Lsi02G016310 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G016310
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_4
Location	chr02 : 22205293 .. 22208232 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGTAATTATGAAAGTTGGGAAACAAATGAAGTTCTTGATTCAAGTAATTTTCCTATTTAGGTTCACAGTTTTGTGGTCCTCTTCCTCTGTAATTGGGCTCATTGTGACCATATTTAGAAGTTCACGGTAAACCTAAAAAACTAGAATCTTCCCATTTAATTCCCAAACTAAAACTAAAACACAAACATCAATATATATATATATATATATATATATTTATTTATTTATCACTATTATAATCTCTAAATTACTATTCAATTTAGTCTTTCTTCTTTTTAATGTCTAATTTTAGTCTCTTTCATTAAAAAATATTATTATTATTTAACCAATTTCAATAAAAACTAACTTCGAGAGACTAAATTTAAAATTTTATTAAAACTATAAGGACTAAAATTAGACATTTGAAAGTATAGAAACTAAAATTAAACAAACTTTAGAGTATAGAGACCAAAATGGTATTTTAACCAATTTCATACTATGAATTTGTCTATTAAAAGTCCTAACTGTACATTACAACCATATTAGGAAGGACAATAATATTAAAAAAGACAAAAAAAAAAAAAAATGAAATAACTACTAAACAAGTTTATTTTTTTTGAAATAAAGCATTAGTTTAAAATACAAGTTTAGAGTTTAGTCACCGACTCTGATGAGTGTGTCTAATATATTTTCAAAACTTTTAAAAGTGTCTGAAACATTCAAATAAGCTCTTGAAATATTCATAAATAGAATTTAAAAAGTGTCTAATAAATTACACAAATTGAGGATTCCATGACCTTTGTGTATTGTTTAAAGTTCAAAATCTTGTTATATATTGGATTTAAAAAGAAGGAAAAATATCAATTTATATTTCTAAACTTTGGAAGTTGTATCAATTAAAATCTCAAACTACTTATTATATAAATTTGTGTGAAACTTATAATTTAAGTTAATTAAACTCCAAAATTTTCATAGGCCAATTAATTTACACTGTCCATTACGATTTTAAAATCATCAATGTATTAATTCTCAAACATGTATAGACTTCTTTAAATGTCGGTTTTACAAAATAGATGATTAGAGTAAATATATTGACAGTTCTCAAAATGTTTTTTAATTAAGAGTCTAAATTAATTCATTTATGTATGTTTATGTTTTTATTTATACAATTATAAATTTCAAACCATAACCATGTTTTTCCAAACGAAATGTAATAAAAGGTGTAAATTGATACACTTACAAAAAGTTTAAGGTTTAAATAGATATAATTATTAGTAGTAGAAATTGATATTATTAAGGGTAGAAATTGATATTTTCTCTAAAAAGAAAAAGACTCCTTAGACAATCTTAAACTTGAAGATGAAACTTGTAATTCAAATATATATATATATATAAAAAAAAAAACTAAAATTTAATCTTGGAGAAGGGGAATCTGATCTAGGTCCTAATGGTTAGGATCTAATTCCCACCAAACACAGTGATATTGATACAATATCTGATAACGACTTTGTGCAACACATCTTTCTTTCTTTCTATCTTTATGAGTTGTGATGTTTCTAAGTTAACAATTCATTAGTTAAAGGATAGAAATTTCATCATCATTAAGCTAAGTGGCTAAATAAGAATAAAGATGGTTACTCAAGACCTTAATTTAACCTTATATTATAATTCCCAGCCCCAACCACTTTCAAAAATTAAATATATTGATAATGTCAATTAAAATAATGGAAGAATATCTGATGTGTCGATACTAAACAAGAACTTTAATCATTTTTAGAATTCCATATCATTCTATTATACTATATATATGTGTATTATTAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCTATTATACTATATATATGTGTATTATAAAAAAAAAAAAAAAAAAAAAAATTAAAGAAAGGGATTAGTGGAATAAGAGAAAATTTGGCTTAACTTTAGGAAAATGAAATTATTTTTCTTTTTTTGAACAGTAAAAACTCTTGAAACAAAGGAAGCCAAATAAAGGAGAGGAGACACATCACACAGTTGATTGTACCATGAAAAGCAGAAGATTGGTTTTTTTAATTATGGAATAAGCAGAAACAACAAAACCCATCACCACAAAGGAGAAGAAAGAAGGGCGCAGAGAAGAACAAAACATGGAAGAAACAGAGACAAAGAAGAGCAAGAAGAACAACAAGAAGCAAAAACACCAACACCCAAATGACCAAACCACAAAACCAGCCTCTGATTTCTCTTTCAAGCCAAGCTCTGATGTAAAGGGTCTTAGATTCGGTGGCCAATTCATTGTTAAATCCTTCACAATCCGGCGAGCTAGGCCTTTAGAGTTCCTCCAGCTTCTCTCTTTTCCGGCTACCACCAGAAATTCCGGCCACAAACCACCGTTCCCATCAGCCACAGCTTTCATTCCTACAAACTTCACAATCCTTGCTCACCATGCGTGGCACACACTCACTCTAGGCCTTGGCACTAAGAAGTCCAAAGTTCTTCTCTTTGTGTTTGAAAATGAGACCATGAAAGCAGCCATAGATCGTGTTTGGCCAACAGAAATCCCTCTAGGCGAAGTGAACAAGAAGATGATTAGAGGGCTAAGTGGGTGTGAGATGGCTCGGTTCAAATTCAGAAAAGGTTGCATAACTTTTTATGTTTATGCAGTTCGAAGAGAAGGGTGTTTTGGGTTTTCTTGTACTGATGATTTGAGAACTATTTTGGAGTCTGTTGTTGCTCTCAAAGATTTCTTGGATCACACTGCTATGCTTGCTATGCCTAATCAGAGAACCATCAGCTTTGCTGTGCCTCCTGTTGCAATGGCTTATTAG

