Cla97C05G109030 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G109030
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Cytochrome C oxidase assembly protein PET191
Location	Cla97Chr05 : 35554214 .. 35555288 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCTTTCTTTACTTCTTTCGTCTTCTTCTCCGTCGGGCGCTCACAGCAATCGGTCGTCGCTGTTGCCTTTCACCAGGTAAATTCCTCTGTCACCGTTCGATTCACTTCTTCGTGTTCTTTGCTGTTGTTGCTTCTGTTTCCTTTTTATTCTGCAACTATATCTTCACTCTCTCCATTCCACAGGCTCTCTGTCATGTACCTTGTTTCTGTTCTATTATGTTTACTCCCGTTCTCATCCTTCTTATTTAGCGTATATTCATATTTTATTTTGTATTCAGCTCAATATTCTGCGTCCATGGCTTCTAATTGGAACCCACCTCCCGTTTCTCCGTTTGATGCCATACCTTACCGATATCCCAAGAATTAATCGTTCTATCACATTATTTCGTCGATGTTGATTGATTTATTACCTTACTGTTAGTTATCTCAATAATACAATGCGGTTTTTGCTCTATCTAATATGTATTTGTTGTGTTATTTCCTCACTGACACTGAGTGAGAATTGAGCATACTATTTGGTTTCCAGTTAAGTCCTGCGAGTAGAAATCAGCTCGGTAGATAGTTATTAACAAGACGACTACTAGGGGGAGAAGAGGATTCACGAAGCGAATAATTGTGAAGGAAGATAATTGTGATTCGTCAAGCGAAGATTCAAGACATAACAGGAATCTTTGAGAAGGGTAAAATTAAGGGGAAGGATGTCGAAGTCTTGCAAAGGTTTGGCGATGGAATTGGTCAAGTGTCTCAGCGAATCTGATTGTGTAAAGGTCTTATATAATCATGTTCTCATTGTATATGACTCTCTTTATGTTTGTCAGTATGCAGACATGTATCTTGTGTATCATTAATGGGTGTATTAGAACACCCTATCATGAAGAATGTAAACAAGTACATATAGGGTAGTTGCTTTAATTCAACATGGTTTTCAGTCTTTTCTTGTTGCAATTTCAGGTTCAGAACCGAACTTACAGGGAATGTGCTGGAGAGAAGAGTCCTTGCATACCTAGTGAATGTGTGGGATTAAGAGAAACATATTTCAACTGTAAAAGAGGCCAGGCAAGTTTTCATTGA

mRNA sequence

ATGGCCCTTTCTTTACTTCTTTCGTCTTCTTCTCCGTCGGGCGCTCACAGCAATCGGTCGTCGCTGTTGCCTTTCACCAGGGTAAAATTAAGGGGAAGGATGTCGAAGTCTTGCAAAGGTTTGGCGATGGAATTGGTCAAGTGTCTCAGCGAATCTGATTGTGTAAAGGTTCAGAACCGAACTTACAGGGAATGTGCTGGAGAGAAGAGTCCTTGCATACCTAGTGAATGTGTGGGATTAAGAGAAACATATTTCAACTGTAAAAGAGGCCAGGCAAGTTTTCATTGA

Coding sequence (CDS)

ATGGCCCTTTCTTTACTTCTTTCGTCTTCTTCTCCGTCGGGCGCTCACAGCAATCGGTCGTCGCTGTTGCCTTTCACCAGGGTAAAATTAAGGGGAAGGATGTCGAAGTCTTGCAAAGGTTTGGCGATGGAATTGGTCAAGTGTCTCAGCGAATCTGATTGTGTAAAGGTTCAGAACCGAACTTACAGGGAATGTGCTGGAGAGAAGAGTCCTTGCATACCTAGTGAATGTGTGGGATTAAGAGAAACATATTTCAACTGTAAAAGAGGCCAGGCAAGTTTTCATTGA

Protein sequence

MALSLLLSSSSPSGAHSNRSSLLPFTRVKLRGRMSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQASFH

Homology

[Close]

BLAST of Cla97C05G109030 vs. NCBI nr
Match: ADN34196.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAS 93
          MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ  
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQII 60

Query: 94 FH 96
           H
Sbjct: 61 CH 62

[Close]

