Lsi04G000310.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G000310.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cytochrome C oxidase assembly protein PET191
Location	chr04 : 463388 .. 465670 (+)
Sequence length	246

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTGGTCAAGTGTCTTAGCGAATCTGATTGTGTAAAGGTCTTATATAATCATGTTCTCATTGTATATGACTGTCTTTATGTGTGTGGGTATGCAGACATGTATCTTGTGTATCAGTACTTGGATAATTTTATTATAGAATTGGCATCTGTTTTTCTGAAATGCATTTTTTACTCTTGGCAATCATTAACGGGTGTATTAGAACAATCTATCATGAAGAATGTGAACAAGGACGTATAGGGTAGTTGCTTTAATTCAACATGGTTTTCAGTCTCTTGTTGTTGCAATTTCAGGTTCAGAACAGAACTTACAGGGAATGTGCTGGAGAGAAGAGTCCTTGTATACCTAGCGAATGTGTGGGATTAAGGGAAACATATTTCAATTGTAAAAGAGGCCAGGCAAGTTTTCATTAACTCCTTCTCCAGTGTCCTGCAGTCATTAATTCTTTGTTGATTAGATCCTAATTGGGCGACTGCTACTTCAAAGTATTCTAAAATACACCTCATGATACAGCAACATGGCAACTTGTAGTTTAAAATTATACGTGGTATTATATGATTGCATAGATTGATGTTAAGATAGTGGACGAAAGATGATTAGTCACTTCTTTATCTTCTAATCTCAATGGGAAGTAGAGAACGTCTGTGGGTGGAGATAGCCAAAGGGACATCCAAAGTAATGTTAAACATGAATGTTGGAAAATTTTCGTGGAAAGAAATGCTAGGTTTTTTTAAGACAGTGAGATACATGTTAGTGATCAAATTAGAAAATGAGGGAAGATACGTCTGTGAGATTTACTATAGTTGAGTTGAGTGTAACCAAAAGTCAGTAAATGAATTATGAAATGAGAACTCGAGAAGCTGGAATGTGCTGACTAGAAGGAACTTGACAGCACTTGAATTTAGTGAACTTAATGACCTGCTGGATTTTCTAGAAAATGAGTGAATTGGAGTGGCGTGGATTTATGAGAGATTGTAGACTTTCCCTTTTTGGGTTGAACATTTTTATTATAACCAAATGGATGCAATGGTGGTCTAGAAAGAAGCTCTATAAGGAAGTGTGAATAGAAAAATATCCCAAAAAAGTCTGCCCAGCTTGTTCTCGTGGACTTGACTTCTGAAAGATGAAGGCTCGATGTCCTTCAATGGTTTTGTTATAAAACTTTTGTACCCCTCAGCGTGCCTTTATGTTTGTAAGTAGGTTTCAGATTTTCAGTTTTTCTCACATCGTACGTTGGAAGAGAATATATTTCATCTTGTTTATGGATATCCCTTAAGGGGCAAAACAAACAAACGTTAGTGTAGAGTCTCTGGTTGAAAGAAACGACGGAGTTAAGATTGGATAAATTTTGAGTTTGCTAAATGTTACTGTTCTTACTAGATTTCTGTAGATAATGCTCCCAATACCTGCAATTTGAGTCTAATTCATACTTCTAGAAGCGGTGCTTTTGAAATTCCATTAGGGACTGAGACTAACTGGCTGGCTTTATTTGGTATATCCTTAAAGATAGTTTTTACCATATTAATGAAAAGTGCTTCCTGTTTCTAAACGAAAAGCAATTGAATATCAGTGGCATTCTATGTTAAATTTGTTTTTCCGAAGTCGTCAATTTTGTTAGATGTTACAAAGTTGATGTAATGCATCTCACAACACTCAGTGCATCTCAAAATTCCAGGTTGACATGAGGGCAAGGATTCGAGGGAACAAAGGTTATTGAATGAGGGGTGGAGTTGAGCAATTCCTTGAGTAGAATTTTGGAACTTTGAATGCCTGGAAGTTTGTCTGCAGTGACCTGTAAAATCTTGCCCTTCTGCATATATTCAGTAACATTTGACTTTCGATTTTTTCATCGCTGAAGAGTTTTTCCGTCAATCTGCTTACAGAAGCCAGTAGCCAAATATTTAGTCCTGAGTTAATAGTGATTGTGTTTTCTTATGTTTTGGATTCTTACATTAACTTTGCCATGGCTGTTCAATATTGAAGGTTTTTTTTACCATTACACGAGTACATACACTTCTAGAAGAAGGAAGGGGTATACTTTCACTTGATTGTTCAGTAACTTGTATTCTTCTCATGTTTACCTTCTTATAGGAAGATGTTTGTGTTGGTATCCAATTCGAGCATGGCTTAACTGAGTTTTCTTGTACTTATAAGCAAGTTTATATCGTTCTTTTAGGCTATGTTCATGGTTAAGTTGGTCTAGCTATTAAAGGTTTTACTTGAAATGATTTTCTAAAGACATTGGAAATTTTAGGATATGCTCCATACACTGCAGAATGA

