Cp4.1LG04g07370 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG04g07370
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPhotosystem I reaction center subunit N
LocationCp4.1LG04 : 4075090 .. 4075934 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGGGGATATGGACCAAGAAAGCCTCATCTGTTCATCAACCTCATCCACAACCCCAACACTCTCTCATTCCCATGAGCTCCATCGGCCAAAACATCCTGATGGCTCTCGCCCTCACTCTAAACCAATTCGCTTCCTCAAACGTTCAATCCGTCCAGAGAAACAAACCCAAAACGCCACCCACCACCACCGCCACCACCTCCGCCTCCACCTTCGCCAGTTCTGACATCCAACGAAGAGGCCTCCTCTTATCTGCCGCCGTTGCCGCCGCCGTGGACTCCAGAACCGAGCTCCTAAAAAGTGTGCTGCATTAATTCTTCCCTCTGTGTTCCATTTTTGAATGCTCGACTTTCGTTTCAATCCAAACATTTTATGTGTTGTTAGGGTACCTCAAGAAATCCGAAGAAAACAAAGAAAAGAACGACAAGGAGGTAAGTGCTTTTGTAATTTGTAATTTGGATTTGATTAATGTTTTGAAATTTGGGTTATTGGGTTTGTAATTAACAGAGATTGGAGAGTTTCTACAAGCGAAATTACAAAGATTATTTTGAGTTTGTTGAAGGATCTTTGAAGAACAAGGATGAACTTTCTGAAGCTGAGAAAGGTATCATTGAATGGCTTAAGAGAAACAAATAAATGAATTTCCATTCATTCTATCCTTTTCTTTTCATTTCTTCTAATCTCGTCTATCAATTATCATTCTAACGAGGATCGTTCAACGTTACAAATATTTAAAATTTTCTATCTATTAAAATTATTCGTGATATTATTCAATTTGAGCCTAGGGTTCATCAAGAACGCTTTTGTACCAATGAAGTTCCTGTCCTAATTTATACACGGTAGACT

mRNA sequence

GGAGGGGATATGGACCAAGAAAGCCTCATCTGTTCATCAACCTCATCCACAACCCCAACACTCTCTCATTCCCATGAGCTCCATCGGCCAAAACATCCTGATGGCTCTCGCCCTCACTCTAAACCAATTCGCTTCCTCAAACGTTCAATCCGTCCAGAGAAACAAACCCAAAACGCCACCCACCACCACCGCCACCACCTCCGCCTCCACCTTCGCCAGTTCTGACATCCAACGAAGAGGCCTCCTCTTATCTGCCGCCGTTGCCGCCGCCGTGGACTCCAGAACCGAGCTCCTAAAAAGGTACCTCAAGAAATCCGAAGAAAACAAAGAAAAGAACGACAAGGAGAGATTGGAGAGTTTCTACAAGCGAAATTACAAAGATTATTTTGAGTTTGTTGAAGGATCTTTGAAGAACAAGGATGAACTTTCTGAAGCTGAGAAAGGTATCATTGAATGGCTTAAGAGAAACAAATAAATGAATTTCCATTCATTCTATCCTTTTCTTTTCATTTCTTCTAATCTCGTCTATCAATTATCATTCTAACGAGGATCGTTCAACGTTACAAATATTTAAAATTTTCTATCTATTAAAATTATTCGTGATATTATTCAATTTGAGCCTAGGGTTCATCAAGAACGCTTTTGTACCAATGAAGTTCCTGTCCTAATTTATACACGGTAGACT

Coding sequence (CDS)

ATGAGCTCCATCGGCCAAAACATCCTGATGGCTCTCGCCCTCACTCTAAACCAATTCGCTTCCTCAAACGTTCAATCCGTCCAGAGAAACAAACCCAAAACGCCACCCACCACCACCGCCACCACCTCCGCCTCCACCTTCGCCAGTTCTGACATCCAACGAAGAGGCCTCCTCTTATCTGCCGCCGTTGCCGCCGCCGTGGACTCCAGAACCGAGCTCCTAAAAAGGTACCTCAAGAAATCCGAAGAAAACAAAGAAAAGAACGACAAGGAGAGATTGGAGAGTTTCTACAAGCGAAATTACAAAGATTATTTTGAGTTTGTTGAAGGATCTTTGAAGAACAAGGATGAACTTTCTGAAGCTGAGAAAGGTATCATTGAATGGCTTAAGAGAAACAAATAA