mRNA sequence

ATGGAAACAACAAAACCCATCACCACAAAGGAGAAGAAAGAAGGGCGCAGAGAAGAACAAAACATGGAAGAAACAGAGACAAAGAAGAGCAAGAAGAACAACAAGAAGCAAAAACACCAACACCCAAATGACCAAACCACAAAACCAGCCTCTGATTTCTCTTTCAAGCCAAGCTCTGATGTAAAGGGTCTTAGATTCGGTGGCCAATTCATTGTTAAATCCTTCACAATCCGGCGAGCTAGGCCTTTAGAGTTCCTCCAGCTTCTCTCTTTTCCGGCTACCACCAGAAATTCCGGCCACAAACCACCGTTCCCATCAGCCACAGCTTTCATTCCTACAAACTTCACAATCCTTGCTCACCATGCGTGGCACACACTCACTCTAGGCCTTGGCACTAAGAAGTCCAAAGTTCTTCTCTTTGTGTTTGAAAATGAGACCATGAAAGCAGCCATAGATCGTGTTTGGCCAACAGAAATCCCTCTAGGCGAAGTGAACAAGAAGATGATTAGAGGGCTAAGTGGGTGTGAGATGGCTCGGTTCAAATTCAGAAAAGGTTGCATAACTTTTTATGTTTATGCAGTTCGAAGAGAAGGGTGTTTTGGGTTTTCTTGTACTGATGATTTGAGAACTATTTTGGAGTCTGTTGTTGCTCTCAAAGATTTCTTGGATCACACTGCTATGCTTGCTATGCCTAATCAGAGAACCATCAGCTTTGCTGTGCCTCCTGTTGCAATGGCTTATTAG

Coding sequence (CDS)

ATGGAAACAACAAAACCCATCACCACAAAGGAGAAGAAAGAAGGGCGCAGAGAAGAACAAAACATGGAAGAAACAGAGACAAAGAAGAGCAAGAAGAACAACAAGAAGCAAAAACACCAACACCCAAATGACCAAACCACAAAACCAGCCTCTGATTTCTCTTTCAAGCCAAGCTCTGATGTAAAGGGTCTTAGATTCGGTGGCCAATTCATTGTTAAATCCTTCACAATCCGGCGAGCTAGGCCTTTAGAGTTCCTCCAGCTTCTCTCTTTTCCGGCTACCACCAGAAATTCCGGCCACAAACCACCGTTCCCATCAGCCACAGCTTTCATTCCTACAAACTTCACAATCCTTGCTCACCATGCGTGGCACACACTCACTCTAGGCCTTGGCACTAAGAAGTCCAAAGTTCTTCTCTTTGTGTTTGAAAATGAGACCATGAAAGCAGCCATAGATCGTGTTTGGCCAACAGAAATCCCTCTAGGCGAAGTGAACAAGAAGATGATTAGAGGGCTAAGTGGGTGTGAGATGGCTCGGTTCAAATTCAGAAAAGGTTGCATAACTTTTTATGTTTATGCAGTTCGAAGAGAAGGGTGTTTTGGGTTTTCTTGTACTGATGATTTGAGAACTATTTTGGAGTCTGTTGTTGCTCTCAAAGATTTCTTGGATCACACTGCTATGCTTGCTATGCCTAATCAGAGAACCATCAGCTTTGCTGTGCCTCCTGTTGCAATGGCTTATTAG

