Cla97C02G033940 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G033940
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Photosystem I reaction center subunit N
Location	Cla97Chr02 : 7650895 .. 7652844 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCCATCGGCCAAAGCATTCTGATGGCCCTCGCCGTCACTCTCAACAAATTCGCTTCCTCCAACGTTCAATCCGTTCAGAGAAACCAAGCCAACAAGCCTCGCACCGCCACCACCACTGCCACCGCCGGTTCTGCAAATGGAAGAAGAGGCCTCCTCTTGTCTGCCATTGCCGCCGTGGCTGCCGCTCCCGAAGAAGCCGTGGACTCCAGAACCGAGCTGCTAAAAAGTGGTGCATTCTTCTCTTTGTTCTTTTTTTTGAGTTTTAATTTCGTTTCCTCAAATTTGTATCTTCTAGTTGCTTTTAAATATAACAAAATAAGTCAAAATATTTACAAATATAAAAAATATTATCAGATATCAATATCTATCGTTGAATTTATTATTGTCTATCACTAATTAATAGATCGTAACATTTTACTATATTTTTAATATTTTTAATAATTTTGTTATTTAAAATAATAATTTTTTTTACTCAAAAAAATCTTAATTTTCTTCCCAAAATTTTGATTTTTTTTCTTTTAGAGTTTATTAGTTCTGCTTTTGAAAATTTTGAATGGTATTAAAGAAAGTTTTAATTAATTTTGAGAGAAGTATCGCAATGAGTTCATCTATTTTTGTTATCCCATTCCAATTGTTCCCTTTTTTCAAGAATATCGGAGCTGTTGTGGATAAACCAAAATTTATTTATTTATTTTAAAAAATAACTCAGTGAATAAGTGGGTGTGGATGCTATTTTTTTTTTTTTTTTTTAAAAAAAAGAAGAAGAAAAGAAAAGAAAATGTAGTTTCGTATAATTTTCGTCCATCTTTACCACCTTACAAATCGGTTTCATGATTTCTTATAAAAGTTGAGTTTTAAATTAGGTATGTACATATTACCTATGAAAAGTCATACGGTAGTAGATTCAAAAAATCATAATAATGTACTTGTAATTTTGTTAAAAAATGTTTCTTTTTGTTTAAATAAATAATTTGTCAGCATTGCATATTATTGAATAAGAATGACTAATAATTGATTGACTTTTTTAGTAAAAATTTTTAGAGTTTTAGTTAAATTACAAGTTTAGTTTACAATATTTTTAATCTTTATATATTTAGAGAGTGTTAGGGTCGTTGAGTTGAGTTATGAACTCTGGAGTTAATATATTAGAGTTAGAAAGTCATGTTTGAAGTCCAAAGGTGTGAAAAGAAAATTTATCGATAAATGTGCAAAAAGAAAAAGATGAAGTTCTTAAATAAATGTGAAAACTTCAATAATAAACACTGTTGAAGTTGGTGGAGTTGAGTTATTTAATACCAATTTATGAATTGGTGGGTCAAACATCCTCTTTAGTGTTTAAACTTTAGAAAGTATCTATATAGGTATATGAACTTGGAAAAGTATCTAATAGATTTTTAAAATTTTTAATTTTGTGTCTAAGAAATCATTAACCATTCTAATTCTTTTTTTTTTTTTTTTTTCAATTCACAAAACTAACACAAAATTGAAAGTTTGGGTTCTTTAGACATAAATTTCATTATGATAATTTTTTAGTATGTTCAAGGCATGTTATCATAAAAAAAAAAGTTTAGGGACCTATTAAAAACAAAATTAAGAGTACATGACTTATTAGACACTTAATAAAATTTAGAGATATTTTAGACACAAAATTGTAAATTTAGTAATTGGAATTGTAATTTAACCTATGATAATGGATTGACTTGATAACATTATTGGATGTTTTAATTTTATTTTATTGTATAAATTGTCACAGTTAATCAAGATTAATTTACATTTTATTTTTCTTATTATGTATATGAATTTCATATTTGAATTTCTATGAATTATATGCTACACTTTCCTCTAATTACTTTCCTTTCAATCCAAATATCTTTTGTTTTAGGGTACCTCAAGAAGTCTGAAGAAAACAAAGAAAAGAATGAGAAGGAGGTAAAATTTTTGTAA

mRNA sequence

ATGAGTTCCATCGGCCAAAGCATTCTGATGGCCCTCGCCGTCACTCTCAACAAATTCGCTTCCTCCAACGTTCAATCCGTTCAGAGAAACCAAGCCAACAAGCCTCGCACCGCCACCACCACTGCCACCGCCGGTTCTGCAAATGGAAGAAGAGGCCTCCTCTTGTCTGCCATTGCCGCCGTGGCTGCCGCTCCCGAAGAAGCCGTGGACTCCAGAACCGAGCTGCTAAAAAGTGGGTACCTCAAGAAGTCTGAAGAAAACAAAGAAAAGAATGAGAAGGAGGTAAAATTTTTGTAA