Protein sequence

MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
BLAST of Cp4.1LG04g07370 vs. TrEMBL
Match: V4RNS8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029547mg PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.8e-33
Identity = 90/139 (64.75%), Postives = 110/139 (79.14%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS 60
           MSSI Q+ILMAL +T+N++AS NVQ+V R + KTP TT A   A+  A  DI RRGLLLS
Sbjct: 1   MSSIDQSILMALTVTVNKYASLNVQAVHRREAKTPKTTGAKAKAAA-AFHDIGRRGLLLS 60

Query: 61  AAVAAAV----DSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNK- 120
           + VAA      DS+T+LL++YLKKSEENK KNDKER++S+YKRNYKDYF+F+EGSLK K 
Sbjct: 61  SVVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKS 120

Query: 121 -DELSEAEKGIIEWLKRNK 134
             ELSE+EKGI+EWLK NK
Sbjct: 121 EQELSESEKGILEWLKTNK 138

BLAST of Cp4.1LG04g07370 vs. TrEMBL
Match: A0A067ERX6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032560mg PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.8e-33
Identity = 90/139 (64.75%), Postives = 110/139 (79.14%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS 60
           MSSI Q+ILMAL +T+N++AS NVQ+V R + KTP TT A   A+  A  DI RRGLLLS
Sbjct: 1   MSSIDQSILMALTVTVNKYASLNVQAVHRREAKTPKTTGAKAKAAA-AFHDIGRRGLLLS 60

Query: 61  AAVAAAV----DSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNK- 120
           + VAA      DS+T+LL++YLKKSEENK KNDKER++S+YKRNYKDYF+F+EGSLK K 
Sbjct: 61  SVVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKS 120

Query: 121 -DELSEAEKGIIEWLKRNK 134
             ELSE+EKGI+EWLK NK
Sbjct: 121 EQELSESEKGILEWLKTNK 138

BLAST of Cp4.1LG04g07370 vs. TrEMBL
Match: A0A0B0PWM0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_09324 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.9e-33
Identity = 89/146 (60.96%), Postives = 109/146 (74.66%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQR---------NKPKTPPTTTATTSASTFASSD 60
           M SI Q++LMAL +T+NQFASSNV +V R         +KPK   T T T +A+    + 
Sbjct: 1   MGSIAQSVLMALTVTVNQFASSNVHAVHRKQGKSPSPTSKPKPTNTKTITAAAANAGDTG 60

Query: 61  IQRRGLLLSAAVAAAV--DSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVE 120
           I RRGL+LSA  +A    DSRTELLK+YLKK+EENK KNDKER+E++Y+RNYKDYFEFVE
Sbjct: 61  IARRGLILSAVASAPQLNDSRTELLKKYLKKTEENKAKNDKERMENYYRRNYKDYFEFVE 120

Query: 121 GSLKNKDE--LSEAEKGIIEWLKRNK 134
           G+LK KDE  LSEAEKGI++WLK NK
Sbjct: 121 GTLKGKDEQQLSEAEKGILDWLKANK 146

BLAST of Cp4.1LG04g07370 vs. TrEMBL
Match: A0A061E0K5_THECC (Cell cycle progression protein 1 OS=Theobroma cacao GN=TCM_007250 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-32
Identity = 89/147 (60.54%), Postives = 110/147 (74.83%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTA----------TTSASTFASS 60
           MSS+ Q++LMAL +T+NQFASSNV +V R + K+PP TT+          T  A+T  + 
Sbjct: 1   MSSMAQSVLMALTVTVNQFASSNVHAVHRKQGKSPPPTTSKPKPSTTTPITAGAATSDTI 60

Query: 61  DIQRRGLLLSAAVAAAV--DSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFV 120
            I RRGL+LSA  AA    DSRTELLK+YLKKSEENK KNDKER +++YKRNYKDYFEFV
Sbjct: 61  GIGRRGLILSAVAAAPQLNDSRTELLKKYLKKSEENKAKNDKERQDNYYKRNYKDYFEFV 120

Query: 121 EGSLKNKDE--LSEAEKGIIEWLKRNK 134
           EG+LK K E  L+E+EKGI++WLK NK
Sbjct: 121 EGTLKGKSEEQLTESEKGILDWLKANK 147

BLAST of Cp4.1LG04g07370 vs. TrEMBL
Match: W9R137_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011132 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-32
Identity = 90/136 (66.18%), Postives = 105/136 (77.21%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS 60
           MSSIGQ+ILMAL +T+N++ASSNVQ+V R + +  PTT  TT        DI RRGL LS
Sbjct: 1   MSSIGQSILMALTVTVNKYASSNVQAVHRKRKR--PTTATTT--------DIGRRGLFLS 60

