXXXXXXXXXXXXXFKPFENG-----QIKHADDHHHEGDFKFKAAAH 164
            P GGN   XXXXXXXXXXXXXXXXFKPF+NG     +IKHA DHH   D  F+A  H
Sbjct: 115 FPPGGN--GXXXXXXXXXXXXXXXXFKPFDNGGEMRSEIKHA-DHHEVVDINFRAGGH 169

[Close]

BLAST of Carg14335 vs. TrEMBL
Match: tr|A0A1S3BF63|A0A1S3BF63_CUCME (hybrid signal transduction histidine kinase L OS=Cucumis melo OX=3656 GN=LOC103489006 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.4e-25
Identity = 81/131 (61.83%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 51  STVACFLGRLCNRRAEN-QRAKPEKTHGGARP-RGKEPKLHPDKEGDIEFGLDLRNPNGK 110
           S +ACFLGRLCNRR EN QR KPEK+H GARP RGKEPKLHPDKEGDIEFG DLRNP+GK
Sbjct: 61  SALACFLGRLCNRRVENHQRPKPEKSHAGARPTRGKEPKLHPDKEGDIEFGFDLRNPSGK 120

Query: 111 GKAP-----------SGGNXXXXXXXXXXXXXXXXXXXFKPFENG-----QIKHADDHHH 164
           GK P               XXXXXXX            FKPFENG     +IKH D  HH
Sbjct: 121 GKFPXXXXXXXXXXXXXXXXXXXXXXIGLNGPNGHGNSFKPFENGGETRSEIKHTD--HH 180

[Close]

BLAST of Carg14335 vs. TrEMBL
Match: tr|E5GBJ1|E5GBJ1_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.4e-25
Identity = 81/131 (61.83%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 51  STVACFLGRLCNRRAEN-QRAKPEKTHGGARP-RGKEPKLHPDKEGDIEFGLDLRNPNGK 110
           S +ACFLGRLCNRR EN QR KPEK+H GARP RGKEPKLHPDKEGDIEFG DLRNP+GK
Sbjct: 61  SALACFLGRLCNRRVENHQRPKPEKSHAGARPTRGKEPKLHPDKEGDIEFGFDLRNPSGK 120

Query: 111 GKAP-----------SGGNXXXXXXXXXXXXXXXXXXXFKPFENG-----QIKHADDHHH 164
           GK P               XXXXXXX            FKPFENG     +IKH D  HH
Sbjct: 121 GKFPXXXXXXXXXXXXXXXXXXXXXXIGLNGPNGHGNSFKPFENGGETRSEIKHTD--HH 180

[Close]

BLAST of Carg14335 vs. TrEMBL
Match: tr|A0A0A0KTP5|A0A0A0KTP5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G601520 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24
Identity = 80/130 (61.54%), Postives = 84/130 (64.62%), Query Frame = 0


Query: 53  VACFLGRLCNRRAEN-QRAKPEKTHGGARP-RGKEPKLHPDKEGDIEFGLDLRNPNGKGK 112
           +ACFLGRLCNRR EN QR KPEK+H GARP RGKEPKLHPDKEGDIEFG DLRNP+GKGK
Sbjct: 60  LACFLGRLCNRRVENHQRPKPEKSHSGARPTRGKEPKLHPDKEGDIEFGFDLRNPSGKGK 119

Query: 113 ------------APSGGNXXXXXXXXXXXXXXXXXXXFKPFENG-----QIKHADDHHHE 164
                             XXXXXXX            FKPFENG     +IKH D  HHE
Sbjct: 120 XXXXXXXXXXXXXXXXXXXXXXXXXIGLNGPNGHGNSFKPFENGGETRSEIKHTD--HHE 179

[Close]

BLAST of Carg14335 vs. TrEMBL
Match: tr|A0A2I4H5P6|A0A2I4H5P6_9ROSI (uncharacterized protein LOC109013723 OS=Juglans regia OX=51240 GN=LOC109013723 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.1e-04
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 51  STVACFLGRLCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGK 110
           S +AC L RLCNRR +NQR  P++  G +RPR         + GDIEFG D+R P  K  
Sbjct: 52  SAIACCLSRLCNRRYKNQR--PKQNLGQSRPR---------ENGDIEFGSDMRTPTSKMA 106