Coding sequence (CDS)

ATGAGTTCCATCGGCCAAAGCATTCTGATGGCCCTCGCCGTCACTCTCAACAAATTCGCTTCCTCCAACGTTCAATCCGTTCAGAGAAACCAAGCCAACAAGCCTCGCACCGCCACCACCACTGCCACCGCCGGTTCTGCAAATGGAAGAAGAGGCCTCCTCTTGTCTGCCATTGCCGCCGTGGCTGCCGCTCCCGAAGAAGCCGTGGACTCCAGAACCGAGCTGCTAAAAAGTGGGTACCTCAAGAAGTCTGAAGAAAACAAAGAAAAGAATGAGAAGGAGGTAAAATTTTTGTAA

Protein sequence

MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPRTATTTATAGSANGRRGLLLSAIAAVAAAPEEAVDSRTELLKSGYLKKSEENKEKNEKEVKFL

Homology

[Close]

BLAST of Cla97C02G033940 vs. NCBI nr
Match: XP_022148828.1 (uncharacterized protein LOC111017388 isoform X1 [Momordica charantia])

HSP 1 Score: 60.5 bits (145), Expect = 3.8e-06
Identity = 47/94 (50.00%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MSSIGQSILMALAVT+NKFASSNVQS                                  
Sbjct: 1  MSSIGQSILMALAVTVNKFASSNVQSVHRNQSAAAAASDIGRRGLLFSAVAAAV------ 60

Query: 61 XXXXPEEAVDSRTELLKSGYLKKSEENKEKNEKE 95
                  VDSRTELLK  YLKKSE+NKEKN+KE
Sbjct: 61 ------APVDSRTELLKR-YLKKSEQNKEKNDKE 81

[Close]

BLAST of Cla97C02G033940 vs. NCBI nr
Match: XP_018857005.1 (PREDICTED: uncharacterized protein LOC109019213 [Juglans regia])

HSP 1 Score: 55.1 bits (131), Expect = 1.6e-04
Identity = 68/94 (72.34%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MSSIGQSILMAL VT+N+FASSNVQ+         XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MSSIGQSILMALTVTVNRFASSNVQA------VHRXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXPEEAVDSRTELLKSGYLKKSEENKEKNEKE 95
          X     +  DSRT+LLK  YLKKSEENK KN+KE
Sbjct: 61 XLVAAPQVADSRTDLLKQ-YLKKSEENKSKNDKE 87

[Close]

BLAST of Cla97C02G033940 vs. NCBI nr
Match: XP_010088316.1 (uncharacterized protein LOC21394405 [Morus notabilis] >EXB33541.1 hypothetical protein L484_011132 [Morus notabilis])

HSP 1 Score: 55.1 bits (131), Expect = 1.6e-04
Identity = 43/94 (45.74%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MSSIGQSILMAL VT+NK+ASSNVQ+                                  
Sbjct: 1  MSSIGQSILMALTVTVNKYASSNVQAVHRKRKRPTTATTTDIGRRGLFLSTVVAAL---- 60

Query: 61 XXXXPEEAVDSRTELLKSGYLKKSEENKEKNEKE 95
                +  DSRTELLK  YLKKSEENK KN+KE
Sbjct: 61 ------QVSDSRTELLKK-YLKKSEENKAKNDKE 83

[Close]

BLAST of Cla97C02G033940 vs. NCBI nr
Match: XP_017414162.1 (PREDICTED: uncharacterized protein LOC108325575 [Vigna angularis] >KOM36199.1 hypothetical protein LR48_Vigan02g234900 [Vigna angularis] >BAT93964.1 hypothetical protein VIGAN_08052400 [Vigna angularis var. angularis])

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 42/94 (44.68%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MSSIGQSILMAL VTLNK+ASSN+Q+                                  
Sbjct: 1  MSSIGQSILMALTVTLNKYASSNLQAVHRTQAKAAHTSNPTLSTKLELGRRGLVLSTLIA 60

Query: 61 XXXXPEEAVDSRTELLKSGYLKKSEENKEKNEKE 95
              P    DSRT+LL+  Y KKSEENKEKN+KE
Sbjct: 61 TTQIP----DSRTQLLQK-YQKKSEENKEKNDKE 89

[Close]

BLAST of Cla97C02G033940 vs. NCBI nr
Match: XP_014512722.1 (uncharacterized protein LOC106771282 [Vigna radiata var. radiata])

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 42/94 (44.68%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MSSIGQSILMAL VTLNK+ASSN+Q+                                  
Sbjct: 1  MSSIGQSILMALTVTLNKYASSNLQAVHRTQGKGAHTSTPTLSTKLELGRRGLVLSTLIA 60