mRNA sequence

ATGGAACTGGTTCAGAACAGAACTTACAGGGAATGTGCTGGAGAGAAGAGTCCTTGTATACCTAGCGAATGTGTGGGATTAAGGGAAACATATTTCAATTGTAAAAGAGGCCAGGCAAATAATGCTCCCAATACCTGCAATTTGAGTCTAATTCATACTTCTAGAAGCGGTGCTTTTGAAATTCCATTAGGGACTGAGACTAACTGGCTGGCTTTATTTGGATATGCTCCATACACTGCAGAATGA

Coding sequence (CDS)

ATGGAACTGGTTCAGAACAGAACTTACAGGGAATGTGCTGGAGAGAAGAGTCCTTGTATACCTAGCGAATGTGTGGGATTAAGGGAAACATATTTCAATTGTAAAAGAGGCCAGGCAAATAATGCTCCCAATACCTGCAATTTGAGTCTAATTCATACTTCTAGAAGCGGTGCTTTTGAAATTCCATTAGGGACTGAGACTAACTGGCTGGCTTTATTTGGATATGCTCCATACACTGCAGAATGA

Protein sequence

MELVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQANNAPNTCNLSLIHTSRSGAFEIPLGTETNWLALFGYAPYTAE

Homology

[Close]

BLAST of Lsi04G000310.1 vs. TrEMBL
Match: E5GCJ7_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1


Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 39
          VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 24 VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]

BLAST of Lsi04G000310.1 vs. TrEMBL
Match: A0A0A0KRS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623760 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-13
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1


Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAN 41
          VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ +
Sbjct: 24 VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVD 60

[Close]

BLAST of Lsi04G000310.1 vs. TrEMBL
Match: A0A151S961_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_026786 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.8e-12
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1


Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAN 41
          V+ R+YREC GEKSPCIPSECVGLRETYFNCKRGQA+
Sbjct: 24 VEKRSYRECVGEKSPCIPSECVGLRETYFNCKRGQAS 60

[Close]

BLAST of Lsi04G000310.1 vs. TrEMBL
Match: V4U5G9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017354mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.8e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1


Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQA 40
          V+ R++RECAGEKSPCIPSECVGLRETYFNCKRGQA
Sbjct: 24 VEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQA 59

[Close]

BLAST of Lsi04G000310.1 vs. TrEMBL
Match: A0A067FDM3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034876mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.8e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1


Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQA 40
          V+ R++RECAGEKSPCIPSECVGLRETYFNCKRGQA
Sbjct: 24 VEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQA 59

[Close]

BLAST of Lsi04G000310.1 vs. TAIR10
Match: AT1G10865.1 (AT1G10865.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 70.5 bits (171), Expect = 5.5e-13
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1


Query: 5  QNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAN 41
          + R+ R+C GEKSPCIPSECVGLRETYFNCKRGQ +
Sbjct: 25 EKRSIRDCTGEKSPCIPSECVGLRETYFNCKRGQVD 60

