Lsi03G005970 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi03G005970
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionPhotosystem I reaction center subunit N
Locationchr03 : 7428610 .. 7431343 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTATTAAAGGTATATTATATGGACCAAGAAAGCCTCATCTATTCTCTTCAACCTCATCCTCAAAACTCAAAACTCAAAACTCTCACTCCGATGAGTTCCATCGGCCAAAGCATTCTCATGGCCCTCGCCGTCACTCTCAACAAATTCGCTTCCTCTAACGTTCAATCCGTTCAGAGAAACCAAGCCAACAAGCCTCCCACCACCACCACCGCCGCCACTGCCACCGCCGGTTCTGCAATCGGAAGAAGAGGCCTCCTCTTGTCCGCCGTTGCTTCCACCGCCGCCGCCGCTCCTGAAGAAGCCGTCGACTCCAGAACCGAGCTGCTAAAAAGTGCTGCATTCTTCTCTTTCTTCTTCTTTTTGAGGGCTTTCTTTTGTGTTTTAATTTTTCTGCTTTTGGAAAAATTATTCTTTTTTTCCTTTTGTACCGAAGAAAATTAATTTTGGGAGAAGCATTGCAATGAGTTCATCTGTTTTTGTTATCCAATTTCTTTCAAGAATATCGGAGTTTGTTGTGGATAAACCAAATTTATTTATTTTTCAAAAAAAAAAAAAAAAAACTCAGTGAATTAGTGGATGCAATATGACTTTTTTTTTTTTTTTTTTTTTTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTTTTTTTTTTTTAAATGTAGTTTCGTAGATTTTCGTCCATCTGTACCACCTTACAAATCGATTTCGTGATTTCTTATCAAAGTTGAGTTTTAAATAAGGTATGTATTACTATGAAAAATCATATGGTAGTAGATTAAAAAATTATAATCATGTACTTATAATTTTTTTTTTTAAATTTTTCCAGTTTAGTAATAGAAGTCTATCACCCATAATTGATTGACTTTATTAGTACAAATTTTTAGAGTTGAATACAATAATAGTTAAATTAGAGTTTAGTCTATAATATTTTTAGTGTTGTATATTTAGAAGGTGTTTAGAGTACTGAGTTGAGTTATGAAGTCTAGAGTTAATATATTGAAGTTAGGAAGTCTGTGTTTGAGGTACAGAGTTGTGAACATGAAATTCTTTGATAAATATGTAAAAAAGAGAAAAATGGAAAGATGGAGTTCCTCGATAAATGTGCAAATTTAAATAATTTGGTAAAGTTGAGTTATTTAACACCGATTTATGAAGTCAGTGTGCCAAACATCCCCTTTAGTATTTGAACTTTAGAAAGTATCTATAGATATATGAACTTCTAAAAGTATTTAATAGATTTCTTAATTTTCAATTTTGTGTTTAACATTGACCAATTCGAGTTTTTTTTTTTTGGGAAAATTTTCACAAATAGAAAAAATGTTAGACTATTTACAGAAAATAGCAAAAAAAAAATACTAATAAACATTGATAGACTTCTATCAGCATCTATCAGTGATAGACTTCTATCATTTCTATCACTGATAGACCTTGATAAACTTCTATCAATGTCTATCACAATTATCTAAAAAATTTGTTATTTTGTGTAAATAGTTTCCCTTATTTTTCTATTTTTAAAAAGTTCCCTTTTTTTTCTTTTATAATTCATATAACCGACACAAAATTAAAAGTTTGGGTTCTTTCAACATAAGTTTCATTTTGATAATTTTTTAGTATGTTTGGGACTTATTACTATATAAATAAGAAGTTAAAGGGATCTATTAATTAGAAATAAAATAAAATTGAGAGTACTTGACTTATTAGACATTTAATAAACATTATTGGATGATTCATTTTTATTCTATTGTATAAATTGTCACAGTTAACCATGATTAACATACATTTTATTTTTCTTATTATATGTATATGAATTTAATATTTGAATTCCTAGGAACTATGCTACACTTTGCTCTAATTAATGACTTTCCTTACAATCCAAATATCTTTTGTATTAGGGTACCTCAAGAAGTCTGAAGATAACAAAGAAAAGAATGACAAGGAGGTAATTTTTTTGTAATTTTGCCTATATTCTATTTTATTAAAAAATTTAAATCCTTATTTTCTAGTGTTCTAGAAAAATGATTTAAATATGATCGTTTATGGTCTAACTATCACTCTATAATATATGATACAAAAAAATTTGTAATTTTAACAGAGATTGGAAAGTTACTACAAGCGAAATT