Protein sequence

METTKPITTKEKKEGRREEQNMEETETKKSKKNNKKQKHQHPNDQTTKPASDFSFKPSSDVKGLRFGGQFIVKSFTIRRARPLEFLQLLSFPATTRNSGHKPPFPSATAFIPTNFTILAHHAWHTLTLGLGTKKSKVLLFVFENETMKAAIDRVWPTEIPLGEVNKKMIRGLSGCEMARFKFRKGCITFYVYAVRREGCFGFSCTDDLRTILESVVALKDFLDHTAMLAMPNQRTISFAVPPVAMAY

Homology

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BLAST of Lsi02G016310 vs. TrEMBL
Match: A0A0A0KNW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517120 PE=4 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 3.3e-126
Identity = 236/246 (95.93%), Postives = 238/246 (96.75%), Query Frame = 1


Query: 2   ETTKPITTKEKKEGRREEQNMEETETKKSKKNNKKQKHQHPNDQTTKPASDFSFKPSSDV 61
           ETTKPITTKEKKE   EEQ MEETETKKSKKNNKKQKHQHPNDQTTK  SDFSFKP SDV
Sbjct: 5   ETTKPITTKEKKEVHIEEQEMEETETKKSKKNNKKQKHQHPNDQTTK--SDFSFKPCSDV 64

Query: 62  KGLRFGGQFIVKSFTIRRARPLEFLQLLSFPATTRNSGHKPPFPSATAFIPTNFTILAHH 121
           KGLRFGGQFIVKSFTIRRARPLE L+LLSFPATTRNSGHKPPFPSATAFIPTNFTILAHH
Sbjct: 65  KGLRFGGQFIVKSFTIRRARPLELLRLLSFPATTRNSGHKPPFPSATAFIPTNFTILAHH 124

Query: 122 AWHTLTLGLGTKKSKVLLFVFENETMKAAIDRVWPTEIPLGEVNKKMIRGLSGCEMARFK 181
           AWHTLTLGLGT+KSKVLLFVFENETMKAAIDRVWPTEIPLGEVNKKMIRGLSGCEMARFK
Sbjct: 125 AWHTLTLGLGTRKSKVLLFVFENETMKAAIDRVWPTEIPLGEVNKKMIRGLSGCEMARFK 184

Query: 182 FRKGCITFYVYAVRREGCFGFSCTDDLRTILESVVALKDFLDHTAMLAMPNQRTISFAVP 241
           FRKGCITFYVYAVRREGCFGFSCTDDLRTILESVVALKDFLDHTAMLAMPNQRTISFAVP
Sbjct: 185 FRKGCITFYVYAVRREGCFGFSCTDDLRTILESVVALKDFLDHTAMLAMPNQRTISFAVP 244

Query: 242 PVAMAY 248
           PVAMAY
Sbjct: 245 PVAMAY 248

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BLAST of Lsi02G016310 vs. TrEMBL
Match: A0A061FNF3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_042769 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 6.9e-100
Identity = 183/222 (82.43%), Postives = 202/222 (90.99%), Query Frame = 1


Query: 26  ETKKSKKNNKKQKHQHPNDQTTKPASDFSFKPSSDVKGLRFGGQFIVKSFTIRRARPLEF 85
           E K+  K NKKQKHQHPNDQTTKPASDFSFKPSS+VKGLRFGGQFIVKSFTIRRARPLE 
Sbjct: 2   EEKEKNKKNKKQKHQHPNDQTTKPASDFSFKPSSEVKGLRFGGQFIVKSFTIRRARPLEL 61

Query: 86  LQLLSFPATTRNSGHKPPFPSATAFIPTNFTILAHHAWHTLTLGLGTKKSKVLLFVFENE 145
           L+LL FP  ++++ +K PFPS TAF+PTNFTILAHHAWHTLTLGLGTKKSKVLLFVFE+E
Sbjct: 62  LKLLDFPPISKSNSNKLPFPSTTAFLPTNFTILAHHAWHTLTLGLGTKKSKVLLFVFESE 121

Query: 146 TMKAAIDRVWPTEIPLGEVNKKMIRGLSGCEMARFKFRKGCITFYVYAVRREGCFGFSCT 205
            MK A+DR+WP EIPLGEVNKK+IRGL+GCEMARFKFRKGCITFYVYAVR+ G  GFSC 
Sbjct: 122 AMKLAVDRIWPPEIPLGEVNKKLIRGLTGCEMARFKFRKGCITFYVYAVRKVGNMGFSCA 181

