Lsi04G000310 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G000310
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cytochrome C oxidase assembly protein PET191
Location	chr04 : 463388 .. 465670 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTGGTCAAGTGTCTTAGCGAATCTGATTGTGTAAAGGTCTTATATAATCATGTTCTCATTGTATATGACTGTCTTTATGTGTGTGGGTATGCAGACATGTATCTTGTGTATCAGTACTTGGATAATTTTATTATAGAATTGGCATCTGTTTTTCTGAAATGCATTTTTTACTCTTGGCAATCATTAACGGGTGTATTAGAACAATCTATCATGAAGAATGTGAACAAGGACGTATAGGGTAGTTGCTTTAATTCAACATGGTTTTCAGTCTCTTGTTGTTGCAATTTCAGGTTCAGAACAGAACTTACAGGGAATGTGCTGGAGAGAAGAGTCCTTGTATACCTAGCGAATGTGTGGGATTAAGGGAAACATATTTCAATTGTAAAAGAGGCCAGGCAAGTTTTCATTAACTCCTTCTCCAGTGTCCTGCAGTCATTAATTCTTTGTTGATTAGATCCTAATTGGGCGACTGCTACTTCAAAGTATTCTAAAATACACCTCATGATACAGCAACATGGCAACTTGTAGTTTAAAATTATACGTGGTATTATATGATTGCATAGATTGATGTTAAGATAGTGGACGAAAGATGATTAGTCACTTCTTTATCTTCTAATCTCAATGGGAAGTAGAGAACGTCTGTGGGTGGAGATAGCCAAAGGGACATCCAAAGTAATGTTAAACATGAATGTTGGAAAATTTTCGTGGAAAGAAATGCTAGGTTTTTTTAAGACAGTGAGATACATGTTAGTGATCAAATTAGAAAATGAGGGAAGATACGTCTGTGAGATTTACTATAGTTGAGTTGAGTGTAACCAAAAGTCAGTAAATGAATTATGAAATGAGAACTCGAGAAGCTGGAATGTGCTGACTAGAAGGAACTTGACAGCACTTGAATTTAGTGAACTTAATGACCTGCTGGATTTTCTAGAAAATGAGTGAATTGGAGTGGCGTGGATTTATGAGAGATTGTAGACTTTCCCTTTTTGGGTTGAACATTTTTATTATAACCAAATGGATGCAATGGTGGTCTAGAAAGAAGCTCTATAAGGAAGTGTGAATAGAAAAATATCCCAAAAAAGTCTGCCCAGCTTGTTCTCGTGGACTTGACTTCTGAAAGATGAAGGCTCGATGTCCTTCAATGGTTTTGTTATAAAACTTTTGTACCCCTCAGCGTGCCTTTATGTTTGTAAGTAGGTTTCAGATTTTCAGTTTTTCTCACATCGTACGTTGGAAGAGAATATATTTCATCTTGTTTATGGATATCCCTTAAGGGGCAAAACAAACAAACGTTAGTGTAGAGTCTCTGGTTGAAAGAAACGACGGAGTTAAGATTGGATAAATTTTGAGTTTGCTAAATGTTACTGTTCTTACTAGATTTCTGTAGATAATGCTCCCAATACCTGCAATTTGAGTCTAATTCATACTTCTAGAAGCGGTGCTTTTGAAATTCCATTAGGGACTGAGACTAACTGGCTGGCTTTATTTGGTATATCCTTAAAGATAGTTTTTACCATATTAATGAAAAGTGCTTCCTGTTTCTAAACGAAAAGCAATTGAATATCAGTGGCATTCTATGTTAAATTTGTTTTTCCGAAGTCGTCAATTTTGTTAGATGTTACAAAGTTGATGTAATGCATCTCACAACACTCAGTGCATCTCAAAATTCCAGGTTGACATGAGGGCAAGGATTCGAGGGAACAAAGGTTATTGAATGAGGGGTGGAGTTGAGCAATTCCTTGAGTAGAATTTTGGAACTTTGAATGCCTGGAAGTTTGTCTGCAGTGACCTGTAAAATCTTGCCCTTCTGCATATATTCAGTAACATTTGACTTTCGATTTTTTCATCGCTGAAGAGTTTTTCCGTCAATCTGCTTACAGAAGCCAGTAGCCAAATATTTAGTCCTGAGTTAATAGTGATTGTGTTTTCTTATGTTTTGGATTCTTACATTAACTTTGCCATGGCTGTTCAATATTGAAGGTTTTTTTTACCATTACACGAGTACATACACTTCTAGAAGAAGGAAGGGGTATACTTTCACTTGATTGTTCAGTAACTTGTATTCTTCTCATGTTTACCTTCTTATAGGAAGATGTTTGTGTTGGTATCCAATTCGAGCATGGCTTAACTGAGTTTTCTTGTACTTATAAGCAAGTTTATATCGTTCTTTTAGGCTATGTTCATGGTTAAGTTGGTCTAGCTATTAAAGGTTTTACTTGAAATGATTTTCTAAAGACATTGGAAATTTTAGGATATGCTCCATACACTGCAGAATGA

