Cp4.1LG01g15060 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g15060
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionCytochrome C oxidase assembly protein PET191
LocationCp4.1LG01 : 7213575 .. 7214046 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAAGTCTTGCAAAGGTTTAGCGATGGAACTGGTCAAGTGTCTCAGCGAATCCGATTGTGTAAAGGTCTTGTATAATCATCTTCTCTCTGTATTTGTCCGTCTTTATGTGTGTGCGTGTGCAGACATGTATCTTATCAGTACTTGGATAATCTTACTATAGAATTGCCATCTATTATTCTGAAATGTCCTTTTTACTCTTTGGCTATCATTTGTGACAGATTATACAGTATTAATGAATGTTAGAACAGTCTATCACGAATAATGTAAATAAGGATGTATAGCGTCGTTGCTTGATTTCAACATGGATTTCAGTCTTTATGTTGTTGTAATTTCAGGTCCAGAACCGAACTTACAAGGAATGTGCTGGAGAGAAGAGTCCTTGCATTCCTAGCGAATGCGTGGGATTAAGGGAAACATATTTCAATTGTAAAAGAGGCCAGGCAAGTTTTCGTGAACTCCTTCTCTAG

mRNA sequence

ATGTCGAAGTCTTGCAAAGGTTTAGCGATGGAACTGGTCAAGTGTCTCAGCGAATCCGATTGTGTAAAGGTCTTGTATAATCATCTTCTCTCTGTATTTGTCCGTCTTTATGTCCAGAACCGAACTTACAAGGAATGTGCTGGAGAGAAGAGTCCTTGCATTCCTAGCGAATGCGTGGGATTAAGGGAAACATATTTCAATTGTAAAAGAGGCCAGGCAAGTTTTCGTGAACTCCTTCTCTAG

Coding sequence (CDS)

ATGTCGAAGTCTTGCAAAGGTTTAGCGATGGAACTGGTCAAGTGTCTCAGCGAATCCGATTGTGTAAAGGTCTTGTATAATCATCTTCTCTCTGTATTTGTCCGTCTTTATGTCCAGAACCGAACTTACAAGGAATGTGCTGGAGAGAAGAGTCCTTGCATTCCTAGCGAATGCGTGGGATTAAGGGAAACATATTTCAATTGTAAAAGAGGCCAGGCAAGTTTTCGTGAACTCCTTCTCTAG

Protein sequence

MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVRLYVQNRTYKECAGEKSPCIPSECVGLRETYFNCKRGQASFRELLL
Homology
[Close]
BLAST of Cp4.1LG01g15060 vs. TrEMBL
Match: A0A0A0KRS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623760 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-24
Identity = 58/76 (76.32%), Postives = 59/76 (77.63%), Query Frame = 1 

Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVRLYVQNRTYKECAGEKSPCIPSECVG 60
          MSKSCKGLAMELVKCLSESDCVKV              QNRTY+ECAGEKSPCIPSECVG
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKV--------------QNRTYRECAGEKSPCIPSECVG 60

Query: 61 LRETYFNCKRGQASFR 77
          LRETYFNCKRGQ   R
Sbjct: 61 LRETYFNCKRGQVDMR 62

[Close]
BLAST of Cp4.1LG01g15060 vs. TrEMBL
Match: E5GCJ7_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.6e-24
Identity = 57/72 (79.17%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVRLYVQNRTYKECAGEKSPCIPSECVG 60
          MSKSCKGLAMELVKCLSESDCVKV              QNRTY+ECAGEKSPCIPSECVG
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKV--------------QNRTYRECAGEKSPCIPSECVG 58

Query: 61 LRETYFNCKRGQ 73
          LRETYFNCKRGQ
Sbjct: 61 LRETYFNCKRGQ 58

[Close]
BLAST of Cp4.1LG01g15060 vs. TrEMBL
Match: K7LWH3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G229900 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.8e-23
Identity = 56/74 (75.68%), Postives = 58/74 (78.38%), Query Frame = 1 

Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVRLYVQNRTYKECAGEKSPCIPSECVG 60
          MSKSCKGLAMELVKCLSESDCVKV              + R+YKEC GEKSPCIPSECVG
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKV--------------EKRSYKECVGEKSPCIPSECVG 60

Query: 61 LRETYFNCKRGQAS 75
          LRETYFNCKRGQAS
Sbjct: 61 LRETYFNCKRGQAS 60

[Close]
BLAST of Cp4.1LG01g15060 vs. TrEMBL
Match: A0A151S961_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_026786 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.4e-23
Identity = 55/74 (74.32%), Postives = 58/74 (78.38%), Query Frame = 1 

Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVRLYVQNRTYKECAGEKSPCIPSECVG 60
          MSKSCKGLAMELVKCLSESDCVKV              + R+Y+EC GEKSPCIPSECVG
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKV--------------EKRSYRECVGEKSPCIPSECVG 60

Query: 61 LRETYFNCKRGQAS 75
          LRETYFNCKRGQAS
Sbjct: 61 LRETYFNCKRGQAS 60

[Close]
BLAST of Cp4.1LG01g15060 vs. TrEMBL
Match: K7LWH4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G229900 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.4e-23
Identity = 55/76 (72.37%), Postives = 57/76 (75.00%), Query Frame = 1 

Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVRLYVQNRTYKECAGEKSPCIPSECVG 60
          MSKSCKGLAMELVKCLSESDCVKV              + R+YKEC GEKSPCIPSECVG
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKV--------------EKRSYKECVGEKSPCIPSECVG 60

Query: 61 LRETYFNCKRGQASFR 77
          LRETYFNCKRGQ   R
Sbjct: 61 LRETYFNCKRGQVDMR 62

[Close]
BLAST of Cp4.1LG01g15060 vs. TAIR10
Match: AT1G10865.1 (AT1G10865.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 98.6 bits (244), Expect = 1.9e-21
Identity = 48/76 (63.16%), Postives = 53/76 (69.74%), Query Frame = 1 

Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVRLYVQNRTYKECAGEKSPCIPSECVG 60
          M+KSCKGLA ELVKCLSES CVK               + R+ ++C GEKSPCIPSECVG
Sbjct: 1  MAKSCKGLAEELVKCLSESICVKG--------------EKRSIRDCTGEKSPCIPSECVG 60

Query: 61 LRETYFNCKRGQASFR 77
          LRETYFNCKRGQ   R
Sbjct: 61 LRETYFNCKRGQVDMR 62

[Close]
BLAST of Cp4.1LG01g15060 vs. NCBI nr
Match: gi|659092196|ref|XP_008446948.1| (PREDICTED: cytochrome c oxidase assembly factor 5 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 2.9e-24
Identity = 58/76 (76.32%), Postives = 59/76 (77.63%), Query Frame = 1 

Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVRLYVQNRTYKECAGEKSPCIPSECVG 60
          MSKSCKGLAMELVKCLSESDCVKV              QNRTY+ECAGEKSPCIPSECVG
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKV--------------QNRTYRECAGEKSPCIPSECVG 60

Query: 61 LRETYFNCKRGQASFR 77
          LRETYFNCKRGQ   R
Sbjct: 61 LRETYFNCKRGQVDMR 62

[Close]
BLAST of Cp4.1LG01g15060 vs. NCBI nr
Match: gi|307136386|gb|ADN34196.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 57/72 (79.17%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVRLYVQNRTYKECAGEKSPCIPSECVG 60
          MSKSCKGLAMELVKCLSESDCVKV              QNRTY+ECAGEKSPCIPSECVG
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKV--------------QNRTYRECAGEKSPCIPSECVG 58

Query: 61 LRETYFNCKRGQ 73
          LRETYFNCKRGQ
Sbjct: 61 LRETYFNCKRGQ 58

[Close]
BLAST of Cp4.1LG01g15060 vs. NCBI nr
Match: gi|947078515|gb|KRH27355.1| (hypothetical protein GLYMA_12G229900 [Glycine max])

HSP 1 Score: 115.2 bits (287), Expect = 5.4e-23
Identity = 56/74 (75.68%), Postives = 58/74 (78.38%), Query Frame = 1 

Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVRLYVQNRTYKECAGEKSPCIPSECVG 60
          MSKSCKGLAMELVKCLSESDCVKV              + R+YKEC GEKSPCIPSECVG
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKV--------------EKRSYKECVGEKSPCIPSECVG 60

Query: 61 LRETYFNCKRGQAS 75
          LRETYFNCKRGQAS
Sbjct: 61 LRETYFNCKRGQAS 60

[Close]
BLAST of Cp4.1LG01g15060 vs. NCBI nr
Match: gi|802768214|ref|XP_012090139.1| (PREDICTED: mitochondrial protein pet191 homolog [Jatropha curcas])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22
Identity = 55/76 (72.37%), Postives = 58/76 (76.32%), Query Frame = 1 

Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVRLYVQNRTYKECAGEKSPCIPSECVG 60
          MSKSCKGLAMELVKCLSESDCVKV              + R+Y+ECAGEKSPCIPSECVG
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKV--------------EKRSYRECAGEKSPCIPSECVG 60