Query: 61  AAVAA--AVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKD-E 120
             VAA    DSRTELLK+YLKKSEENK KNDKERL S+YKRNYKDYFE VEG+L+ K+ E
Sbjct: 61  TVVAALQVSDSRTELLKKYLKKSEENKAKNDKERLNSYYKRNYKDYFELVEGTLRGKEGE 120

Query: 121 LSEAEKGIIEWLKRNK 134
           LSEAEKGI +WL+ NK
Sbjct: 121 LSEAEKGIRDWLQSNK 126

BLAST of Cp4.1LG04g07370 vs. TAIR10
Match: AT1G49975.1 (AT1G49975.1 INVOLVED IN: photosynthesis)

HSP 1 Score: 132.9 bits (333), Expect = 1.5e-31
Identity = 81/137 (59.12%), Postives = 102/137 (74.45%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS 60
           MSSI Q+ILMAL +T+N++ASSNVQ+V+RN  K    T           +D+ RR +L S
Sbjct: 1   MSSISQSILMALTVTVNKYASSNVQAVRRNDTKRHSLTAPP--------ADLGRRNILFS 60

Query: 61  AA--VAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKD-- 120
           +   +AAA+ S  +LL++YLKK+EENK KNDKERL+SFYKRNYKDYFEFVEGS+K K   
Sbjct: 61  STSFIAAALTSSDQLLQKYLKKTEENKAKNDKERLDSFYKRNYKDYFEFVEGSIKGKTEA 120

Query: 121 ELSEAEKGIIEWLKRNK 134
           ELSE+EK I+EWLK NK
Sbjct: 121 ELSESEKRILEWLKANK 129

BLAST of Cp4.1LG04g07370 vs. NCBI nr
Match: gi|659110103|ref|XP_008455049.1| (PREDICTED: uncharacterized protein LOC103495319 [Cucumis melo])

HSP 1 Score: 176.4 bits (446), Expect = 3.3e-41
Identity = 108/140 (77.14%), Postives = 115/140 (82.14%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS 60
           MSSIGQ+ILMALA+TLN+FASSNVQSVQRNK       TAT S      S I RR LLLS
Sbjct: 1   MSSIGQSILMALAVTLNKFASSNVQSVQRNK------ATATVS------SPIGRRDLLLS 60

Query: 61  -------AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLK 120
                  AA AAAVDSRTELLKRYLKKSEENKEKNDKERLES+YKRNYKDYFEFVEGS+K
Sbjct: 61  TVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDYFEFVEGSVK 120

Query: 121 NKDELSEAEKGIIEWLKRNK 134
           NK+ELSEAEKGI+EWLKRNK
Sbjct: 121 NKNELSEAEKGIVEWLKRNK 128

BLAST of Cp4.1LG04g07370 vs. NCBI nr
Match: gi|449438315|ref|XP_004136934.1| (PREDICTED: uncharacterized protein LOC101214221 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-40
Identity = 106/139 (76.26%), Postives = 115/139 (82.73%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS 60
           MSSIGQ+ILMALA+TLN+FASSNVQSVQRNK     T TAT S      S I RR LLLS
Sbjct: 1   MSSIGQSILMALAVTLNKFASSNVQSVQRNKA----TATATVS------SPIGRRSLLLS 60

Query: 61  ------AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKN 120
                 AA A+ VDSRTELLKRYLKKSEENKEKNDKERLES+YKRNYKDYFEFVEGS+KN
Sbjct: 61  TLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDYFEFVEGSVKN 120

Query: 121 KDELSEAEKGIIEWLKRNK 134
           K+ELSEAEKGI+EWLKR+K
Sbjct: 121 KNELSEAEKGIVEWLKRSK 129

BLAST of Cp4.1LG04g07370 vs. NCBI nr
Match: gi|568867139|ref|XP_006486901.1| (PREDICTED: uncharacterized protein LOC102627099 [Citrus sinensis])

HSP 1 Score: 153.3 bits (386), Expect = 3.0e-34
Identity = 91/139 (65.47%), Postives = 111/139 (79.86%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS 60
           MSSIGQ+ILMAL +T+N++AS NVQ+V R + KTP TT A   A+  A  DI RRGLLLS
Sbjct: 1   MSSIGQSILMALTVTVNKYASLNVQAVHRREAKTPKTTGAKAKAAA-AFQDIGRRGLLLS 60

Query: 61  AAVAAAV----DSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNK- 120
           + VAA      DS+T+LL++YLKKSEENK KNDKER++S+YKRNYKDYF+F+EGSLK K 
Sbjct: 61  SVVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKS 120

Query: 121 -DELSEAEKGIIEWLKRNK 134
             ELSE+EKGI+EWLK NK
Sbjct: 121 EQELSESEKGILEWLKTNK 138

BLAST of Cp4.1LG04g07370 vs. NCBI nr
Match: gi|567860268|ref|XP_006422788.1| (hypothetical protein CICLE_v10029547mg [Citrus clementina])

