Cla010082 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla010082
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 32235805 .. 32236356 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGAACTTCAACAGCAACAGCAACCGCAACCGCAACCGCAACCGCAGCAACAACAGCCGAATTTTGTTTATCCCGACACGGCGGCGACAGCCGGCATCCAACCTCCGCCTTCCCACCATTCCAACGGCTCATTTGGGGCAGTTTTTATAGTTCTTGCGGTTATTGTTGTCATATCAGCTCTTGCTTGTTTCCTTGGCCGCCTCTGCAACCGGCGAGTTGAAAACCAGAGGCCGAAGCCGGAGAAAACCCACGGCGGCGCTCGTCCTAGAGGAAAAGAACCCAAATTGCATCCTGATAAAGAAGGAGATATCGAATTTGGATTTGATTTAAAAAACCCAAATGGGAAAGGTAAATTCCCATCTGGTGGAAATGGAGGAAGCAAAGGCAAAGGCAATGGCAATGGCAATGGTAATGGGCCGCATGGGCCTAATGGCCATGGAAATAGCTTCAAACCCTTTGAAAATAGCGGTGAAACGAGAAGCGAAATCAAACATACAGATCATCATGAAGGAGATTTCAATTTCAAAGCTTCAGGGCATCATGTTTGA

mRNA sequence

ATGTCGGAACTTCAACAGCAACAGCAACCGCAACCGCAACCGCAACCGCAGCAACAACAGCCGAATTTTGTTTATCCCGACACGGCGGCGACAGCCGGCATCCAACCTCCGCCTTCCCACCATTCCAACGGCTCATTTGGGGCAGTTTTTATAGTTCTTGCGGTTATTGTTGTCATATCAGCTCTTGCTTGTTTCCTTGGCCGCCTCTGCAACCGGCGAGTTGAAAACCAGAGGCCGAAGCCGGAGAAAACCCACGGCGGCGCTCGTCCTAGAGGAAAAGAACCCAAATTGCATCCTGATAAAGAAGGAGATATCGAATTTGGATTTGATTTAAAAAACCCAAATGGGAAAGGTAAATTCCCATCTGGTGGAAATGGAGGAAGCAAAGGCAAAGGCAATGGCAATGGCAATGGTAATGGGCCGCATGGGCCTAATGGCCATGGAAATAGCTTCAAACCCTTTGAAAATAGCGGTGAAACGAGAAGCGAAATCAAACATACAGATCATCATGAAGGAGATTTCAATTTCAAAGCTTCAGGGCATCATGTTTGA

Coding sequence (CDS)

ATGTCGGAACTTCAACAGCAACAGCAACCGCAACCGCAACCGCAACCGCAGCAACAACAGCCGAATTTTGTTTATCCCGACACGGCGGCGACAGCCGGCATCCAACCTCCGCCTTCCCACCATTCCAACGGCTCATTTGGGGCAGTTTTTATAGTTCTTGCGGTTATTGTTGTCATATCAGCTCTTGCTTGTTTCCTTGGCCGCCTCTGCAACCGGCGAGTTGAAAACCAGAGGCCGAAGCCGGAGAAAACCCACGGCGGCGCTCGTCCTAGAGGAAAAGAACCCAAATTGCATCCTGATAAAGAAGGAGATATCGAATTTGGATTTGATTTAAAAAACCCAAATGGGAAAGGTAAATTCCCATCTGGTGGAAATGGAGGAAGCAAAGGCAAAGGCAATGGCAATGGCAATGGTAATGGGCCGCATGGGCCTAATGGCCATGGAAATAGCTTCAAACCCTTTGAAAATAGCGGTGAAACGAGAAGCGAAATCAAACATACAGATCATCATGAAGGAGATTTCAATTTCAAAGCTTCAGGGCATCATGTTTGA

Protein sequence

MSELQQQQQPQPQPQPQQQQPNFVYPDTAATAGIQPPPSHHSNGSFGAVFIVLAVIVVISALACFLGRLCNRRVENQRPKPEKTHGGARPRGKEPKLHPDKEGDIEFGFDLKNPNGKGKFPSGGNGGSKGKGNGNGNGNGPHGPNGHGNSFKPFENSGETRSEIKHTDHHEGDFNFKASGHHV

Homology

[Close]