Query: 61 XXXXPEEAVDSRTELLKSGYLKKSEENKEKNEKE 95
              P    DSRT+LL+  Y KKSEENKEKN+KE
Sbjct: 61 TTQIP----DSRTQLLQK-YQKKSEENKEKNDKE 89

[Close]

BLAST of Cla97C02G033940 vs. TrEMBL
Match: tr|W9R137|W9R137_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011132 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 43/94 (45.74%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MSSIGQSILMAL VT+NK+ASSNVQ+                                  
Sbjct: 1  MSSIGQSILMALTVTVNKYASSNVQAVHRKRKRPTTATTTDIGRRGLFLSTVVAAL---- 60

Query: 61 XXXXPEEAVDSRTELLKSGYLKKSEENKEKNEKE 95
                +  DSRTELLK  YLKKSEENK KN+KE
Sbjct: 61 ------QVSDSRTELLKK-YLKKSEENKAKNDKE 83

[Close]

BLAST of Cla97C02G033940 vs. TrEMBL
Match: tr|A0A2I4HLI8|A0A2I4HLI8_9ROSI (uncharacterized protein LOC109019213 OS=Juglans regia OX=51240 GN=LOC109019213 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 68/94 (72.34%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MSSIGQSILMAL VT+N+FASSNVQ+         XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MSSIGQSILMALTVTVNRFASSNVQA------VHRXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXPEEAVDSRTELLKSGYLKKSEENKEKNEKE 95
          X     +  DSRT+LLK  YLKKSEENK KN+KE
Sbjct: 61 XLVAAPQVADSRTDLLKQ-YLKKSEENKSKNDKE 87

[Close]

BLAST of Cla97C02G033940 vs. TrEMBL
Match: tr|A0A1S3V3F8|A0A1S3V3F8_VIGRR (uncharacterized protein LOC106771282 OS=Vigna radiata var. radiata OX=3916 GN=LOC106771282 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-04
Identity = 42/94 (44.68%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MSSIGQSILMAL VTLNK+ASSN+Q+                                  
Sbjct: 1  MSSIGQSILMALTVTLNKYASSNLQAVHRTQGKGAHTSTPTLSTKLELGRRGLVLSTLIA 60

Query: 61 XXXXPEEAVDSRTELLKSGYLKKSEENKEKNEKE 95
              P    DSRT+LL+  Y KKSEENKEKN+KE
Sbjct: 61 TTQIP----DSRTQLLQK-YQKKSEENKEKNDKE 89

[Close]

BLAST of Cla97C02G033940 vs. TrEMBL
Match: tr|A0A0L9U195|A0A0L9U195_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan02g234900 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-04
Identity = 42/94 (44.68%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MSSIGQSILMAL VTLNK+ASSN+Q+                                  
Sbjct: 1  MSSIGQSILMALTVTLNKYASSNLQAVHRTQAKAAHTSNPTLSTKLELGRRGLVLSTLIA 60

Query: 61 XXXXPEEAVDSRTELLKSGYLKKSEENKEKNEKE 95
              P    DSRT+LL+  Y KKSEENKEKN+KE
Sbjct: 61 TTQIP----DSRTQLLQK-YQKKSEENKEKNDKE 89

[Close]

BLAST of Cla97C02G033940 vs. TrEMBL
Match: tr|A0A0S3SM95|A0A0S3SM95_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G052400 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-04
Identity = 42/94 (44.68%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MSSIGQSILMAL VTLNK+ASSN+Q+                                  
Sbjct: 1  MSSIGQSILMALTVTLNKYASSNLQAVHRTQAKAAHTSNPTLSTKLELGRRGLVLSTLIA 60

Query: 61 XXXXPEEAVDSRTELLKSGYLKKSEENKEKNEKE 95
              P    DSRT+LL+  Y KKSEENKEKN+KE
Sbjct: 61 TTQIP----DSRTQLLQK-YQKKSEENKEKNDKE 89

[Close]

BLAST of Cla97C02G033940 vs. TAIR10
Match: AT1G49975.1 (INVOLVED IN: photosynthesis)

HSP 1 Score: 43.1 bits (100), Expect = 1.1e-04
Identity = 37/94 (39.36%), Postives = 45/94 (47.87%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MSSI QSILMAL VT+NK+ASSNVQ+                                  
Sbjct: 1  MSSISQSILMALTVTVNKYASSNVQAVRRNDTKRHSLTAPPADLGRRNILFSSTSFI--- 60

Query: 61 XXXXPEEAVDSRTELLKSGYLKKSEENKEKNEKE 95
                 A+ S  +LL+  YLKK+EENK KN+KE
Sbjct: 61 -----AAALTSSDQLLQK-YLKKTEENKAKNDKE 85

