CmoCh04G014080 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G014080
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cytochrome C oxidase assembly protein PET191
Location	Cmo_Chr04 : 7179607 .. 7180078 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAGTCTTGCAAAGGTTTAGCGATGGAACTGGTCAAGTGTCTCAGCGAATCCGATTGTGTAAAGGTCTTGTATAATCATCTTCTCTCTGTATTTGTCTGTCTTTATGTGTGTGCGTGTGCAGACATGTATCTTATCAGTACTTGGATAATCTTACTATAGAATTGCCATCTATTATTCTTAAATGTCCTTTTTACTCTTTGGCTATCATTTGTGACAGATTATACAGTATTAATGAATGTTAGAACAGTCTATCACGAATAATGTAAATAAGGATGTATAGCGTCGTTGCTTGATTTCAACATGGATTTCAGTCTTTATGTTGTTGTAATTTCAGGTCCAGAACCGAACTTACAAGGAATGTGCTGGAGAGAAGAGTCCTTGCATTCCTAGCGAATGCGTGGGATTAAGGGAAACATATTTCAATTGTAAAAGAGGCCAGGCAAGTTATCGTGAACTCCTTCTCTAG

mRNA sequence

ATGTCGAAGTCTTGCAAAGGTTTAGCGATGGAACTGGTCAAGTGTCTCAGCGAATCCGATTGTGTAAAGGTCTTGTATAATCATCTTCTCTCTGTATTTGTCTGTCTTTATGTGTGTGCGTGTGCAGACATGTATCTTATCAATTATACAGTATTAATGAATGTCCAGAACCGAACTTACAAGGAATGTGCTGGAGAGAAGAGTCCTTGCATTCCTAGCGAATGCGTGGGATTAAGGGAAACATATTTCAATTGTAAAAGAGGCCAGGCAAGTTATCGTGAACTCCTTCTCTAG

Coding sequence (CDS)

ATGTCGAAGTCTTGCAAAGGTTTAGCGATGGAACTGGTCAAGTGTCTCAGCGAATCCGATTGTGTAAAGGTCTTGTATAATCATCTTCTCTCTGTATTTGTCTGTCTTTATGTGTGTGCGTGTGCAGACATGTATCTTATCAATTATACAGTATTAATGAATGTCCAGAACCGAACTTACAAGGAATGTGCTGGAGAGAAGAGTCCTTGCATTCCTAGCGAATGCGTGGGATTAAGGGAAACATATTTCAATTGTAAAAGAGGCCAGGCAAGTTATCGTGAACTCCTTCTCTAG

Homology

[Close]

BLAST of CmoCh04G014080 vs. TrEMBL
Match: A0A0A0KRS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623760 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.1e-22
Identity = 58/93 (62.37%), Postives = 59/93 (63.44%), Query Frame = 1


Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVCLYVCACADMYLINYTVLMNVQNRTY 60
          MSKSCKGLAMELVKCLSESDCVKV                               QNRTY
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKV-------------------------------QNRTY 60

Query: 61 KECAGEKSPCIPSECVGLRETYFNCKRGQASYR 94
          +ECAGEKSPCIPSECVGLRETYFNCKRGQ   R
Sbjct: 61 RECAGEKSPCIPSECVGLRETYFNCKRGQVDMR 62

[Close]

BLAST of CmoCh04G014080 vs. TrEMBL
Match: E5GCJ7_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.5e-21
Identity = 57/89 (64.04%), Postives = 58/89 (65.17%), Query Frame = 1


Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVCLYVCACADMYLINYTVLMNVQNRTY 60
          MSKSCKGLAMELVKCLSESDCVKV                               QNRTY
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKV-------------------------------QNRTY 58

Query: 61 KECAGEKSPCIPSECVGLRETYFNCKRGQ 90
          +ECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 61 RECAGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]

BLAST of CmoCh04G014080 vs. TrEMBL
Match: K7LWH3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G229900 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.6e-21
Identity = 56/91 (61.54%), Postives = 58/91 (63.74%), Query Frame = 1


Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVCLYVCACADMYLINYTVLMNVQNRTY 60
          MSKSCKGLAMELVKCLSESDCVKV                               + R+Y
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKV-------------------------------EKRSY 60

Query: 61 KECAGEKSPCIPSECVGLRETYFNCKRGQAS 92
          KEC GEKSPCIPSECVGLRETYFNCKRGQAS
Sbjct: 61 KECVGEKSPCIPSECVGLRETYFNCKRGQAS 60

[Close]

BLAST of CmoCh04G014080 vs. TrEMBL
Match: A0A151S961_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_026786 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-20
Identity = 55/91 (60.44%), Postives = 58/91 (63.74%), Query Frame = 1


Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVCLYVCACADMYLINYTVLMNVQNRTY 60
          MSKSCKGLAMELVKCLSESDCVKV                               + R+Y
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKV-------------------------------EKRSY 60

Query: 61 KECAGEKSPCIPSECVGLRETYFNCKRGQAS 92
          +EC GEKSPCIPSECVGLRETYFNCKRGQAS
Sbjct: 61 RECVGEKSPCIPSECVGLRETYFNCKRGQAS 60

[Close]

BLAST of CmoCh04G014080 vs. TrEMBL
Match: A0A0B2RXF0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_001620 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-20
Identity = 55/91 (60.44%), Postives = 57/91 (62.64%), Query Frame = 1


Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVCLYVCACADMYLINYTVLMNVQNRTY 60
          MSKSCKGLAMELVKCLSESDCVKV                               + R+Y
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKV-------------------------------EKRSY 60

Query: 61 KECAGEKSPCIPSECVGLRETYFNCKRGQAS 92
          KEC GEKSPCIPSEC GLRETYFNCKRGQAS
Sbjct: 61 KECVGEKSPCIPSECAGLRETYFNCKRGQAS 60

[Close]

BLAST of CmoCh04G014080 vs. TAIR10
Match: AT1G10865.1 (AT1G10865.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 90.9 bits (224), Expect = 4.7e-19
Identity = 48/93 (51.61%), Postives = 53/93 (56.99%), Query Frame = 1


Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVCLYVCACADMYLINYTVLMNVQNRTY 60
          M+KSCKGLA ELVKCLSES CVK                                + R+ 
Sbjct: 1  MAKSCKGLAEELVKCLSESICVKG-------------------------------EKRSI 60

Query: 61 KECAGEKSPCIPSECVGLRETYFNCKRGQASYR 94
          ++C GEKSPCIPSECVGLRETYFNCKRGQ   R
Sbjct: 61 RDCTGEKSPCIPSECVGLRETYFNCKRGQVDMR 62

[Close]

BLAST of CmoCh04G014080 vs. NCBI nr
Match: gi|659092196|ref|XP_008446948.1| (PREDICTED: cytochrome c oxidase assembly factor 5 [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 7.3e-22
Identity = 58/93 (62.37%), Postives = 59/93 (63.44%), Query Frame = 1


Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVCLYVCACADMYLINYTVLMNVQNRTY 60
          MSKSCKGLAMELVKCLSESDCVKV                               QNRTY
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKV-------------------------------QNRTY 60

Query: 61 KECAGEKSPCIPSECVGLRETYFNCKRGQASYR 94
          +ECAGEKSPCIPSECVGLRETYFNCKRGQ   R
Sbjct: 61 RECAGEKSPCIPSECVGLRETYFNCKRGQVDMR 62

[Close]

BLAST of CmoCh04G014080 vs. NCBI nr
Match: gi|307136386|gb|ADN34196.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 110.2 bits (274), Expect = 2.1e-21
Identity = 57/89 (64.04%), Postives = 58/89 (65.17%), Query Frame = 1


Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVCLYVCACADMYLINYTVLMNVQNRTY 60
          MSKSCKGLAMELVKCLSESDCVKV                               QNRTY
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKV-------------------------------QNRTY 58

Query: 61 KECAGEKSPCIPSECVGLRETYFNCKRGQ 90
          +ECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 61 RECAGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]

BLAST of CmoCh04G014080 vs. NCBI nr
Match: gi|947078515|gb|KRH27355.1| (hypothetical protein GLYMA_12G229900 [Glycine max])

HSP 1 Score: 108.2 bits (269), Expect = 8.0e-21
Identity = 56/91 (61.54%), Postives = 58/91 (63.74%), Query Frame = 1


Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVCLYVCACADMYLINYTVLMNVQNRTY 60
          MSKSCKGLAMELVKCLSESDCVKV                               + R+Y
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKV-------------------------------EKRSY 60

Query: 61 KECAGEKSPCIPSECVGLRETYFNCKRGQAS 92
          KEC GEKSPCIPSECVGLRETYFNCKRGQAS
Sbjct: 61 KECVGEKSPCIPSECVGLRETYFNCKRGQAS 60

[Close]

BLAST of CmoCh04G014080 vs. NCBI nr
Match: gi|1012340134|gb|KYP51355.1| (hypothetical protein KK1_026786 [Cajanus cajan])

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-20
Identity = 55/91 (60.44%), Postives = 58/91 (63.74%), Query Frame = 1


Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVCLYVCACADMYLINYTVLMNVQNRTY 60
          MSKSCKGLAMELVKCLSESDCVKV                               + R+Y
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKV-------------------------------EKRSY 60