BLAST of Cla97C05G109030 vs. NCBI nr
Match: XP_008446948.1 (PREDICTED: cytochrome c oxidase assembly factor 5 [Cucumis melo] >XP_011655913.1 PREDICTED: cytochrome c oxidase assembly factor 5 [Cucumis sativus] >XP_022139307.1 cytochrome c oxidase assembly factor 5 [Momordica charantia] >XP_022139308.1 cytochrome c oxidase assembly factor 5 [Momordica charantia] >KGN52313.1 hypothetical protein Csa_5G623760 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 3.2e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 92
          MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]

BLAST of Cla97C05G109030 vs. NCBI nr
Match: XP_022956695.1 (cytochrome c oxidase assembly factor 5 [Cucurbita moschata] >XP_022975987.1 cytochrome c oxidase assembly factor 5 [Cucurbita maxima] >XP_023534123.1 cytochrome c oxidase assembly factor 5 [Cucurbita pepo subsp. pepo] >XP_023534138.1 cytochrome c oxidase assembly factor 5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.9 bits (315), Expect = 7.1e-26
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 92
          MSKSCKGLAMELVKCLSESDCVKVQNRTY+ECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYKECAGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]

BLAST of Cla97C05G109030 vs. NCBI nr
Match: KYP51355.1 (hypothetical protein KK1_026786 [Cajanus cajan])

HSP 1 Score: 124.0 bits (310), Expect = 2.7e-25
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAS 93
          MSKSCKGLAMELVKCLSESDCVKV+ R+YREC GEKSPCIPSECVGLRETYFNCKRGQAS
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVEKRSYRECVGEKSPCIPSECVGLRETYFNCKRGQAS 60

[Close]

BLAST of Cla97C05G109030 vs. NCBI nr
Match: ESR59335.1 (hypothetical protein CICLE_v10017354mg [Citrus clementina] >KDO61301.1 hypothetical protein CISIN_1g034876mg [Citrus sinensis] >KDO61302.1 hypothetical protein CISIN_1g034876mg [Citrus sinensis])

HSP 1 Score: 123.2 bits (308), Expect = 4.6e-25
Identity = 58/67 (86.57%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQA- 93
          MSKSCKGLAMELVKCLSESDCVKV+ R++RECAGEKSPCIPSECVGLRETYFNCKRGQA 
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQAC 60

Query: 94 ----SFH 96
              SFH
Sbjct: 61 SLFSSFH 67

[Close]

BLAST of Cla97C05G109030 vs. TrEMBL
Match: tr|E5GCJ7|E5GCJ7_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 7.2e-27
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAS 93
          MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ  
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQII 60

Query: 94 FH 96
           H
Sbjct: 61 CH 62

[Close]

BLAST of Cla97C05G109030 vs. TrEMBL
Match: tr|A0A1S3BGA9|A0A1S3BGA9_CUCME (cytochrome c oxidase assembly factor 5 OS=Cucumis melo OX=3656 GN=LOC103489506 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.1e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 92
          MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]

BLAST of Cla97C05G109030 vs. TrEMBL
Match: tr|A0A0A0KRS4|A0A0A0KRS4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623760 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.1e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 92
          MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]

BLAST of Cla97C05G109030 vs. TrEMBL
Match: tr|A0A151S961|A0A151S961_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_026786 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.8e-25
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAS 93
          MSKSCKGLAMELVKCLSESDCVKV+ R+YREC GEKSPCIPSECVGLRETYFNCKRGQAS
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVEKRSYRECVGEKSPCIPSECVGLRETYFNCKRGQAS 60

[Close]

BLAST of Cla97C05G109030 vs. TrEMBL
Match: tr|K7LWH3|K7LWH3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100807565 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.0e-25
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAS 93
          MSKSCKGLAMELVKCLSESDCVKV+ R+Y+EC GEKSPCIPSECVGLRETYFNCKRGQAS
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVEKRSYKECVGEKSPCIPSECVGLRETYFNCKRGQAS 60

Query: 94 FH 96
           +
Sbjct: 61 VY 62

[Close]

BLAST of Cla97C05G109030 vs. Swiss-Prot
Match: sp|O42921|PT191_SCHPO (Mitochondrial protein pet191 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC16A3.16 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 9.5e-06
Identity = 24/56 (42.86%), Postives = 32/56 (57.14%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKR 90
          M +SCK +  +L  CL  SDC+ V+ ++ REC   K   +P EC  L E Y  CKR
Sbjct: 1  MGRSCKVIREDLANCLLHSDCMFVKKKSARECLKNKDE-LPEECKNLIEAYGECKR 55