HSP 1 Score: 150.2 bits (378), Expect = 2.5e-33
Identity = 90/139 (64.75%), Postives = 110/139 (79.14%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS 60
           MSSI Q+ILMAL +T+N++AS NVQ+V R + KTP TT A   A+  A  DI RRGLLLS
Sbjct: 1   MSSIDQSILMALTVTVNKYASLNVQAVHRREAKTPKTTGAKAKAAA-AFHDIGRRGLLLS 60

Query: 61  AAVAAAV----DSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNK- 120
           + VAA      DS+T+LL++YLKKSEENK KNDKER++S+YKRNYKDYF+F+EGSLK K 
Sbjct: 61  SVVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKS 120

Query: 121 -DELSEAEKGIIEWLKRNK 134
             ELSE+EKGI+EWLK NK
Sbjct: 121 EQELSESEKGILEWLKTNK 138

BLAST of Cp4.1LG04g07370 vs. NCBI nr
Match: gi|728849376|gb|KHG28819.1| (hypothetical protein F383_09324 [Gossypium arboreum])

HSP 1 Score: 149.1 bits (375), Expect = 5.6e-33
Identity = 89/146 (60.96%), Postives = 109/146 (74.66%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQR---------NKPKTPPTTTATTSASTFASSD 60
           M SI Q++LMAL +T+NQFASSNV +V R         +KPK   T T T +A+    + 
Sbjct: 1   MGSIAQSVLMALTVTVNQFASSNVHAVHRKQGKSPSPTSKPKPTNTKTITAAAANAGDTG 60

Query: 61  IQRRGLLLSAAVAAAV--DSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVE 120
           I RRGL+LSA  +A    DSRTELLK+YLKK+EENK KNDKER+E++Y+RNYKDYFEFVE
Sbjct: 61  IARRGLILSAVASAPQLNDSRTELLKKYLKKTEENKAKNDKERMENYYRRNYKDYFEFVE 120

Query: 121 GSLKNKDE--LSEAEKGIIEWLKRNK 134
           G+LK KDE  LSEAEKGI++WLK NK
Sbjct: 121 GTLKGKDEQQLSEAEKGILDWLKANK 146

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
V4RNS8_9ROSI1.8e-3364.75Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029547mg PE=4 SV=1[more]
A0A067ERX6_CITSI1.8e-3364.75Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032560mg PE=4 SV=1[more]
A0A0B0PWM0_GOSAR3.9e-3360.96Uncharacterized protein OS=Gossypium arboreum GN=F383_09324 PE=4 SV=1[more]
A0A061E0K5_THECC1.1e-3260.54Cell cycle progression protein 1 OS=Theobroma cacao GN=TCM_007250 PE=4 SV=1[more]
W9R137_9ROSA1.9e-3266.18Uncharacterized protein OS=Morus notabilis GN=L484_011132 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G49975.11.5e-3159.12 INVOLVED IN: photosynthesis[more]
Match NameE-valueIdentityDescription
gi|659110103|ref|XP_008455049.1|3.3e-4177.14PREDICTED: uncharacterized protein LOC103495319 [Cucumis melo][more]
gi|449438315|ref|XP_004136934.1|1.3e-4076.26PREDICTED: uncharacterized protein LOC101214221 [Cucumis sativus][more]
gi|568867139|ref|XP_006486901.1|3.0e-3465.47PREDICTED: uncharacterized protein LOC102627099 [Citrus sinensis][more]
gi|567860268|ref|XP_006422788.1|2.5e-3364.75hypothetical protein CICLE_v10029547mg [Citrus clementina][more]
gi|728849376|gb|KHG28819.1|5.6e-3360.96hypothetical protein F383_09324 [Gossypium arboreum][more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: Cellular Component
TermDefinition
GO:0009522photosystem I
Vocabulary: INTERPRO
TermDefinition
IPR008796PSAN
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009522 photosystem I
cellular_component GO:0042651 thylakoid membrane
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g07370.1Cp4.1LG04g07370.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008796Photosystem I reaction centre subunit N, chloroplasticPFAMPF05479PsaNcoord: 47..95
score: 1.
NoneNo IPR availableunknownCoilCoilcoord: 74..94
scor
NoneNo IPR availablePANTHERPTHR36327FAMILY NOT NAMEDcoord: 2..133
score: 1.2
NoneNo IPR availablePANTHERPTHR36327:SF1SUBFAMILY NOT NAMEDcoord: 2..133
score: 1.2

The following gene(s) are paralogous to this gene:

None