CmaCh11G016940 (gene) Cucurbita maxima (Rimu)

NameCmaCh11G016940
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPhotosystem I reaction center subunit N
LocationCma_Chr11 : 11181777 .. 11182522 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAACCTCATCCACAACCCCAACACTCTCATTCCCATGAGCTCCATCGGCCAAAACATCCTGATGGCTCTCGCCCTCACTCTCAACCAATTCGCTTCCTCAAACGTTCAATCCGTCCAGAGAAACAAACCCAAAACGCCACCCACCACCGCCACCACCTCCGCCAGTTCCGACATCCAACGAAGAGGCCTCCTCTTATCTGCCGCCGTGGCCGCCGCCGTGGACTCCAGAACCGAGCTCCTAAAAAGTGTGCTGCATTAATTCTTCCCTCTGTGTTCCATTTTTTAGTGCTCGACTTTCGTTTGAATCCAAACATTTTATGTGTTGTTAGGGTACCTAAAGAAATCTGAAGAAAACAAAGAAAAGAACGACAAGGAGGTAGGTGTTTTTGTAATTTTAATTTGGATTTGATCAATGTTTTGAAATTTGTGTTATTGGGTTTGTAATTAACAGAGATTGGAGAGTTTCTACAAGCGAAATTACAAAGATTATTTTGAGTTTGTTGAAGGATCTTTGAAGAACAAGGATGAACTCTCTGAAGCTGAGAAAGGTATCATTGAGTGGCTTAAGAGAAACAAATAAATGAATTTCTTCCATCAATTATCATTTTAATGGTGGATCTCGTTCAATTTATCACTTTCACGATATAAAAGGAAAATTGCCATATTTACAAATATTCAAATTTTGCTATCTATTAAAATTATTCGTGATATTATTCAATTTGAGCTTATGGTTCATGAAGATCAC

mRNA sequence

TCAACCTCATCCACAACCCCAACACTCTCATTCCCATGAGCTCCATCGGCCAAAACATCCTGATGGCTCTCGCCCTCACTCTCAACCAATTCGCTTCCTCAAACGTTCAATCCGTCCAGAGAAACAAACCCAAAACGCCACCCACCACCGCCACCACCTCCGCCAGTTCCGACATCCAACGAAGAGGCCTCCTCTTATCTGCCGCCGTGGCCGCCGCCGTGGACTCCAGAACCGAGCTCCTAAAAAGGTACCTAAAGAAATCTGAAGAAAACAAAGAAAAGAACGACAAGGAGAGATTGGAGAGTTTCTACAAGCGAAATTACAAAGATTATTTTGAGTTTGTTGAAGGATCTTTGAAGAACAAGGATGAACTCTCTGAAGCTGAGAAAGGTATCATTGAGTGGCTTAAGAGAAACAAATAAATGAATTTCTTCCATCAATTATCATTTTAATGGTGGATCTCGTTCAATTTATCACTTTCACGATATAAAAGGAAAATTGCCATATTTACAAATATTCAAATTTTGCTATCTATTAAAATTATTCGTGATATTATTCAATTTGAGCTTATGGTTCATGAAGATCAC

Coding sequence (CDS)

ATGAGCTCCATCGGCCAAAACATCCTGATGGCTCTCGCCCTCACTCTCAACCAATTCGCTTCCTCAAACGTTCAATCCGTCCAGAGAAACAAACCCAAAACGCCACCCACCACCGCCACCACCTCCGCCAGTTCCGACATCCAACGAAGAGGCCTCCTCTTATCTGCCGCCGTGGCCGCCGCCGTGGACTCCAGAACCGAGCTCCTAAAAAGGTACCTAAAGAAATCTGAAGAAAACAAAGAAAAGAACGACAAGGAGAGATTGGAGAGTTTCTACAAGCGAAATTACAAAGATTATTTTGAGTTTGTTGAAGGATCTTTGAAGAACAAGGATGAACTCTCTGAAGCTGAGAAAGGTATCATTGAGTGGCTTAAGAGAAACAAATAA

Protein sequence

MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTATTSASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
BLAST of CmaCh11G016940 vs. TrEMBL
Match: W9R137_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011132 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-33
Identity = 91/131 (69.47%), Postives = 107/131 (81.68%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTATTSASSDIQRRGLLLSAAVAA 60
           MSSIGQ+ILMAL +T+N++ASSNVQ+V R + +  PTTATT+   DI RRGL LS  VAA
Sbjct: 1   MSSIGQSILMALTVTVNKYASSNVQAVHRKRKR--PTTATTT---DIGRRGLFLSTVVAA 60