mRNA sequence

ATGGAACTGGTTCAGAACAGAACTTACAGGGAATGTGCTGGAGAGAAGAGTCCTTGTATACCTAGCGAATGTGTGGGATTAAGGGAAACATATTTCAATTGTAAAAGAGGCCAGGCAAATAATGCTCCCAATACCTGCAATTTGAGTCTAATTCATACTTCTAGAAGCGGTGCTTTTGAAATTCCATTAGGGACTGAGACTAACTGGCTGGCTTTATTTGGATATGCTCCATACACTGCAGAATGA

Coding sequence (CDS)

ATGGAACTGGTTCAGAACAGAACTTACAGGGAATGTGCTGGAGAGAAGAGTCCTTGTATACCTAGCGAATGTGTGGGATTAAGGGAAACATATTTCAATTGTAAAAGAGGCCAGGCAAATAATGCTCCCAATACCTGCAATTTGAGTCTAATTCATACTTCTAGAAGCGGTGCTTTTGAAATTCCATTAGGGACTGAGACTAACTGGCTGGCTTTATTTGGATATGCTCCATACACTGCAGAATGA

Protein sequence

MELVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQANNAPNTCNLSLIHTSRSGAFEIPLGTETNWLALFGYAPYTAE

Homology

[Close]

BLAST of Lsi04G000310 vs. TrEMBL
Match: E5GCJ7_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1


Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 39
          VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 24 VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]

BLAST of Lsi04G000310 vs. TrEMBL
Match: A0A0A0KRS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623760 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-13
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1


Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAN 41
          VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ +
Sbjct: 24 VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVD 60

[Close]

BLAST of Lsi04G000310 vs. TrEMBL
Match: A0A151S961_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_026786 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.8e-12
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1


Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAN 41
          V+ R+YREC GEKSPCIPSECVGLRETYFNCKRGQA+
Sbjct: 24 VEKRSYRECVGEKSPCIPSECVGLRETYFNCKRGQAS 60

[Close]

BLAST of Lsi04G000310 vs. TrEMBL
Match: V4U5G9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017354mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.8e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1


Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQA 40
          V+ R++RECAGEKSPCIPSECVGLRETYFNCKRGQA
Sbjct: 24 VEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQA 59

[Close]

BLAST of Lsi04G000310 vs. TrEMBL
Match: A0A067FDM3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034876mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.8e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1


Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQA 40
          V+ R++RECAGEKSPCIPSECVGLRETYFNCKRGQA
Sbjct: 24 VEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQA 59

[Close]

BLAST of Lsi04G000310 vs. TAIR10
Match: AT1G10865.1 (AT1G10865.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 70.5 bits (171), Expect = 5.5e-13
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1


Query: 5  QNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAN 41
          + R+ R+C GEKSPCIPSECVGLRETYFNCKRGQ +
Sbjct: 25 EKRSIRDCTGEKSPCIPSECVGLRETYFNCKRGQVD 60

[Close]

BLAST of Lsi04G000310 vs. NCBI nr
Match: gi|659092196|ref|XP_008446948.1| (PREDICTED: cytochrome c oxidase assembly factor 5 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 3.0e-13
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1


Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAN 41
          VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ +
Sbjct: 24 VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVD 60

[Close]

BLAST of Lsi04G000310 vs. NCBI nr
Match: gi|307136386|gb|ADN34196.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 82.8 bits (203), Expect = 3.0e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1


Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 39
          VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 24 VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]

BLAST of Lsi04G000310 vs. NCBI nr
Match: gi|1012340134|gb|KYP51355.1| (hypothetical protein KK1_026786 [Cajanus cajan])

HSP 1 Score: 77.8 bits (190), Expect = 9.7e-12
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1


Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAN 41
          V+ R+YREC GEKSPCIPSECVGLRETYFNCKRGQA+
Sbjct: 24 VEKRSYRECVGEKSPCIPSECVGLRETYFNCKRGQAS 60

[Close]

BLAST of Lsi04G000310 vs. NCBI nr
Match: gi|802768214|ref|XP_012090139.1| (PREDICTED: mitochondrial protein pet191 homolog [Jatropha curcas])

HSP 1 Score: 77.8 bits (190), Expect = 9.7e-12
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1


Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 39
          V+ R+YRECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 24 VEKRSYRECAGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]

BLAST of Lsi04G000310 vs. NCBI nr
Match: gi|567907563|ref|XP_006446095.1| (hypothetical protein CICLE_v10017354mg [Citrus clementina])

HSP 1 Score: 77.8 bits (190), Expect = 9.7e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1


Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQA 40
          V+ R++RECAGEKSPCIPSECVGLRETYFNCKRGQA
Sbjct: 24 VEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQA 59

The following BLAST results are available for this feature:

BLAST of Lsi04G000310 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G000310 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCJ7_CUCME	2.1e-13	100.00	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KRS4_CUCSA	2.1e-13	94.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623760 PE=4 SV=1	[more]
A0A151S961_CAJCA	6.8e-12	86.49	Uncharacterized protein OS=Cajanus cajan GN=KK1_026786 PE=4 SV=1	[more]
V4U5G9_9ROSI	6.8e-12	88.89	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017354mg PE=4 SV=1	[more]
A0A067FDM3_CITSI	6.8e-12	88.89	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034876mg PE=4 SV=1	[more]

BLAST of Lsi04G000310 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10865.1	5.5e-13	77.78	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Lsi04G000310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092196\|ref\|XP_008446948.1\|	3.0e-13	94.59	PREDICTED: cytochrome c oxidase assembly factor 5 [Cucumis melo]	[more]
gi\|307136386\|gb\|ADN34196.1\|	3.0e-13	100.00	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|1012340134\|gb\|KYP51355.1\|	9.7e-12	86.49	hypothetical protein KK1_026786 [Cajanus cajan]	[more]
gi\|802768214\|ref\|XP_012090139.1\|	9.7e-12	91.43	PREDICTED: mitochondrial protein pet191 homolog [Jatropha curcas]	[more]
gi\|567907563\|ref\|XP_006446095.1\|	9.7e-12	88.89	hypothetical protein CICLE_v10017354mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018793	Cyt_c_oxidase_assmbl_Pet191

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0033617	mitochondrial respiratory chain complex IV assembly
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G000310.1	Lsi04G000310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018793	Cytochrome c oxidase assembly protein PET191	PFAM	PF10203	Pet191_N	coord: 5..41 score: 1.
None	No IPR available	PANTHER	PTHR28627	FAMILY NOT NAMED	coord: 3..41 score: 9.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G000310	Csa5G623760	Cucumber (Chinese Long) v2	culsiB368
Lsi04G000310	Cucsa.308010	Cucumber (Gy14) v1	cgylsiB497
Lsi04G000310	CmaCh04G013340	Cucurbita maxima (Rimu)	cmalsiB669
Lsi04G000310	CmoCh04G014080	Cucurbita moschata (Rifu)	cmolsiB660
Lsi04G000310	MELO3C012466	Melon (DHL92) v3.5.1	lsimeB281
Lsi04G000310	MELO3C012466.2	Melon (DHL92) v3.6.1	lsimedB297
Lsi04G000310	Cla97C05G109030	Watermelon (97103) v2	lsiwmbB292
Lsi04G000310	Cp4.1LG01g15060	Cucurbita pepo (Zucchini)	cpelsiB352
Lsi04G000310	CsGy5G026950	Cucumber (Gy14) v2	cgyblsiB337
Lsi04G000310	Carg01989	Silver-seed gourd	carlsiB767
Lsi04G000310	CsaV3_5G036700	Cucumber (Chinese Long) v3	cuclsiB393

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G000310	Silver-seed gourd	carlsiB664
Lsi04G000310	Cucurbita maxima (Rimu)	cmalsiB379
Lsi04G000310	Cucurbita moschata (Rifu)	cmolsiB364
Lsi04G000310	Cucurbita pepo (Zucchini)	cpelsiB032
Lsi04G000310	Wild cucumber (PI 183967)	cpilsiB372
Lsi04G000310	Watermelon (Charleston Gray)	lsiwcgB291
Lsi04G000310	Watermelon (97103) v1	lsiwmB320