BLAST of Cla010082 vs. Swiss-Prot
Match: DGRP_HALAI (Aspartate and glycine-rich protein (Fragment) OS=Haliotis asinina PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.2e-06
Identity = 29/79 (36.71%), Postives = 34/79 (43.04%), Query Frame = 1


Query: 103 GDIEFGFDLKNPNGKGKFPSGGNGGSKGKGNGNGNGNGPHGPNGHGNSFKPFENSGETRS 162
           GD E G    N NG G     GNG   G GNGNGNGNG    NG+GN       +G    
Sbjct: 1   GDGENGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNG 60

Query: 163 EIKHTDHHEGDFNFKASGH 182
                 +  G+ N   +G+
Sbjct: 61  NGNGNGNGNGNGNGNGNGY 79

HSP 2 Score: 48.9 bits (115), Expect = 6.8e-05
Identity = 25/64 (39.06%), Postives = 28/64 (43.75%), Query Frame = 1


Query: 113 NPNGKGKFPSGGNGGSKGKGNGNGNGNGPHGPNGHGNSFKPFENSGETRSEIKHTDHHEG 172
           N NG G     GNG   G GNGNGNGNG    NG+GN       +G         D    
Sbjct: 27  NGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGYFDDDDWD 86

Query: 173 DFNF 177
           DF++
Sbjct: 87  DFDW 90

HSP 3 Score: 32.3 bits (72), Expect = 6.6e+00
Identity = 13/28 (46.43%), Postives = 15/28 (53.57%), Query Frame = 1


Query: 124 GNGGSKGKGNGNGNGNGPHGPNGHGNSF 152
           G+    G GNGNGNGNG    +  G +F
Sbjct: 195 GDDNGNGNGNGNGNGNGDDDDDNGGYAF 222

[Close]

BLAST of Cla010082 vs. TrEMBL
Match: E5GBJ1_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 2.0e-83
Identity = 158/190 (83.16%), Postives = 164/190 (86.32%), Query Frame = 1


Query: 1   MSELQQQQQPQPQPQPQQQQPNFVYPDTAAT-AGIQPPPSHHSNGSFGAVFIVLAVIVVI 60
           MSELQQQQ+   Q Q QQQQP +VYPDTAAT AG Q PPSHHSNGSFGAVFIVLAVIVVI
Sbjct: 1   MSELQQQQEQPQQQQQQQQQPAYVYPDTAATSAGSQVPPSHHSNGSFGAVFIVLAVIVVI 60

Query: 61  SALACFLGRLCNRRVEN-QRPKPEKTHGGARP-RGKEPKLHPDKEGDIEFGFDLKNPNGK 120
           SALACFLGRLCNRRVEN QRPKPEK+H GARP RGKEPKLHPDKEGDIEFGFDL+NP+GK
Sbjct: 61  SALACFLGRLCNRRVENHQRPKPEKSHAGARPTRGKEPKLHPDKEGDIEFGFDLRNPSGK 120

Query: 121 GKFPSGGNGGSKGKG--NGNGNGNGP---HGPNGHGNSFKPFENSGETRSEIKHTDHHEG 180
           GKFP GGNG   G G   G GNGNGP   +GPNGHGNSFKPFEN GETRSEIKHTDHHEG
Sbjct: 121 GKFPPGGNGNGNGNGGSKGKGNGNGPIGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEG 180

Query: 181 DFNFKASGHH 183
           DFNFKA GHH
Sbjct: 181 DFNFKAGGHH 190

[Close]

BLAST of Cla010082 vs. TrEMBL
Match: A0A0A0KTP5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G601520 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.8e-82
Identity = 161/192 (83.85%), Postives = 167/192 (86.98%), Query Frame = 1


Query: 1   MSELQQQQQPQPQPQPQQQQPNFVYPDTAAT-AGIQPPPSHHSNGSFGAVFIVLAVIVVI 60
           MSELQQQQ   PQ Q QQQQP +VYPDTAAT AG Q PP HHSNGSFGAVFIVLAVIVVI
Sbjct: 1   MSELQQQQ---PQRQQQQQQPAYVYPDTAATSAGSQVPPPHHSNGSFGAVFIVLAVIVVI 60

