Carg23043 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23043
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Photosystem I reaction centre subunit N
Location	Cucurbita_argyrosperma_scaffold_163 : 141561 .. 142149 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTCCATCGGCCAAAACATCCTGATGGCTCTCGCCCTCACTCTCAACCAATTCGCTTCCTCAAACGTCCAATCCGTCCAGAGAAACAAACCCAAAACGCCACCCACCACCACCGCCACCACCTCCGCCTCCACCTCCGCCAGTTCTGACATTCAACGAAGAGGCCTCATCTTATCTGCCGCCGTGGCCGCCGCCGTGGACTCCAGAACCGAGCTCCTAAAAAGTGTGCTGCATTAATTCTTCTCTCTGTGTTCCATTTTTGAATGCTCGACTTTCGTTTCAATCCAAACATTTTATGTGTTGTTAGGGTACCTAAAGAAATCTGAAGAAAACAAAGAAAAGAACGACAAGGAGGTAAGTGTTCTTGTAATTTGTAATTTGTAATTTAGATTTGATCAATGTTTTGAAATTTGTGTTATTGGGTTTGTAATTAACAGAGATTGGAGAGTTTCTACAAGCGAAATTACAAAGATTATTTTGAGTTTGTTGAAGGATCTTTGAAGAACAAGGATGAACTTTCTGAAGCTGAGAAAGGTATCATTGAGTGGCTTAAGAGAAACAAATAAATGAATTTCTTCTATCAATT

mRNA sequence

ATGAGCTCCATCGGCCAAAACATCCTGATGGCTCTCGCCCTCACTCTCAACCAATTCGCTTCCTCAAACGTCCAATCCGTCCAGAGAAACAAACCCAAAACGCCACCCACCACCACCGCCACCACCTCCGCCTCCACCTCCGCCAGTTCTGACATTCAACGAAGAGGCCTCATCTTATCTGCCGCCGTGGCCGCCGCCGTGGACTCCAGAACCGAGCTCCTAAAAAGGTACCTAAAGAAATCTGAAGAAAACAAAGAAAAGAACGACAAGGAGAGATTGGAGAGTTTCTACAAGCGAAATTACAAAGATTATTTTGAGTTTGTTGAAGGATCTTTGAAGAACAAGGATGAACTTTCTGAAGCTGAGAAAGGTATCATTGAGTGGCTTAAGAGAAACAAATAAATGAATTTCTTCTATCAATT

Coding sequence (CDS)

ATGAGCTCCATCGGCCAAAACATCCTGATGGCTCTCGCCCTCACTCTCAACCAATTCGCTTCCTCAAACGTCCAATCCGTCCAGAGAAACAAACCCAAAACGCCACCCACCACCACCGCCACCACCTCCGCCTCCACCTCCGCCAGTTCTGACATTCAACGAAGAGGCCTCATCTTATCTGCCGCCGTGGCCGCCGCCGTGGACTCCAGAACCGAGCTCCTAAAAAGGTACCTAAAGAAATCTGAAGAAAACAAAGAAAAGAACGACAAGGAGAGATTGGAGAGTTTCTACAAGCGAAATTACAAAGATTATTTTGAGTTTGTTGAAGGATCTTTGAAGAACAAGGATGAACTTTCTGAAGCTGAGAAAGGTATCATTGAGTGGCTTAAGAGAAACAAATAA

Protein sequence

MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK

Homology

[Close]

BLAST of Carg23043 vs. NCBI nr
Match: XP_022927848.1 (uncharacterized protein LOC111434615 [Cucurbita moschata])

HSP 1 Score: 114.0 bits (284), Expect = 3.9e-22
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MSSIGQNILMALALTLNQFASSNVQSVQRN XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESFYKRNYKDYFEFVEGSLKNKDELSE 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESFYKRNYKDYFEFVEGSLKNKDELSE
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESFYKRNYKDYFEFVEGSLKNKDELSE 120

Query: 121 AEKGIIEWLKRNK 134
           AEKGIIEWLKRNK
Sbjct: 121 AEKGIIEWLKRNK 133

[Close]