mRNA sequence

CTTTTATTAAAGGTATATTATATGGACCAAGAAAGCCTCATCTATTCTCTTCAACCTCATCCTCAAAACTCAAAACTCAAAACTCTCACTCCGATGAGTTCCATCGGCCAAAGCATTCTCATGGCCCTCGCCGTCACTCTCAACAAATTCGCTTCCTCTAACGTTCAATCCGTTCAGAGAAACCAAGCCAACAAGCCTCCCACCACCACCACCGCCGCCACTGCCACCGCCGGTTCTGCAATCGGAAGAAGAGGCCTCCTCTTGTCCGCCGTTGCTTCCACCGCCGCCGCCGCTCCTGAAGAAGCCGTCGACTCCAGAACCGAGCTGCTAAAAAGGTACCTCAAGAAGTCTGAAGATAACAAAGAAAAGAATGACAAGGAGGTAATTTTTTTGTAATTTTGCCTATATTCTATTTTATTAAAAAATTTAAATCCTTATTTTCTAGTGTTCTAGAAAAATGATTTAAATATGATCGTTTATGGTCTAACTATCACTCTATAATATATGATACAAAAAAATTTGTAATTTTAACAGAGATTGGAAAGTTACTACAAGCGAAATT

Coding sequence (CDS)

ATGGACCAAGAAAGCCTCATCTATTCTCTTCAACCTCATCCTCAAAACTCAAAACTCAAAACTCTCACTCCGATGAGTTCCATCGGCCAAAGCATTCTCATGGCCCTCGCCGTCACTCTCAACAAATTCGCTTCCTCTAACGTTCAATCCGTTCAGAGAAACCAAGCCAACAAGCCTCCCACCACCACCACCGCCGCCACTGCCACCGCCGGTTCTGCAATCGGAAGAAGAGGCCTCCTCTTGTCCGCCGTTGCTTCCACCGCCGCCGCCGCTCCTGAAGAAGCCGTCGACTCCAGAACCGAGCTGCTAAAAAGGTACCTCAAGAAGTCTGAAGATAACAAAGAAAAGAATGACAAGGAGGTAATTTTTTTGTAA

Protein sequence

MDQESLIYSLQPHPQNSKLKTLTPMSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKEVIFL
BLAST of Lsi03G005970 vs. TrEMBL
Match: A0A061E0K5_THECC (Cell cycle progression protein 1 OS=Theobroma cacao GN=TCM_007250 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-16
Identity = 65/108 (60.19%), Postives = 75/108 (69.44%), Query Frame = 1

Query: 25  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTT------TAATATAGSA----- 84
           MSS+ QS+LMAL VT+N+FASSNV +V R Q   PP TT      T    TAG+A     
Sbjct: 1   MSSMAQSVLMALTVTVNQFASSNVHAVHRKQGKSPPPTTSKPKPSTTTPITAGAATSDTI 60

Query: 85  -IGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE 121
            IGRRGL+LSAVA    AAP+   DSRTELLK+YLKKSE+NK KNDKE
Sbjct: 61  GIGRRGLILSAVA----AAPQ-LNDSRTELLKKYLKKSEENKAKNDKE 103

BLAST of Lsi03G005970 vs. TrEMBL
Match: B9S828_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1384420 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.1e-16
Identity = 59/96 (61.46%), Postives = 72/96 (75.00%), Query Frame = 1

Query: 25  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAV 84
           MSSI QS+LMAL VT+NKFASSNV SVQR +A+K  + T+ +  TA    GRRG+LLSA+
Sbjct: 1   MSSISQSVLMALTVTVNKFASSNVHSVQRREASKKSSPTSGSATTAFPIFGRRGILLSAL 60

Query: 85  ASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE 121
               AA P    DS+TELLK+YLKKSE+N+ KNDKE
Sbjct: 61  ---VAAYPVN--DSKTELLKKYLKKSEENRTKNDKE 91

BLAST of Lsi03G005970 vs. TrEMBL
Match: W9R137_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011132 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.5e-15
Identity = 60/96 (62.50%), Postives = 68/96 (70.83%), Query Frame = 1