Query: 61 KECAGEKSPCIPSECVGLRETYFNCKRGQAS 92
          +EC GEKSPCIPSECVGLRETYFNCKRGQAS
Sbjct: 61 RECVGEKSPCIPSECVGLRETYFNCKRGQAS 60

[Close]

BLAST of CmoCh04G014080 vs. NCBI nr
Match: gi|734413444|gb|KHN36889.1| (hypothetical protein glysoja_001620 [Glycine soja])

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-20
Identity = 55/91 (60.44%), Postives = 57/91 (62.64%), Query Frame = 1


Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVCLYVCACADMYLINYTVLMNVQNRTY 60
          MSKSCKGLAMELVKCLSESDCVKV                               + R+Y
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKV-------------------------------EKRSY 60

Query: 61 KECAGEKSPCIPSECVGLRETYFNCKRGQAS 92
          KEC GEKSPCIPSEC GLRETYFNCKRGQAS
Sbjct: 61 KECVGEKSPCIPSECAGLRETYFNCKRGQAS 60

The following BLAST results are available for this feature:

BLAST of CmoCh04G014080 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G014080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRS4_CUCSA	5.1e-22	62.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623760 PE=4 SV=1	[more]
E5GCJ7_CUCME	1.5e-21	64.04	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
K7LWH3_SOYBN	5.6e-21	61.54	Uncharacterized protein OS=Glycine max GN=GLYMA_12G229900 PE=4 SV=1	[more]
A0A151S961_CAJCA	1.2e-20	60.44	Uncharacterized protein OS=Cajanus cajan GN=KK1_026786 PE=4 SV=1	[more]
A0A0B2RXF0_GLYSO	1.6e-20	60.44	Uncharacterized protein OS=Glycine soja GN=glysoja_001620 PE=4 SV=1	[more]

BLAST of CmoCh04G014080 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10865.1	4.7e-19	51.61	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CmoCh04G014080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092196\|ref\|XP_008446948.1\|	7.3e-22	62.37	PREDICTED: cytochrome c oxidase assembly factor 5 [Cucumis melo]	[more]
gi\|307136386\|gb\|ADN34196.1\|	2.1e-21	64.04	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|947078515\|gb\|KRH27355.1\|	8.0e-21	61.54	hypothetical protein GLYMA_12G229900 [Glycine max]	[more]
gi\|1012340134\|gb\|KYP51355.1\|	1.8e-20	60.44	hypothetical protein KK1_026786 [Cajanus cajan]	[more]
gi\|734413444\|gb\|KHN36889.1\|	2.3e-20	60.44	hypothetical protein glysoja_001620 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018793	Cyt_c_oxidase_assmbl_Pet191

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0033617	mitochondrial respiratory chain complex IV assembly
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G014080.1	CmoCh04G014080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018793	Cytochrome c oxidase assembly protein PET191	PFAM	PF10203	Pet191_N	coord: 53..93 score: 2.
None	No IPR available	PANTHER	PTHR28627	FAMILY NOT NAMED	coord: 56..94 score: 3.8E-16coord: 1..24 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G014080	Cucsa.308010	Cucumber (Gy14) v1	cgycmoB0848
CmoCh04G014080	CmaCh04G013340	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G014080	Csa5G623760	Cucumber (Chinese Long) v2	cmocuB738
CmoCh04G014080	MELO3C012466	Melon (DHL92) v3.5.1	cmomeB631
CmoCh04G014080	Lsi04G000310	Bottle gourd (USVL1VR-Ls)	cmolsiB660
CmoCh04G014080	Cp4.1LG01g15060	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G014080	MELO3C012466.2	Melon (DHL92) v3.6.1	cmomedB720
CmoCh04G014080	CsaV3_5G036700	Cucumber (Chinese Long) v3	cmocucB0874
CmoCh04G014080	Cla97C05G109030	Watermelon (97103) v2	cmowmbB737
CmoCh04G014080	CsGy5G026950	Cucumber (Gy14) v2	cgybcmoB650
CmoCh04G014080	Carg01989	Silver-seed gourd	carcmoB1138

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G014080	Silver-seed gourd	carcmoB0987
CmoCh04G014080	Cucurbita moschata (Rifu)	cmocmoB336
CmoCh04G014080	Cucurbita maxima (Rimu)	cmacmoB420
CmoCh04G014080	Wild cucumber (PI 183967)	cmocpiB745
CmoCh04G014080	Watermelon (Charleston Gray)	cmowcgB662
CmoCh04G014080	Watermelon (97103) v1	cmowmB701
CmoCh04G014080	Cucurbita pepo (Zucchini)	cmocpeB651