BLAST of Carg23043 vs. NCBI nr
Match: XP_023531124.1 (uncharacterized protein LOC111793462 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.0 bits (284), Expect = 3.9e-22
Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MSSIGQNILMALALTLNQFASSNVQSVQRN XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESFYKRNYKDYFEFVEGSLKNKDELSE 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LESFYKRNYKDYFEFVEGSLKNKDELSE
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLESFYKRNYKDYFEFVEGSLKNKDELSE 120

Query: 121 AEKGIIEWLKRNK 134
           AEKGIIEWLKRNK
Sbjct: 121 AEKGIIEWLKRNK 133

[Close]

BLAST of Carg23043 vs. NCBI nr
Match: XP_022989008.1 (uncharacterized protein LOC111486201 [Cucurbita maxima])

HSP 1 Score: 109.8 bits (273), Expect = 7.4e-21
Identity = 120/133 (90.23%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MSSIGQNILMALALTLNQFASSNVQSVQRN        XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MSSIGQNILMALALTLNQFASSNVQSVQRN-----KPKXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESFYKRNYKDYFEFVEGSLKNKDELSE 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXX     LESFYKRNYKDYFEFVEGSLKNKDELSE
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE 120

Query: 121 AEKGIIEWLKRNK 134
           AEKGIIEWLKRNK
Sbjct: 121 AEKGIIEWLKRNK 128

[Close]

BLAST of Carg23043 vs. NCBI nr
Match: XP_008455049.1 (PREDICTED: uncharacterized protein LOC103495319 [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 4.5e-18
Identity = 79/133 (59.40%), Postives = 86/133 (64.66%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MSSIGQ+ILMALA+TLN+FASSNVQSVQRN                             X
Sbjct: 1   MSSIGQSILMALAVTLNKFASSNVQSVQRN-----KATATVSSPIGRRDLLLSTVAPASX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESFYKRNYKDYFEFVEGSLKNKDELSE 120
           XXXXXXXX             XXXXXX     LES+YKRNYKDYFEFVEGS+KNK+ELSE
Sbjct: 61  XXXXXXXXSRTELLKRYLKKSXXXXXXNDKERLESYYKRNYKDYFEFVEGSVKNKNELSE 120

Query: 121 AEKGIIEWLKRNK 134
           AEKGI+EWLKRNK
Sbjct: 121 AEKGIVEWLKRNK 128

[Close]

BLAST of Carg23043 vs. NCBI nr
Match: XP_004136934.1 (PREDICTED: uncharacterized protein LOC101214221 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17
Identity = 80/133 (60.15%), Postives = 88/133 (66.17%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MSSIGQ+ILMALA+TLN+FASSNVQSVQRN                              
Sbjct: 1   MSSIGQSILMALAVTLNKFASSNVQSVQRN----KATATATVSSPIGRRSLLLSTLAPAS 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESFYKRNYKDYFEFVEGSLKNKDELSE 120
            XXXXX            XXXXXXXXXXXX  LES+YKRNYKDYFEFVEGS+KNK+ELSE
Sbjct: 61  AXXXXXVDSRTELLKRYLXXXXXXXXXXXXERLESYYKRNYKDYFEFVEGSVKNKNELSE 120

Query: 121 AEKGIIEWLKRNK 134
           AEKGI+EWLKR+K
Sbjct: 121 AEKGIVEWLKRSK 129

[Close]

BLAST of Carg23043 vs. TAIR10
Match: AT1G49975.1 (INVOLVED IN: photosynthesis)

HSP 1 Score: 77.0 bits (188), Expect = 9.6e-15
Identity = 54/135 (40.00%), Postives = 65/135 (48.15%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MSSI Q+ILMAL +T+N++ASSNVQ+V+RN                              
Sbjct: 1   MSSISQSILMALTVTVNKYASSNVQAVRRN------DTKRHSLTAPPADLGRRNILFSST 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESFYKRNYKDYFEFVEGSLKNKD--EL 120
                                           L+SFYKRNYKDYFEFVEGS+K K   EL
Sbjct: 61  SFIAAALTSSDQLLQKYLKKTEENKAKNDKERLDSFYKRNYKDYFEFVEGSIKGKTEAEL 120

Query: 121 SEAEKGIIEWLKRNK 134
           SE+EK I+EWLK NK
Sbjct: 121 SESEKRILEWLKANK 129

[Close]