Query: 61  --AVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKD-ELSEAE 120
               DSRTELLK+YLKKSEENK KNDKERL S+YKRNYKDYFE VEG+L+ K+ ELSEAE
Sbjct: 61  LQVSDSRTELLKKYLKKSEENKAKNDKERLNSYYKRNYKDYFELVEGTLRGKEGELSEAE 120

Query: 121 KGIIEWLKRNK 129
           KGI +WL+ NK
Sbjct: 121 KGIRDWLQSNK 126

BLAST of CmaCh11G016940 vs. TrEMBL
Match: A0A151U7Q6_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_007969 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.9e-33
Identity = 88/133 (66.17%), Postives = 108/133 (81.20%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKP-KTPPTTATTSASSDIQRRGLLLSAAVA 60
           MSSIGQ+ILMAL +T+N++ASSN+Q+VQ   P KT PTT TT       RRGLLLSAA+A
Sbjct: 1   MSSIGQSILMALTVTVNKYASSNLQAVQGKAPNKTTPTTLTT-------RRGLLLSAAIA 60

Query: 61  AAV--DSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKD--ELSE 120
                DSRT+LLK+Y KKSEENKEKNDKERLES+YKRNYKDYFE +EG+LK K+  +LS+
Sbjct: 61  TTQVPDSRTQLLKKYQKKSEENKEKNDKERLESYYKRNYKDYFELMEGTLKRKEDGQLSD 120

Query: 121 AEKGIIEWLKRNK 129
            EKGI++WL++NK
Sbjct: 121 TEKGILDWLQKNK 126

BLAST of CmaCh11G016940 vs. TrEMBL
Match: V4RNS8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029547mg PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.9e-33
Identity = 88/138 (63.77%), Postives = 108/138 (78.26%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTAT----TSASSDIQRRGLLLSA 60
           MSSI Q+ILMAL +T+N++AS NVQ+V R + KTP TT       +A  DI RRGLLLS+
Sbjct: 1   MSSIDQSILMALTVTVNKYASLNVQAVHRREAKTPKTTGAKAKAAAAFHDIGRRGLLLSS 60

Query: 61  AVAAAV----DSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNK-- 120
            VAA      DS+T+LL++YLKKSEENK KNDKER++S+YKRNYKDYF+F+EGSLK K  
Sbjct: 61  VVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKSE 120

Query: 121 DELSEAEKGIIEWLKRNK 129
            ELSE+EKGI+EWLK NK
Sbjct: 121 QELSESEKGILEWLKTNK 138

BLAST of CmaCh11G016940 vs. TrEMBL
Match: A0A067ERX6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032560mg PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.9e-33
Identity = 88/138 (63.77%), Postives = 108/138 (78.26%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTAT----TSASSDIQRRGLLLSA 60
           MSSI Q+ILMAL +T+N++AS NVQ+V R + KTP TT       +A  DI RRGLLLS+
Sbjct: 1   MSSIDQSILMALTVTVNKYASLNVQAVHRREAKTPKTTGAKAKAAAAFHDIGRRGLLLSS 60

Query: 61  AVAAAV----DSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNK-- 120
            VAA      DS+T+LL++YLKKSEENK KNDKER++S+YKRNYKDYF+F+EGSLK K  
Sbjct: 61  VVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKSE 120

Query: 121 DELSEAEKGIIEWLKRNK 129
            ELSE+EKGI+EWLK NK
Sbjct: 121 QELSESEKGILEWLKTNK 138

BLAST of CmaCh11G016940 vs. TrEMBL
Match: A0A061E0K5_THECC (Cell cycle progression protein 1 OS=Theobroma cacao GN=TCM_007250 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 9.3e-32
Identity = 88/147 (59.86%), Postives = 107/147 (72.79%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTT---------------ATTSASS 60
           MSS+ Q++LMAL +T+NQFASSNV +V R + K+PP T               A TS + 
Sbjct: 1   MSSMAQSVLMALTVTVNQFASSNVHAVHRKQGKSPPPTTSKPKPSTTTPITAGAATSDTI 60

Query: 61  DIQRRGLLLSAAVAAAV--DSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFV 120
            I RRGL+LSA  AA    DSRTELLK+YLKKSEENK KNDKER +++YKRNYKDYFEFV
Sbjct: 61  GIGRRGLILSAVAAAPQLNDSRTELLKKYLKKSEENKAKNDKERQDNYYKRNYKDYFEFV 120