Query: 61  SALACFLGRLCNRRVEN-QRPKPEKTHGGARP-RGKEPKLHPDKEGDIEFGFDLKNPNGK 120
           SALACFLGRLCNRRVEN QRPKPEK+H GARP RGKEPKLHPDKEGDIEFGFDL+NP+GK
Sbjct: 61  SALACFLGRLCNRRVENHQRPKPEKSHSGARPTRGKEPKLHPDKEGDIEFGFDLRNPSGK 120

Query: 121 GKFPSG-------GNGGSKGKGNGNGNGNGPHGPNGHGNSFKPFENSGETRSEIKHTDHH 180
           GKFPSG       GNGGSKGKGNGNG   G +GPNGHGNSFKPFEN GETRSEIKHTDHH
Sbjct: 121 GKFPSGGNGSTGNGNGGSKGKGNGNG-PIGLNGPNGHGNSFKPFENGGETRSEIKHTDHH 180

Query: 181 EGDFNFKASGHH 183
           EGDFNFKA+GHH
Sbjct: 181 EGDFNFKAAGHH 188

[Close]

BLAST of Cla010082 vs. NCBI nr
Match: gi|659090788|ref|XP_008446202.1| (PREDICTED: putative mediator of RNA polymerase II transcription subunit 19 [Cucumis melo])

HSP 1 Score: 316.6 bits (810), Expect = 2.8e-83
Identity = 158/190 (83.16%), Postives = 164/190 (86.32%), Query Frame = 1


Query: 1   MSELQQQQQPQPQPQPQQQQPNFVYPDTAAT-AGIQPPPSHHSNGSFGAVFIVLAVIVVI 60
           MSELQQQQ+   Q Q QQQQP +VYPDTAAT AG Q PPSHHSNGSFGAVFIVLAVIVVI
Sbjct: 1   MSELQQQQEQPQQQQQQQQQPAYVYPDTAATSAGSQVPPSHHSNGSFGAVFIVLAVIVVI 60

Query: 61  SALACFLGRLCNRRVEN-QRPKPEKTHGGARP-RGKEPKLHPDKEGDIEFGFDLKNPNGK 120
           SALACFLGRLCNRRVEN QRPKPEK+H GARP RGKEPKLHPDKEGDIEFGFDL+NP+GK
Sbjct: 61  SALACFLGRLCNRRVENHQRPKPEKSHAGARPTRGKEPKLHPDKEGDIEFGFDLRNPSGK 120

Query: 121 GKFPSGGNGGSKGKG--NGNGNGNGP---HGPNGHGNSFKPFENSGETRSEIKHTDHHEG 180
           GKFP GGNG   G G   G GNGNGP   +GPNGHGNSFKPFEN GETRSEIKHTDHHEG
Sbjct: 121 GKFPPGGNGNGNGNGGSKGKGNGNGPIGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEG 180

Query: 181 DFNFKASGHH 183
           DFNFKA GHH
Sbjct: 181 DFNFKAGGHH 190

[Close]

BLAST of Cla010082 vs. NCBI nr
Match: gi|917168837|ref|WP_051775549.1| (hypothetical protein [Paenibacillus sp. MSt1])

HSP 1 Score: 60.1 bits (144), Expect = 4.7e-06
Identity = 35/98 (35.71%), Postives = 44/98 (44.90%), Query Frame = 1


Query: 68  RLCNRRVENQRPKPEKTHGGARPRGKEPKLHPDKEGDIEFGFDLKNPNGKGKFPSGGNGG 127
           RL   + E ++ + EK     + + K+ K   DKE     G    N NG G     GNG 
Sbjct: 118 RLEKEKQEKEKQEKEKQEKEKQEKEKQEKEKQDKENGKGNGKGNGNGNGNGNGNGNGNGN 177

Query: 128 SKGKGNGNGNGNGPHGPNGHGNSFKPFENSGETRSEIK 166
             G GNGNGNGNG    NG+GN       +G    E K
Sbjct: 178 GNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNKDKEYK 215

[Close]

BLAST of Cla010082 vs. NCBI nr
Match: gi|917168837|ref|WP_051775549.1| (hypothetical protein [Paenibacillus sp. MSt1])

HSP 1 Score: 59.3 bits (142), Expect = 8.1e-06
Identity = 32/82 (39.02%), Postives = 42/82 (51.22%), Query Frame = 1