Query: 111 APSGGN 117
           A  GG+
Sbjct: 112 ANGGGS 106

The following BLAST results are available for this feature:

BLAST of Carg14335 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023543410.1	3.7e-46	99.13	uncharacterized protein LOC111803300 [Cucurbita pepo subsp. pepo]	[more]
XP_022956516.1	2.5e-42	92.44	uncharacterized protein LOC111458233 [Cucurbita moschata]	[more]
XP_022972292.1	3.2e-42	90.83	uncharacterized protein LOC111470841 [Cucurbita maxima] >XP_022972361.1 uncharac...	[more]
XP_022966907.1	2.5e-26	68.64	uncharacterized protein LOC111466471 [Cucurbita maxima]	[more]
XP_022945533.1	3.2e-26	72.03	uncharacterized protein LOC111449741 [Cucurbita moschata]	[more]

BLAST of Carg14335 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg14335 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg14335 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BF63\|A0A1S3BF63_CUCME	1.4e-25	61.83	hybrid signal transduction histidine kinase L OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|E5GBJ1\|E5GBJ1_CUCME	1.4e-25	61.83	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0KTP5\|A0A0A0KTP5_CUCSA	1.5e-24	61.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G601520 PE=4 SV=1	[more]
tr\|A0A2I4H5P6\|A0A2I4H5P6_9ROSI	5.1e-04	46.97	uncharacterized protein LOC109013723 OS=Juglans regia OX=51240 GN=LOC109013723 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14335-RA	Carg14335-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..99
None	No IPR available	PANTHER	PTHR33429	FAMILY NOT NAMED	coord: 2..145
None	No IPR available	PANTHER	PTHR33429:SF7	SUBFAMILY NOT NAMED	coord: 2..145

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14335	Cla010082	Watermelon (97103) v1	carwmB0232
Carg14335	Csa5G601520	Cucumber (Chinese Long) v2	carcuB0271
Carg14335	MELO3C011993	Melon (DHL92) v3.5.1	carmeB0246
Carg14335	ClCG05G025370	Watermelon (Charleston Gray)	carwcgB0236
Carg14335	CSPI05G22650	Wild cucumber (PI 183967)	carcpiB0275
Carg14335	Cucsa.286090	Cucumber (Gy14) v1	carcgyB0288
Carg14335	CmaCh18G007970	Cucurbita maxima (Rimu)	carcmaB0337
Carg14335	CmaCh04G017350	Cucurbita maxima (Rimu)	carcmaB0339
Carg14335	CmoCh18G008010	Cucurbita moschata (Rifu)	carcmoB0341
Carg14335	Lsi04G005530	Bottle gourd (USVL1VR-Ls)	carlsiB218
Carg14335	Cp4.1LG01g15290	Cucurbita pepo (Zucchini)	carcpeB0344
Carg14335	CsGy5G022170	Cucumber (Gy14) v2	carcgybB0258
Carg14335	MELO3C011993.2	Melon (DHL92) v3.6.1	carmedB0255
Carg14335	CsaV3_5G031540	Cucumber (Chinese Long) v3	carcucB0274
Carg14335	Cla97C05G107530	Watermelon (97103) v2	carwmbB0248
Carg14335	Bhi07G001386	Wax gourd	carwgoB0312

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg14335	Carg14470	Silver-seed gourd	carcarB286

The following block(s) are covering this gene:


Gene	Organism	Block
Carg14335	Watermelon (97103) v2	carwmbB0250
Carg14335	Wax gourd	carwgoB0308
Carg14335	Silver-seed gourd	carcarB283
Carg14335	Silver-seed gourd	carcarB284
Carg14335	Cucurbita maxima (Rimu)	carcmaB0340
Carg14335	Cucurbita moschata (Rifu)	carcmoB0343
Carg14335	Cucurbita moschata (Rifu)	carcmoB0344
Carg14335	Cucurbita pepo (Zucchini)	carcpeB0341
Carg14335	Cucurbita pepo (Zucchini)	carcpeB0343
Carg14335	Bottle gourd (USVL1VR-Ls)	carlsiB219