Query: 206 DDLRTILESVVALKDFLDHTAMLAMPNQRTISFAVPPVAMAY 248
           DDLRTIL+SVVALKDFLDHTAMLAMPNQR+IS+  PPVAMA+
Sbjct: 182 DDLRTILQSVVALKDFLDHTAMLAMPNQRSISYC-PPVAMAH 222

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BLAST of Lsi02G016310 vs. TrEMBL
Match: B9HMH8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s05590g PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 5.0e-98
Identity = 179/223 (80.27%), Postives = 204/223 (91.48%), Query Frame = 1


Query: 26  ETKKSKKNNKKQKHQHPNDQTTKPASDFSFKPSSDVKGLRFGGQFIVKSFTIRRARPLEF 85
           E K+ KK++KKQKHQHPNDQTTKP+SDFSFKPSS+VKGLRFGGQFIVKSFTIRRARPLE 
Sbjct: 2   EDKEKKKHHKKQKHQHPNDQTTKPSSDFSFKPSSEVKGLRFGGQFIVKSFTIRRARPLEL 61

Query: 86  LQLLSFPATTRNS-GHKPPFPSATAFIPTNFTILAHHAWHTLTLGLGTKKSKVLLFVFEN 145
           L++LS+P T +NS  +K PFPS TAF+PTNFTILAHHAWHTLTLGLGTKKSKVLLFVFE+
Sbjct: 62  LKVLSYPPTNKNSDNNKTPFPSTTAFLPTNFTILAHHAWHTLTLGLGTKKSKVLLFVFES 121

Query: 146 ETMKAAIDRVWPTEIPLGEVNKKMIRGLSGCEMARFKFRKGCITFYVYAVRREGCFGFSC 205
           E+M+ A+DR+WP EIPLGEVNKK+IRGL+GCEMARFKFRKGCITFYVYAVRR G  GFSC
Sbjct: 122 ESMRLAVDRIWPPEIPLGEVNKKLIRGLNGCEMARFKFRKGCITFYVYAVRRVGNMGFSC 181

Query: 206 TDDLRTILESVVALKDFLDHTAMLAMPNQRTISFAVPPVAMAY 248
            DDL+ IL+SVVAL DFLDHTAMLAMP+QR+I++A P VAMA+
Sbjct: 182 ADDLKIILQSVVALNDFLDHTAMLAMPHQRSINYASPQVAMAH 224

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BLAST of Lsi02G016310 vs. TrEMBL
Match: B9HTI8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s21140g PE=4 SV=2)

HSP 1 Score: 363.2 bits (931), Expect = 2.5e-97
Identity = 178/223 (79.82%), Postives = 203/223 (91.03%), Query Frame = 1


Query: 26  ETKKSKKNNKKQKHQHPNDQTTKPASDFSFKPSSDVKGLRFGGQFIVKSFTIRRARPLEF 85
           E K+ KK+NKKQKHQHPN QT+KP+SDFSFKPSS+VKGLRFGGQFIVKSFTIRRARPLE 
Sbjct: 2   EEKEKKKHNKKQKHQHPNQQTSKPSSDFSFKPSSEVKGLRFGGQFIVKSFTIRRARPLEL 61

Query: 86  LQLLSFPATTRNSGH-KPPFPSATAFIPTNFTILAHHAWHTLTLGLGTKKSKVLLFVFEN 145
           L++LS+PAT +NS + K  FPS TAF+PTNFTILAHHAWHTLTLGLGTKKSKVLLFVFE+
Sbjct: 62  LKVLSYPATNKNSNNSKAAFPSTTAFLPTNFTILAHHAWHTLTLGLGTKKSKVLLFVFES 121

Query: 146 ETMKAAIDRVWPTEIPLGEVNKKMIRGLSGCEMARFKFRKGCITFYVYAVRREGCFGFSC 205
           E+MK A+DR+WP EIPLGEVNKK+IRGL+GCEMARFKFRKGC+TFYVYAVRR G  GFSC
Sbjct: 122 ESMKLAVDRIWPPEIPLGEVNKKLIRGLNGCEMARFKFRKGCVTFYVYAVRRVGNLGFSC 181

Query: 206 TDDLRTILESVVALKDFLDHTAMLAMPNQRTISFAVPPVAMAY 248
            DDL+ IL+SVVAL DFLDHTAMLAMP+QR+I++A P VAMA+
Sbjct: 182 ADDLKMILQSVVALNDFLDHTAMLAMPHQRSINYASPQVAMAH 224