Query: 68  RLCNRRVENQRPKPEKTHGGARPRGKEPKLHPDKEGDIEFGFDLKNPNGKGKFPSGGNGG 127
           RL   + E +R + EK     + + K+ K   +KE   +   D +N  G GK    GNG 
Sbjct: 108 RLEKEKQEKERLEKEKQEKEKQEKEKQEKEKQEKEKQEKEKQDKENGKGNGKGNGNGNGN 167

Query: 128 SKGKGNGNGNGNGPHGPNGHGN 150
             G GNGNGNGNG    NG+GN
Sbjct: 168 GNGNGNGNGNGNGNGNGNGNGN 189

HSP 2 Score: 54.3 bits (129), Expect = 2.6e-04
Identity = 36/110 (32.73%), Postives = 47/110 (42.73%), Query Frame = 1


Query: 68  RLCNRRVENQRPKPEKTHGGARPRGKEPKLHPDKEGDIEFGFDLKNPNGKGKFPSGGNGG 127
           RL   + E ++ + EK     + + K+ K   DKE     G    N NG G     GNG 
Sbjct: 118 RLEKEKQEKEKQEKEKQEKEKQEKEKQEKEKQDKENGKGNGKGNGNGNGNGNGNGNGNGN 177

Query: 128 S--------KGKGNGNGNGNGPHGPNGHGNSFKPFENSGETRSEIKHTDH 170
                     G GNGNGNGNG    NG+GN  K  E    T++  +   H
Sbjct: 178 GNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNKDKEYKEITKNATQQLIH 227

HSP 3 Score: 44.7 bits (104), Expect = 2.1e-01
Identity = 33/114 (28.95%), Postives = 46/114 (40.35%), Query Frame = 1


Query: 68  RLCNRRVENQRPKPEKTHGGARPRGKEPKLHPDKEGDIEFGFDLKNPNGKGKFPSGGNGG 127
           RL   + E ++ + EK     + + K+ K   DKE            NGKG         
Sbjct: 118 RLEKEKQEKEKQEKEKQEKEKQEKEKQEKEKQDKE------------NGKG--------- 177

Query: 128 SKGKGNGNGNGNGPHGPNGHGNSFKPFENSGETRSEIKHTDHHEGDFNFKASGH 182
             GKGNGNGNGNG    NG+GN       +G          +  G+ N   +G+
Sbjct: 178 -NGKGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGN 209

HSP 4 Score: 30.4 bits (67), Expect = 4.0e+03
Identity = 26/109 (23.85%), Postives = 41/109 (37.61%), Query Frame = 1


Query: 73  RVENQRPKPEKTHGGARPRGKEPKLHPDKEGDIEFGFDLKNPNGKGKFPSGGNGGSKGKG 132
           R+E ++ + E+     + + K+ K   +KE         K    K K         K  G
Sbjct: 108 RLEKEKQEKERLEKEKQEKEKQEKEKQEKEKQE------KEKQEKEK-------QDKENG 167

Query: 133 NGNGNGNGPHGPNGHGNSFKPFENSGETRSEIKHTDHHEGDFNFKASGH 182
            GNG GNG    NG+GN       +G          +  G+ N   +G+
Sbjct: 168 KGNGKGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGN 203

The following BLAST results are available for this feature:

BLAST of Cla010082 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DGRP_HALAI	6.2e-06	36.71	Aspartate and glycine-rich protein (Fragment) OS=Haliotis asinina PE=1 SV=1	[more]

BLAST of Cla010082 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBJ1_CUCME	2.0e-83	83.16	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KTP5_CUCSA	2.8e-82	83.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G601520 PE=4 SV=1	[more]