Query: 25  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAV 84
           MSSIGQSILMAL VT+NK+ASSNVQ+V R +  K PTT T       + IGRRGL LS V
Sbjct: 1   MSSIGQSILMALTVTVNKYASSNVQAVHRKR--KRPTTATT------TDIGRRGLFLSTV 60

Query: 85  ASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE 121
                 A  +  DSRTELLK+YLKKSE+NK KNDKE
Sbjct: 61  -----VAALQVSDSRTELLKKYLKKSEENKAKNDKE 83

BLAST of Lsi03G005970 vs. TrEMBL
Match: B9GIB3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s29940g PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.7e-15
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = 1

Query: 25  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAV 84
           MSSI QS+LMAL VT NKFASSNV +V + ++ +    TTA  A+  + IGRRG+LLS V
Sbjct: 1   MSSISQSVLMALTVTFNKFASSNVNAVHKKESKRAAAATTAKAASRAADIGRRGVLLSTV 60

Query: 85  ASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE 121
               +       DSR ELLK+YLKKSEDNK KNDKE
Sbjct: 61  VGVYSVN-----DSRIELLKKYLKKSEDNKTKNDKE 91

BLAST of Lsi03G005970 vs. TrEMBL
Match: A0A0B0PWM0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_09324 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-14
Identity = 64/107 (59.81%), Postives = 74/107 (69.16%), Query Frame = 1

Query: 25  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKP-------PTTT---TAATATAG-SA 84
           M SI QS+LMAL VT+N+FASSNV +V R Q   P       PT T   TAA A AG + 
Sbjct: 1   MGSIAQSVLMALTVTVNQFASSNVHAVHRKQGKSPSPTSKPKPTNTKTITAAAANAGDTG 60

Query: 85  IGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE 121
           I RRGL+LSAVAS    AP+   DSRTELLK+YLKK+E+NK KNDKE
Sbjct: 61  IARRGLILSAVAS----APQ-LNDSRTELLKKYLKKTEENKAKNDKE 102

BLAST of Lsi03G005970 vs. TAIR10
Match: AT1G49975.1 (AT1G49975.1 INVOLVED IN: photosynthesis)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 1

Query: 25  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAV 84
           MSSI QSILMAL VT+NK+ASSNVQ+V+RN   +   T   A       +GRR +L S+ 
Sbjct: 1   MSSISQSILMALTVTVNKYASSNVQAVRRNDTKRHSLTAPPAD------LGRRNILFSST 60

Query: 85  ASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE 121
           +  AA     A+ S  +LL++YLKK+E+NK KNDKE
Sbjct: 61  SFIAA-----ALTSSDQLLQKYLKKTEENKAKNDKE 85

BLAST of Lsi03G005970 vs. NCBI nr
Match: gi|659110103|ref|XP_008455049.1| (PREDICTED: uncharacterized protein LOC103495319 [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 2.4e-22
Identity = 72/96 (75.00%), Postives = 75/96 (78.12%), Query Frame = 1

Query: 25  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAV 84
           MSSIGQSILMALAVTLNKFASSNVQSVQRN+A          TAT  S IGRR LLLS V
Sbjct: 1   MSSIGQSILMALAVTLNKFASSNVQSVQRNKA----------TATVSSPIGRRDLLLSTV 60

Query: 85  ASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE 121
           A  + AA   AVDSRTELLKRYLKKSE+NKEKNDKE
Sbjct: 61  APASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKE 86

BLAST of Lsi03G005970 vs. NCBI nr
Match: gi|449438315|ref|XP_004136934.1| (PREDICTED: uncharacterized protein LOC101214221 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-21
Identity = 72/96 (75.00%), Postives = 76/96 (79.17%), Query Frame = 1

Query: 25  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAV 84
           MSSIGQSILMALAVTLNKFASSNVQSVQRN+A         ATAT  S IGRR LLLS +
Sbjct: 1   MSSIGQSILMALAVTLNKFASSNVQSVQRNKA--------TATATVSSPIGRRSLLLSTL 60

Query: 85  ASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE 121
           A  +AAA    VDSRTELLKRYLKKSE+NKEKNDKE
Sbjct: 61  APASAAA-ASTVDSRTELLKRYLKKSEENKEKNDKE 87

BLAST of Lsi03G005970 vs. NCBI nr
Match: gi|590687474|ref|XP_007042674.1| (Cell cycle progression protein 1 [Theobroma cacao])

HSP 1 Score: 93.2 bits (230), Expect = 3.4e-16
Identity = 65/108 (60.19%), Postives = 75/108 (69.44%), Query Frame = 1