BLAST of Carg23043 vs. TrEMBL
Match: tr|A0A1S3C176|A0A1S3C176_CUCME (uncharacterized protein LOC103495319 OS=Cucumis melo OX=3656 GN=LOC103495319 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.0e-18
Identity = 79/133 (59.40%), Postives = 86/133 (64.66%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MSSIGQ+ILMALA+TLN+FASSNVQSVQRN                             X
Sbjct: 1   MSSIGQSILMALAVTLNKFASSNVQSVQRN-----KATATVSSPIGRRDLLLSTVAPASX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESFYKRNYKDYFEFVEGSLKNKDELSE 120
           XXXXXXXX             XXXXXX     LES+YKRNYKDYFEFVEGS+KNK+ELSE
Sbjct: 61  XXXXXXXXSRTELLKRYLKKSXXXXXXNDKERLESYYKRNYKDYFEFVEGSVKNKNELSE 120

Query: 121 AEKGIIEWLKRNK 134
           AEKGI+EWLKRNK
Sbjct: 121 AEKGIVEWLKRNK 128

[Close]

BLAST of Carg23043 vs. TrEMBL
Match: tr|A0A2I4HLI8|A0A2I4HLI8_9ROSI (uncharacterized protein LOC109019213 OS=Juglans regia OX=51240 GN=LOC109019213 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.1e-12
Identity = 80/134 (59.70%), Postives = 93/134 (69.40%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MSSIGQ+ILMAL +T+N+FASSNVQ+V R    XXXXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 1   MSSIGQSILMALTVTVNRFASSNVQAVHR----XXXXXXXXXXXXXXXXXXXXXXXXXXL 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESFYKRNYKDYFEFVEGSLK-NKDELS 120
                                           L+S+YKRNYKDYFEFVEG+ K N+++LS
Sbjct: 61  VAAPQVADSRTDLLKQYLKKSEENKSKNDKERLDSYYKRNYKDYFEFVEGASKGNQEQLS 120

Query: 121 EAEKGIIEWLKRNK 134
           EAEKGII+WL+RNK
Sbjct: 121 EAEKGIIDWLQRNK 130

[Close]

BLAST of Carg23043 vs. TrEMBL
Match: tr|A0A059BC25|A0A059BC25_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G01203 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.1e-12
Identity = 53/134 (39.55%), Postives = 65/134 (48.51%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           M+SI QN+LMAL  T+N+FASSNVQ+V R                               
Sbjct: 1   MASIAQNVLMALTATVNKFASSNVQAVPRG---EGWRRKPRATPADSCQSVAGTRRCLLL 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESFYKRNYKDYFEFVEGSLKNK-DELS 120
                                           LES+YKRNYKDYFEFVEGSL+NK D+L+
Sbjct: 61  LSAVAVGDSRTEILEKYLKKSEENKSKNDKERLESYYKRNYKDYFEFVEGSLRNKTDQLT 120

Query: 121 EAEKGIIEWLKRNK 134
           E+EKGI++WLK NK
Sbjct: 121 ESEKGILDWLKSNK 131

[Close]

BLAST of Carg23043 vs. TrEMBL
Match: tr|A0A0A0K7Q0|A0A0A0K7Q0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070810 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.1e-12
Identity = 36/41 (87.80%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 93  LESFYKRNYKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK 134
           LES+YKRNYKDYFEFVEGS+KNK+ELSEAEKGI+EWLKR+K
Sbjct: 20  LESYYKRNYKDYFEFVEGSVKNKNELSEAEKGIVEWLKRSK 60

[Close]

BLAST of Carg23043 vs. TrEMBL
Match: tr|A0A087H1F9|A0A087H1F9_ARAAL (Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA4G060300 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.1e-11
Identity = 78/135 (57.78%), Postives = 88/135 (65.19%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MSSI Q+ILMAL +T+N++ASSNVQ+V+RN                       XXXXXXX
Sbjct: 1   MSSISQSILMALTVTVNKYASSNVQAVRRN-----DSKRNSLTAPNADLGRRNXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESFYKRNYKDYFEFVEGSLKNKD--EL 120
           XXXXXXXXXXXXXXXX                L+SFYKRNYKDYFEFVEGSLK K   EL
Sbjct: 61  XXXXXXXXXXXXXXXXYLKKTEENKAKNDKERLDSFYKRNYKDYFEFVEGSLKGKTEAEL 120