BLAST of Cla010082 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090788\|ref\|XP_008446202.1\|	2.8e-83	83.16	PREDICTED: putative mediator of RNA polymerase II transcription subunit 19 [Cucu...	[more]
gi\|917168837\|ref\|WP_051775549.1\|	4.7e-06	35.71	hypothetical protein [Paenibacillus sp. MSt1]	[more]
gi\|917168837\|ref\|WP_051775549.1\|	8.1e-06	39.02	hypothetical protein [Paenibacillus sp. MSt1]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016301	kinase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU52270	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla010082	Cla010082.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU52270	WMU52270	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33429	FAMILY NOT NAMED	coord: 1..118 score: 2.9
None	No IPR available	PANTHER	PTHR33429:SF7	SUBFAMILY NOT NAMED	coord: 1..118 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla010082	Cla97C05G107530	Watermelon (97103) v2	wmwmbB207
Cla010082	Csa5G601520	Cucumber (Chinese Long) v2	cuwmB401
Cla010082	MELO3C011993	Melon (DHL92) v3.5.1	mewmB061
Cla010082	ClCG05G025370	Watermelon (Charleston Gray)	wcgwmB285
Cla010082	CSPI05G22650	Wild cucumber (PI 183967)	cpiwmB410
Cla010082	Cucsa.286090	Cucumber (Gy14) v1	cgywmB524
Cla010082	CmaCh18G007970	Cucurbita maxima (Rimu)	cmawmB375
Cla010082	CmaCh04G017350	Cucurbita maxima (Rimu)	cmawmB700
Cla010082	CmoCh18G008010	Cucurbita moschata (Rifu)	cmowmB367
Cla010082	Lsi04G005530	Bottle gourd (USVL1VR-Ls)	lsiwmB312
Cla010082	Cp4.1LG01g15290	Cucurbita pepo (Zucchini)	cpewmB428
Cla010082	MELO3C011993.2	Melon (DHL92) v3.6.1	medwmB061
Cla010082	Carg14470	Silver-seed gourd	carwmB0721
Cla010082	Carg14335	Silver-seed gourd	carwmB0232
Cla010082	Bhi07G001386	Wax gourd	wgowmB550

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla010082	Wax gourd	wgowmB330
Cla010082	Wax gourd	wgowmB494
Cla010082	Watermelon (97103) v1	wmwmB047
Cla010082	Watermelon (97103) v1	wmwmB120
Cla010082	Watermelon (97103) v1	wmwmB136
Cla010082	Cucumber (Gy14) v1	cgywmB126
Cla010082	Cucumber (Gy14) v1	cgywmB614
Cla010082	Cucurbita maxima (Rimu)	cmawmB160
Cla010082	Cucurbita maxima (Rimu)	cmawmB374
Cla010082	Cucurbita maxima (Rimu)	cmawmB755
Cla010082	Cucurbita moschata (Rifu)	cmowmB694
Cla010082	Cucurbita moschata (Rifu)	cmowmB750
Cla010082	Melon (DHL92) v3.5.1	mewmB155
Cla010082	Melon (DHL92) v3.5.1	mewmB275
Cla010082	Melon (DHL92) v3.5.1	mewmB376
Cla010082	Watermelon (Charleston Gray)	wcgwmB070
Cla010082	Watermelon (Charleston Gray)	wcgwmB132
Cla010082	Watermelon (Charleston Gray)	wcgwmB416
Cla010082	Cucumber (Chinese Long) v2	cuwmB037
Cla010082	Cucumber (Chinese Long) v2	cuwmB242
Cla010082	Cucurbita pepo (Zucchini)	cpewmB028
Cla010082	Cucurbita pepo (Zucchini)	cpewmB105
Cla010082	Cucurbita pepo (Zucchini)	cpewmB796
Cla010082	Bottle gourd (USVL1VR-Ls)	lsiwmB195
Cla010082	Bottle gourd (USVL1VR-Ls)	lsiwmB259
Cla010082	Bottle gourd (USVL1VR-Ls)	lsiwmB483
Cla010082	Cucumber (Gy14) v2	cgybwmB035
Cla010082	Cucumber (Gy14) v2	cgybwmB226
Cla010082	Cucumber (Gy14) v2	cgybwmB377
Cla010082	Melon (DHL92) v3.6.1	medwmB150
Cla010082	Melon (DHL92) v3.6.1	medwmB371
Cla010082	Silver-seed gourd	carwmB0501
Cla010082	Silver-seed gourd	carwmB0623
Cla010082	Cucumber (Chinese Long) v3	cucwmB041
Cla010082	Cucumber (Chinese Long) v3	cucwmB044
Cla010082	Cucumber (Chinese Long) v3	cucwmB248
Cla010082	Cucumber (Chinese Long) v3	cucwmB428
Cla010082	Watermelon (97103) v2	wmwmbB190
Cla010082	Watermelon (97103) v2	wmwmbB200
Cla010082	Watermelon (97103) v2	wmwmbB225