Query: 61 LRETYFNCKRGQASFR 77
          LRETYFNCKRGQ   R
Sbjct: 61 LRETYFNCKRGQLDMR 62

[Close]
BLAST of Cp4.1LG01g15060 vs. NCBI nr
Match: gi|356544094|ref|XP_003540490.1| (PREDICTED: cytochrome c oxidase assembly factor 5-like [Glycine max])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22
Identity = 55/76 (72.37%), Postives = 57/76 (75.00%), Query Frame = 1 

Query: 1  MSKSCKGLAMELVKCLSESDCVKVLYNHLLSVFVRLYVQNRTYKECAGEKSPCIPSECVG 60
          MSKSCKGLAMELVKCLSESDCVKV              + R+YKEC GEKSPCIPSECVG
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKV--------------EKRSYKECVGEKSPCIPSECVG 60

Query: 61 LRETYFNCKRGQASFR 77
          LRETYFNCKRGQ   R
Sbjct: 61 LRETYFNCKRGQVDMR 62

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g15060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g15060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRS4_CUCSA2.0e-2476.32Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623760 PE=4 SV=1[more]
E5GCJ7_CUCME7.6e-2479.17Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
K7LWH3_SOYBN3.8e-2375.68Uncharacterized protein OS=Glycine max GN=GLYMA_12G229900 PE=4 SV=1[more]
A0A151S961_CAJCA8.4e-2374.32Uncharacterized protein OS=Cajanus cajan GN=KK1_026786 PE=4 SV=1[more]
K7LWH4_SOYBN8.4e-2372.37Uncharacterized protein OS=Glycine max GN=GLYMA_12G229900 PE=4 SV=1[more]
BLAST of Cp4.1LG01g15060 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G10865.11.9e-2163.16 FUNCTIONS IN: molecular_function unknown[more]
BLAST of Cp4.1LG01g15060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659092196|ref|XP_008446948.1|2.9e-2476.32PREDICTED: cytochrome c oxidase assembly factor 5 [Cucumis melo][more]
gi|307136386|gb|ADN34196.1|1.1e-2379.17hypothetical protein [Cucumis melo subsp. melo][more]
gi|947078515|gb|KRH27355.1|5.4e-2375.68hypothetical protein GLYMA_12G229900 [Glycine max][more]
gi|802768214|ref|XP_012090139.1|1.2e-2272.37PREDICTED: mitochondrial protein pet191 homolog [Jatropha curcas][more]
gi|356544094|ref|XP_003540490.1|1.2e-2272.37PREDICTED: cytochrome c oxidase assembly factor 5-like [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018793Cyt_c_oxidase_assmbl_Pet191
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0033617 mitochondrial respiratory chain complex IV assembly
cellular_component GO:0005575 cellular_component
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g15060.1Cp4.1LG01g15060.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018793Cytochrome c oxidase assembly protein PET191PFAMPF10203Pet191_Ncoord: 38..76
score: 5.
NoneNo IPR availablePANTHERPTHR28627FAMILY NOT NAMEDcoord: 1..77
score: 1.5
NoneNo IPR availablePANTHERPTHR28627:SF1CYTOCHROME C OXIDASE ASSEMBLY FACTOR 5coord: 1..77
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g15060Cucsa.308010Cucumber (Gy14) v1cgycpeB0806
Cp4.1LG01g15060CmaCh04G013340Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g15060CmoCh04G014080Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g15060Csa5G623760Cucumber (Chinese Long) v2cpecuB439
Cp4.1LG01g15060MELO3C012466Melon (DHL92) v3.5.1cpemeB363
Cp4.1LG01g15060ClCG05G026760Watermelon (Charleston Gray)cpewcgB396
Cp4.1LG01g15060Lsi04G000310Bottle gourd (USVL1VR-Ls)cpelsiB352
Cp4.1LG01g15060MELO3C012466.2Melon (DHL92) v3.6.1cpemedB423
Cp4.1LG01g15060CsaV3_5G036700Cucumber (Chinese Long) v3cpecucB0543
Cp4.1LG01g15060CsGy5G026950Cucumber (Gy14) v2cgybcpeB648
Cp4.1LG01g15060Carg01989Silver-seed gourdcarcpeB1177
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g15060Cucurbita pepo (Zucchini)cpecpeB040
Cp4.1LG01g15060Cucurbita maxima (Rimu)cmacpeB429
Cp4.1LG01g15060Cucurbita moschata (Rifu)cmocpeB392
Cp4.1LG01g15060Wild cucumber (PI 183967)cpecpiB439
Cp4.1LG01g15060Watermelon (97103) v1cpewmB435
Cp4.1LG01g15060Silver-seed gourdcarcpeB1021