Query: 25  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTT------TAATATAGSA----- 84
           MSS+ QS+LMAL VT+N+FASSNV +V R Q   PP TT      T    TAG+A     
Sbjct: 1   MSSMAQSVLMALTVTVNQFASSNVHAVHRKQGKSPPPTTSKPKPSTTTPITAGAATSDTI 60

Query: 85  -IGRRGLLLSAVASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE 121
            IGRRGL+LSAVA    AAP+   DSRTELLK+YLKKSE+NK KNDKE
Sbjct: 61  GIGRRGLILSAVA----AAPQ-LNDSRTELLKKYLKKSEENKAKNDKE 103

BLAST of Lsi03G005970 vs. NCBI nr
Match: gi|255562272|ref|XP_002522144.1| (PREDICTED: uncharacterized protein LOC8273856 [Ricinus communis])

HSP 1 Score: 92.8 bits (229), Expect = 4.5e-16
Identity = 59/96 (61.46%), Postives = 72/96 (75.00%), Query Frame = 1

Query: 25  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAV 84
           MSSI QS+LMAL VT+NKFASSNV SVQR +A+K  + T+ +  TA    GRRG+LLSA+
Sbjct: 1   MSSISQSVLMALTVTVNKFASSNVHSVQRREASKKSSPTSGSATTAFPIFGRRGILLSAL 60

Query: 85  ASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE 121
               AA P    DS+TELLK+YLKKSE+N+ KNDKE
Sbjct: 61  ---VAAYPVN--DSKTELLKKYLKKSEENRTKNDKE 91

BLAST of Lsi03G005970 vs. NCBI nr
Match: gi|657951247|ref|XP_008351778.1| (PREDICTED: uncharacterized protein LOC103415213 [Malus domestica])

HSP 1 Score: 92.0 bits (227), Expect = 7.6e-16
Identity = 62/96 (64.58%), Postives = 73/96 (76.04%), Query Frame = 1

Query: 25  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPPTTTTAATATAGSAIGRRGLLLSAV 84
           MSSIGQSILMAL VT+NKFASSNVQ+V R Q  K P  +T+AT+T  + IGRRGLLLSA+
Sbjct: 1   MSSIGQSILMALTVTVNKFASSNVQAVHRKQ-KKAPKKSTSATST--NDIGRRGLLLSAL 60

Query: 85  ASTAAAAPEEAVDSRTELLKRYLKKSEDNKEKNDKE 121
            +T   +     DS  ELLK+YLKKSE+NK KNDKE
Sbjct: 61  VATPPLS-----DSGAELLKKYLKKSEENKAKNDKE 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A061E0K5_THECC2.4e-1660.19Cell cycle progression protein 1 OS=Theobroma cacao GN=TCM_007250 PE=4 SV=1[more]
B9S828_RICCO3.1e-1661.46Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1384420 PE=4 SV=1[more]
W9R137_9ROSA4.5e-1562.50Uncharacterized protein OS=Morus notabilis GN=L484_011132 PE=4 SV=1[more]
B9GIB3_POPTR7.7e-1557.29Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s29940g PE=4 SV=1[more]
A0A0B0PWM0_GOSAR1.0e-1459.81Uncharacterized protein OS=Gossypium arboreum GN=F383_09324 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G49975.11.3e-1351.04 INVOLVED IN: photosynthesis[more]
Match NameE-valueIdentityDescription
gi|659110103|ref|XP_008455049.1|2.4e-2275.00PREDICTED: uncharacterized protein LOC103495319 [Cucumis melo][more]
gi|449438315|ref|XP_004136934.1|1.6e-2175.00PREDICTED: uncharacterized protein LOC101214221 [Cucumis sativus][more]
gi|590687474|ref|XP_007042674.1|3.4e-1660.19Cell cycle progression protein 1 [Theobroma cacao][more]
gi|255562272|ref|XP_002522144.1|4.5e-1661.46PREDICTED: uncharacterized protein LOC8273856 [Ricinus communis][more]
gi|657951247|ref|XP_008351778.1|7.6e-1664.58PREDICTED: uncharacterized protein LOC103415213 [Malus domestica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009522 photosystem I
cellular_component GO:0042651 thylakoid membrane
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G005970.1Lsi03G005970.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36327FAMILY NOT NAMEDcoord: 26..122
score: 1.1

The following gene(s) are paralogous to this gene:

None