Query: 121 EGSLKNKDE--LSEAEKGIIEWLKRNK 129
           EG+LK K E  L+E+EKGI++WLK NK
Sbjct: 121 EGTLKGKSEEQLTESEKGILDWLKANK 147

BLAST of CmaCh11G016940 vs. TAIR10
Match: AT1G49975.1 (AT1G49975.1 INVOLVED IN: photosynthesis)

HSP 1 Score: 136.7 bits (343), Expect = 9.8e-33
Identity = 82/132 (62.12%), Postives = 103/132 (78.03%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTATTSASSDIQRRGLLLSAA--V 60
           MSSI Q+ILMAL +T+N++ASSNVQ+V+RN  K    TA  +   D+ RR +L S+   +
Sbjct: 1   MSSISQSILMALTVTVNKYASSNVQAVRRNDTKRHSLTAPPA---DLGRRNILFSSTSFI 60

Query: 61  AAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKD--ELSEA 120
           AAA+ S  +LL++YLKK+EENK KNDKERL+SFYKRNYKDYFEFVEGS+K K   ELSE+
Sbjct: 61  AAALTSSDQLLQKYLKKTEENKAKNDKERLDSFYKRNYKDYFEFVEGSIKGKTEAELSES 120

Query: 121 EKGIIEWLKRNK 129
           EK I+EWLK NK
Sbjct: 121 EKRILEWLKANK 129

BLAST of CmaCh11G016940 vs. NCBI nr
Match: gi|659110103|ref|XP_008455049.1| (PREDICTED: uncharacterized protein LOC103495319 [Cucumis melo])

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-42
Identity = 107/135 (79.26%), Postives = 115/135 (85.19%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTATTSASSDIQRRGLLLS----- 60
           MSSIGQ+ILMALA+TLN+FASSNVQSVQRNK       AT + SS I RR LLLS     
Sbjct: 1   MSSIGQSILMALAVTLNKFASSNVQSVQRNK-------ATATVSSPIGRRDLLLSTVAPA 60

Query: 61  --AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDEL 120
             AA AAAVDSRTELLKRYLKKSEENKEKNDKERLES+YKRNYKDYFEFVEGS+KNK+EL
Sbjct: 61  STAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDYFEFVEGSVKNKNEL 120

Query: 121 SEAEKGIIEWLKRNK 129
           SEAEKGI+EWLKRNK
Sbjct: 121 SEAEKGIVEWLKRNK 128

BLAST of CmaCh11G016940 vs. NCBI nr
Match: gi|449438315|ref|XP_004136934.1| (PREDICTED: uncharacterized protein LOC101214221 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 3.7e-42
Identity = 105/134 (78.36%), Postives = 115/134 (85.82%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTATTSASSDIQRRGLLLS----- 60
           MSSIGQ+ILMALA+TLN+FASSNVQSVQRNK      TAT + SS I RR LLLS     
Sbjct: 1   MSSIGQSILMALAVTLNKFASSNVQSVQRNK-----ATATATVSSPIGRRSLLLSTLAPA 60

Query: 61  -AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELS 120
            AA A+ VDSRTELLKRYLKKSEENKEKNDKERLES+YKRNYKDYFEFVEGS+KNK+ELS
Sbjct: 61  SAAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDYFEFVEGSVKNKNELS 120

Query: 121 EAEKGIIEWLKRNK 129
           EAEKGI+EWLKR+K
Sbjct: 121 EAEKGIVEWLKRSK 129

BLAST of CmaCh11G016940 vs. NCBI nr
Match: gi|568867139|ref|XP_006486901.1| (PREDICTED: uncharacterized protein LOC102627099 [Citrus sinensis])

HSP 1 Score: 151.8 bits (382), Expect = 8.4e-34
Identity = 89/138 (64.49%), Postives = 109/138 (78.99%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTAT----TSASSDIQRRGLLLSA 60
           MSSIGQ+ILMAL +T+N++AS NVQ+V R + KTP TT       +A  DI RRGLLLS+
Sbjct: 1   MSSIGQSILMALTVTVNKYASLNVQAVHRREAKTPKTTGAKAKAAAAFQDIGRRGLLLSS 60

Query: 61  AVAAAV----DSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNK-- 120
            VAA      DS+T+LL++YLKKSEENK KNDKER++S+YKRNYKDYF+F+EGSLK K  
Sbjct: 61  VVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKSE 120

Query: 121 DELSEAEKGIIEWLKRNK 129
            ELSE+EKGI+EWLK NK
Sbjct: 121 QELSESEKGILEWLKTNK 138

BLAST of CmaCh11G016940 vs. NCBI nr
Match: gi|703068731|ref|XP_010088316.1| (hypothetical protein L484_011132 [Morus notabilis])