[Close]

BLAST of Lsi04G000310.1 vs. NCBI nr
Match: gi|659092196|ref|XP_008446948.1| (PREDICTED: cytochrome c oxidase assembly factor 5 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 3.0e-13
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1


Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAN 41
          VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ +
Sbjct: 24 VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVD 60

[Close]

BLAST of Lsi04G000310.1 vs. NCBI nr
Match: gi|307136386|gb|ADN34196.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 82.8 bits (203), Expect = 3.0e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1


Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 39
          VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 24 VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]

BLAST of Lsi04G000310.1 vs. NCBI nr
Match: gi|1012340134|gb|KYP51355.1| (hypothetical protein KK1_026786 [Cajanus cajan])

HSP 1 Score: 77.8 bits (190), Expect = 9.7e-12
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1


Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAN 41
          V+ R+YREC GEKSPCIPSECVGLRETYFNCKRGQA+
Sbjct: 24 VEKRSYRECVGEKSPCIPSECVGLRETYFNCKRGQAS 60

[Close]

BLAST of Lsi04G000310.1 vs. NCBI nr
Match: gi|802768214|ref|XP_012090139.1| (PREDICTED: mitochondrial protein pet191 homolog [Jatropha curcas])

HSP 1 Score: 77.8 bits (190), Expect = 9.7e-12
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1


Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 39
          V+ R+YRECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 24 VEKRSYRECAGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]

BLAST of Lsi04G000310.1 vs. NCBI nr
Match: gi|567907563|ref|XP_006446095.1| (hypothetical protein CICLE_v10017354mg [Citrus clementina])

HSP 1 Score: 77.8 bits (190), Expect = 9.7e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1


Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQA 40
          V+ R++RECAGEKSPCIPSECVGLRETYFNCKRGQA
Sbjct: 24 VEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQA 59

The following BLAST results are available for this feature:

BLAST of Lsi04G000310.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G000310.1 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCJ7_CUCME	2.1e-13	100.00	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KRS4_CUCSA	2.1e-13	94.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623760 PE=4 SV=1	[more]
A0A151S961_CAJCA	6.8e-12	86.49	Uncharacterized protein OS=Cajanus cajan GN=KK1_026786 PE=4 SV=1	[more]
V4U5G9_9ROSI	6.8e-12	88.89	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017354mg PE=4 SV=1	[more]
A0A067FDM3_CITSI	6.8e-12	88.89	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034876mg PE=4 SV=1	[more]

BLAST of Lsi04G000310.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10865.1	5.5e-13	77.78	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Lsi04G000310.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092196\|ref\|XP_008446948.1\|	3.0e-13	94.59	PREDICTED: cytochrome c oxidase assembly factor 5 [Cucumis melo]	[more]
gi\|307136386\|gb\|ADN34196.1\|	3.0e-13	100.00	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|1012340134\|gb\|KYP51355.1\|	9.7e-12	86.49	hypothetical protein KK1_026786 [Cajanus cajan]	[more]
gi\|802768214\|ref\|XP_012090139.1\|	9.7e-12	91.43	PREDICTED: mitochondrial protein pet191 homolog [Jatropha curcas]	[more]
gi\|567907563\|ref\|XP_006446095.1\|	9.7e-12	88.89	hypothetical protein CICLE_v10017354mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR018793	Cyt_c_oxidase_assmbl_Pet191

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi04G000310	Lsi04G000310	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G000310.1.CDS.1	Lsi04G000310.1.CDS.1	CDS
Lsi04G000310.1.CDS.2	Lsi04G000310.1.CDS.2	CDS
Lsi04G000310.1.CDS.3	Lsi04G000310.1.CDS.3	CDS
Lsi04G000310.1.CDS.4	Lsi04G000310.1.CDS.4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi04G000310.1	Lsi04G000310.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018793	Cytochrome c oxidase assembly protein PET191	PFAM	PF10203	Pet191_N	coord: 5..41 score: 1.
None	No IPR available	PANTHER	PTHR28627	FAMILY NOT NAMED	coord: 3..41 score: 9.7