[Close]

BLAST of Cla97C05G109030 vs. TAIR10
Match: AT1G10865.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-23
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 92
          M+KSCKGLA ELVKCLSES CVK + R+ R+C GEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 1  MAKSCKGLAEELVKCLSESICVKGEKRSIRDCTGEKSPCIPSECVGLRETYFNCKRGQ 58

The following BLAST results are available for this feature:

BLAST of Cla97C05G109030 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34196.1	1.1e-26	95.16	hypothetical protein [Cucumis melo subsp. melo]	[more]
XP_008446948.1	3.2e-26	100.00	PREDICTED: cytochrome c oxidase assembly factor 5 [Cucumis melo] >XP_011655913.1...	[more]
XP_022956695.1	7.1e-26	98.28	cytochrome c oxidase assembly factor 5 [Cucurbita moschata] >XP_022975987.1 cyto...	[more]
KYP51355.1	2.7e-25	93.33	hypothetical protein KK1_026786 [Cajanus cajan]	[more]
ESR59335.1	4.6e-25	86.57	hypothetical protein CICLE_v10017354mg [Citrus clementina] >KDO61301.1 hypotheti...	[more]

BLAST of Cla97C05G109030 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GCJ7\|E5GCJ7_CUCME	7.2e-27	95.16	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S3BGA9\|A0A1S3BGA9_CUCME	2.1e-26	100.00	cytochrome c oxidase assembly factor 5 OS=Cucumis melo OX=3656 GN=LOC103489506 P...	[more]
tr\|A0A0A0KRS4\|A0A0A0KRS4_CUCSA	2.1e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623760 PE=4 SV=1	[more]
tr\|A0A151S961\|A0A151S961_CAJCA	1.8e-25	93.33	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_026786 PE=4 SV=1	[more]
tr\|K7LWH3\|K7LWH3_SOYBN	3.0e-25	88.71	Uncharacterized protein OS=Glycine max OX=3847 GN=100807565 PE=4 SV=1	[more]

BLAST of Cla97C05G109030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O42921\|PT191_SCHPO	9.5e-06	42.86	Mitochondrial protein pet191 homolog OS=Schizosaccharomyces pombe (strain 972 / ...	[more]

BLAST of Cla97C05G109030 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10865.1	1.1e-23	82.76	FUNCTIONS IN: molecular_function unknown	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018793	Cyt_c_oxidase_assmbl_Pet191

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0033617	mitochondrial respiratory chain complex IV assembly
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G109030.1	Cla97C05G109030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018793	Cytochrome c oxidase assembly protein PET191	PFAM	PF10203	Pet191_N	coord: 35..91 e-value: 1.4E-17 score: 63.6
IPR018793	Cytochrome c oxidase assembly protein PET191	PANTHER	PTHR28627	FAMILY NOT NAMED	coord: 34..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G109030	Csa5G623760	Cucumber (Chinese Long) v2	cuwmbB379
Cla97C05G109030	MELO3C012466	Melon (DHL92) v3.5.1	mewmbB061
Cla97C05G109030	ClCG05G026760	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G109030	Cucsa.308010	Cucumber (Gy14) v1	cgywmbB534
Cla97C05G109030	CmaCh04G013340	Cucurbita maxima (Rimu)	cmawmbB765
Cla97C05G109030	CmoCh04G014080	Cucurbita moschata (Rifu)	cmowmbB737
Cla97C05G109030	Lsi04G000310	Bottle gourd (USVL1VR-Ls)	lsiwmbB292
Cla97C05G109030	CsGy5G026950	Cucumber (Gy14) v2	cgybwmbB360
Cla97C05G109030	MELO3C012466.2	Melon (DHL92) v3.6.1	medwmbB057
Cla97C05G109030	Carg01989	Silver-seed gourd	carwmbB0876
Cla97C05G109030	CsaV3_5G036700	Cucumber (Chinese Long) v3	cucwmbB393

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G109030	Silver-seed gourd	carwmbB0758
Cla97C05G109030	Cucurbita maxima (Rimu)	cmawmbB427
Cla97C05G109030	Cucurbita moschata (Rifu)	cmowmbB407
Cla97C05G109030	Wild cucumber (PI 183967)	cpiwmbB397
Cla97C05G109030	Watermelon (97103) v1	wmwmbB207