The following BLAST results are available for this feature:

BLAST of Cla97C02G033940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148828.1	3.8e-06	50.00	uncharacterized protein LOC111017388 isoform X1 [Momordica charantia]	[more]
XP_018857005.1	1.6e-04	72.34	PREDICTED: uncharacterized protein LOC109019213 [Juglans regia]	[more]
XP_010088316.1	1.6e-04	45.74	uncharacterized protein LOC21394405 [Morus notabilis] >EXB33541.1 hypothetical p...	[more]
XP_017414162.1	3.5e-04	44.68	PREDICTED: uncharacterized protein LOC108325575 [Vigna angularis] >KOM36199.1 hy...	[more]
XP_014512722.1	3.5e-04	44.68	uncharacterized protein LOC106771282 [Vigna radiata var. radiata]	[more]

BLAST of Cla97C02G033940 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|W9R137\|W9R137_9ROSA	1.1e-04	45.74	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011132 PE=4 SV=1	[more]
tr\|A0A2I4HLI8\|A0A2I4HLI8_9ROSI	1.1e-04	72.34	uncharacterized protein LOC109019213 OS=Juglans regia OX=51240 GN=LOC109019213 P...	[more]
tr\|A0A1S3V3F8\|A0A1S3V3F8_VIGRR	2.3e-04	44.68	uncharacterized protein LOC106771282 OS=Vigna radiata var. radiata OX=3916 GN=LO...	[more]
tr\|A0A0L9U195\|A0A0L9U195_PHAAN	2.3e-04	44.68	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan02g234900 PE...	[more]
tr\|A0A0S3SM95\|A0A0S3SM95_PHAAN	2.3e-04	44.68	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G...	[more]

BLAST of Cla97C02G033940 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G033940 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49975.1	1.1e-04	39.36	INVOLVED IN: photosynthesis	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0042651	thylakoid membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005516	calmodulin binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G033940.1	Cla97C02G033940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 81..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..45
None	No IPR available	PANTHER	PTHR36327	FAMILY NOT NAMED	coord: 1..94

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G033940	MELO3C018528	Melon (DHL92) v3.5.1	mewmbB180
Cla97C02G033940	ClCG02G007100	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G033940	CSPI07G06760	Wild cucumber (PI 183967)	cpiwmbB554
Cla97C02G033940	Cucsa.219060	Cucumber (Gy14) v1	cgywmbB395
Cla97C02G033940	Lsi03G005970	Bottle gourd (USVL1VR-Ls)	lsiwmbB226
Cla97C02G033940	CsGy7G006300	Cucumber (Gy14) v2	cgybwmbB503
Cla97C02G033940	MELO3C018528.2	Melon (DHL92) v3.6.1	medwmbB166
Cla97C02G033940	Carg23043	Silver-seed gourd	carwmbB0766
Cla97C02G033940	CsaV3_7G007730	Cucumber (Chinese Long) v3	cucwmbB550
Cla97C02G033940	Bhi05G000872	Wax gourd	wgowmbB253

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G033940	Cucurbita maxima (Rimu)	cmawmbB104
Cla97C02G033940	Cucurbita maxima (Rimu)	cmawmbB342
Cla97C02G033940	Cucurbita maxima (Rimu)	cmawmbB531
Cla97C02G033940	Cucurbita maxima (Rimu)	cmawmbB744
Cla97C02G033940	Cucurbita moschata (Rifu)	cmowmbB088
Cla97C02G033940	Cucurbita moschata (Rifu)	cmowmbB512
Cla97C02G033940	Cucurbita moschata (Rifu)	cmowmbB717
Cla97C02G033940	Wild cucumber (PI 183967)	cpiwmbB296
Cla97C02G033940	Cucumber (Chinese Long) v3	cucwmbB295
Cla97C02G033940	Cucumber (Chinese Long) v2	cuwmbB289
Cla97C02G033940	Cucumber (Chinese Long) v2	cuwmbB530
Cla97C02G033940	Bottle gourd (USVL1VR-Ls)	lsiwmbB229
Cla97C02G033940	Melon (DHL92) v3.6.1	medwmbB469
Cla97C02G033940	Melon (DHL92) v3.5.1	mewmbB476
Cla97C02G033940	Watermelon (Charleston Gray)	wcgwmbB044
Cla97C02G033940	Watermelon (97103) v1	wmwmbB063
Cla97C02G033940	Watermelon (97103) v1	wmwmbB317
Cla97C02G033940	Wax gourd	wgowmbB033
Cla97C02G033940	Watermelon (97103) v2	wmbwmbB048
Cla97C02G033940	Silver-seed gourd	carwmbB0303
Cla97C02G033940	Silver-seed gourd	carwmbB0394
Cla97C02G033940	Silver-seed gourd	carwmbB0477