HSP 1 Score: 150.6 bits (379), Expect = 1.9e-33
Identity = 91/131 (69.47%), Postives = 107/131 (81.68%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTATTSASSDIQRRGLLLSAAVAA 60
           MSSIGQ+ILMAL +T+N++ASSNVQ+V R + +  PTTATT+   DI RRGL LS  VAA
Sbjct: 1   MSSIGQSILMALTVTVNKYASSNVQAVHRKRKR--PTTATTT---DIGRRGLFLSTVVAA 60

Query: 61  --AVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKD-ELSEAE 120
               DSRTELLK+YLKKSEENK KNDKERL S+YKRNYKDYFE VEG+L+ K+ ELSEAE
Sbjct: 61  LQVSDSRTELLKKYLKKSEENKAKNDKERLNSYYKRNYKDYFELVEGTLRGKEGELSEAE 120

Query: 121 KGIIEWLKRNK 129
           KGI +WL+ NK
Sbjct: 121 KGIRDWLQSNK 126

BLAST of CmaCh11G016940 vs. NCBI nr
Match: gi|1012364078|gb|KYP75261.1| (hypothetical protein KK1_007969 [Cajanus cajan])

HSP 1 Score: 148.7 bits (374), Expect = 7.1e-33
Identity = 88/133 (66.17%), Postives = 108/133 (81.20%), Query Frame = 1

Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKP-KTPPTTATTSASSDIQRRGLLLSAAVA 60
           MSSIGQ+ILMAL +T+N++ASSN+Q+VQ   P KT PTT TT       RRGLLLSAA+A
Sbjct: 1   MSSIGQSILMALTVTVNKYASSNLQAVQGKAPNKTTPTTLTT-------RRGLLLSAAIA 60

Query: 61  AAV--DSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKD--ELSE 120
                DSRT+LLK+Y KKSEENKEKNDKERLES+YKRNYKDYFE +EG+LK K+  +LS+
Sbjct: 61  TTQVPDSRTQLLKKYQKKSEENKEKNDKERLESYYKRNYKDYFELMEGTLKRKEDGQLSD 120

Query: 121 AEKGIIEWLKRNK 129
            EKGI++WL++NK
Sbjct: 121 TEKGILDWLQKNK 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
W9R137_9ROSA1.3e-3369.47Uncharacterized protein OS=Morus notabilis GN=L484_011132 PE=4 SV=1[more]
A0A151U7Q6_CAJCA4.9e-3366.17Uncharacterized protein OS=Cajanus cajan GN=KK1_007969 PE=4 SV=1[more]
V4RNS8_9ROSI4.9e-3363.77Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029547mg PE=4 SV=1[more]
A0A067ERX6_CITSI4.9e-3363.77Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032560mg PE=4 SV=1[more]
A0A061E0K5_THECC9.3e-3259.86Cell cycle progression protein 1 OS=Theobroma cacao GN=TCM_007250 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G49975.19.8e-3362.12 INVOLVED IN: photosynthesis[more]
Match NameE-valueIdentityDescription
gi|659110103|ref|XP_008455049.1|1.3e-4279.26PREDICTED: uncharacterized protein LOC103495319 [Cucumis melo][more]
gi|449438315|ref|XP_004136934.1|3.7e-4278.36PREDICTED: uncharacterized protein LOC101214221 [Cucumis sativus][more]
gi|568867139|ref|XP_006486901.1|8.4e-3464.49PREDICTED: uncharacterized protein LOC102627099 [Citrus sinensis][more]
gi|703068731|ref|XP_010088316.1|1.9e-3369.47hypothetical protein L484_011132 [Morus notabilis][more]
gi|1012364078|gb|KYP75261.1|7.1e-3366.17hypothetical protein KK1_007969 [Cajanus cajan][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008796PSAN
Vocabulary: Cellular Component
TermDefinition
GO:0009522photosystem I
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009522 photosystem I
cellular_component GO:0042651 thylakoid membrane
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G016940.1CmaCh11G016940.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008796Photosystem I reaction centre subunit N, chloroplasticPFAMPF05479PsaNcoord: 43..90
score: 7.
NoneNo IPR availableunknownCoilCoilcoord: 69..89
scor
NoneNo IPR availablePANTHERPTHR36327FAMILY NOT NAMEDcoord: 2..128
score: 3.1
NoneNo IPR availablePANTHERPTHR36327:SF1SUBFAMILY NOT NAMEDcoord: 2..128
score: 3.1

The following gene(s) are paralogous to this gene:

None