Query: 121 SEAEKGIIEWLKRNK 134
           SE+EK I+EWLK NK
Sbjct: 121 SESEKKILEWLKANK 130

The following BLAST results are available for this feature:

BLAST of Carg23043 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927848.1	3.9e-22	99.25	uncharacterized protein LOC111434615 [Cucurbita moschata]	[more]
XP_023531124.1	3.9e-22	98.50	uncharacterized protein LOC111793462 [Cucurbita pepo subsp. pepo]	[more]
XP_022989008.1	7.4e-21	90.23	uncharacterized protein LOC111486201 [Cucurbita maxima]	[more]
XP_008455049.1	4.5e-18	59.40	PREDICTED: uncharacterized protein LOC103495319 [Cucumis melo]	[more]
XP_004136934.1	1.7e-17	60.15	PREDICTED: uncharacterized protein LOC101214221 [Cucumis sativus]	[more]

BLAST of Carg23043 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49975.1	9.6e-15	40.00	INVOLVED IN: photosynthesis	[more]

BLAST of Carg23043 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg23043 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C176\|A0A1S3C176_CUCME	3.0e-18	59.40	uncharacterized protein LOC103495319 OS=Cucumis melo OX=3656 GN=LOC103495319 PE=...	[more]
tr\|A0A2I4HLI8\|A0A2I4HLI8_9ROSI	7.1e-12	59.70	uncharacterized protein LOC109019213 OS=Juglans regia OX=51240 GN=LOC109019213 P...	[more]
tr\|A0A059BC25\|A0A059BC25_EUCGR	7.1e-12	39.55	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G01203 PE=4 SV...	[more]
tr\|A0A0A0K7Q0\|A0A0A0K7Q0_CUCSA	7.1e-12	87.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070810 PE=4 SV=1	[more]
tr\|A0A087H1F9\|A0A087H1F9_ARAAL	2.1e-11	57.78	Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA4G060300 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I

Vocabulary: **INTERPRO**
Term	Definition
IPR008796	PSAN

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23043-RA	Carg23043-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 74..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..50
None	No IPR available	PANTHER	PTHR36327	FAMILY NOT NAMED	coord: 1..133
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	PFAM	PF05479	PsaN	coord: 43..95 e-value: 6.7E-6 score: 26.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23043	Csa7G070810	Cucumber (Chinese Long) v2	carcuB0751
Carg23043	MELO3C018528	Melon (DHL92) v3.5.1	carmeB0726
Carg23043	ClCG02G007100	Watermelon (Charleston Gray)	carwcgB0711
Carg23043	CSPI07G06760	Wild cucumber (PI 183967)	carcpiB0767
Carg23043	Cucsa.219060	Cucumber (Gy14) v1	carcgyB0825
Carg23043	CmaCh11G016940	Cucurbita maxima (Rimu)	carcmaB1025
Carg23043	CmoCh11G014260	Cucurbita moschata (Rifu)	carcmoB0997
Carg23043	Lsi03G005970	Bottle gourd (USVL1VR-Ls)	carlsiB672
Carg23043	Cp4.1LG04g07370	Cucurbita pepo (Zucchini)	carcpeB1033
Carg23043	CsGy7G006300	Cucumber (Gy14) v2	carcgybB0729
Carg23043	MELO3C018528.2	Melon (DHL92) v3.6.1	carmedB0737
Carg23043	CsaV3_7G007730	Cucumber (Chinese Long) v3	carcucB0770
Carg23043	Cla97C02G033940	Watermelon (97103) v2	carwmbB0766

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23043	Silver-seed gourd	carcarB404
Carg23043	Silver-seed gourd	carcarB456
Carg23043	Cucurbita maxima (Rimu)	carcmaB1026
Carg23043	Cucurbita maxima (Rimu)	carcmaB1027
Carg23043	Cucurbita moschata (Rifu)	carcmoB0998
Carg23043	Cucurbita moschata (Rifu)	carcmoB0999
Carg23043	Cucurbita pepo (Zucchini)	carcpeB1032
Carg23043	Cucurbita pepo (Zucchini)	carcpeB1031
Carg23043	Bottle gourd (USVL1VR-Ls)	carlsiB673
Carg23043	Watermelon (97103) v1	carwmB0733