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BLAST of Lsi02G016310 vs. TrEMBL
Match: B9SXY0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1207230 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 3.0e-95
Identity = 177/227 (77.97%), Postives = 197/227 (86.78%), Query Frame = 1


Query: 28  KKSKKNNKKQKHQHPNDQTTKPASDFSFKPSSDVKGLRFGGQFIVKSFTIRRARPLEFLQ 87
           +K KK NKKQKHQHPNDQTTKP SDFSFKPSS+VKGLRFGGQFI+KSFTIRRARPLE L+
Sbjct: 3   EKEKKKNKKQKHQHPNDQTTKPTSDFSFKPSSEVKGLRFGGQFIIKSFTIRRARPLELLK 62

Query: 88  LLSFPATTRNSGH-------KPPFPSATAFIPTNFTILAHHAWHTLTLGLGTKKSKVLLF 147
           +LS+P T  N+         K PFPS TAF+PTNFTILAHHAWHTLTLGLGTKKSKVL+F
Sbjct: 63  VLSYPPTNSNNSSSNKNGTTKIPFPSTTAFLPTNFTILAHHAWHTLTLGLGTKKSKVLVF 122

Query: 148 VFENETMKAAIDRVWPTEIPLGEVNKKMIRGLSGCEMARFKFRKGCITFYVYAVRREGCF 207
           VFE+E+MK A DR+WP EIPLGEVNKK+IRGLSG EMARFKFRKGCITFYVYAVRR G  
Sbjct: 123 VFESESMKLATDRIWPPEIPLGEVNKKLIRGLSGAEMARFKFRKGCITFYVYAVRRVGTM 182

Query: 208 GFSCTDDLRTILESVVALKDFLDHTAMLAMPNQRTISFAVPPVAMAY 248
           GFSC DDLRTIL+SVV+L DFLDHTAMLAMP+QR+I++   PVAMA+
Sbjct: 183 GFSCADDLRTILQSVVSLNDFLDHTAMLAMPHQRSINYNQAPVAMAH 229

[Close]

BLAST of Lsi02G016310 vs. TAIR10
Match: AT3G55420.1 (AT3G55420.1 unknown protein)

HSP 1 Score: 273.9 bits (699), Expect = 9.9e-74
Identity = 149/231 (64.50%), Postives = 175/231 (75.76%), Query Frame = 1


Query: 22  MEETETKKSKKNNKKQKHQHPNDQTTKPASDFSFKPSSDVKGLRFGGQFIVKSFTIRRAR 81
           M E E KK+KK  KK+KHQ         +SD SFKPSSDVKGL+FGGQ IVKSFTIRRAR
Sbjct: 1   MAEKE-KKTKKKKKKEKHQ---------SSDISFKPSSDVKGLKFGGQIIVKSFTIRRAR 60

Query: 82  PLEFLQLLSFPATTRNSGHKPPFPSATAFIPTNFTILAHHAWHTLTLGLGTKKSKVLLFV 141
             E L+LLS P     S   PP  S  A++PTNFTILAHHAWHTLTLGLGT+KSKV++FV
Sbjct: 61  TFELLKLLSLP-----SSSSPPLLSTAAYLPTNFTILAHHAWHTLTLGLGTRKSKVVVFV 120

Query: 142 FENETMK----AAIDRVWPTEIPLGEVNKKMIRGLSGCEMARFKFRKGCITFYVYAVRRE 201
           FE E MK    AA   +WP+EIPLG+VNKKMIR L   EMARFKFRKGCITFYVYAVR  
Sbjct: 121 FETEAMKSSVVAAEGGIWPSEIPLGDVNKKMIRKLKNWEMARFKFRKGCITFYVYAVRNA 180

Query: 202 GCFGFSCTDDLRTILESVVALKDFLDHTAMLAMPNQRTISF-AVPPVAMAY 248
           G  GF+  +DL+ IL++VVALKDF+DHTAML MP+Q++I++ + PP AMA+
Sbjct: 181 GNEGFAAAEDLKVILQAVVALKDFMDHTAMLVMPHQKSINYSSCPPFAMAH 216

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BLAST of Lsi02G016310 vs. NCBI nr
Match: gi|659117960|ref|XP_008458876.1| (PREDICTED: uncharacterized protein LOC103498150 [Cucumis melo])

HSP 1 Score: 467.2 bits (1201), Expect = 1.7e-128
Identity = 237/246 (96.34%), Postives = 241/246 (97.97%), Query Frame = 1


Query: 2   ETTKPITTKEKKEGRREEQNMEETETKKSKKNNKKQKHQHPNDQTTKPASDFSFKPSSDV 61
           ETTKPITTKEKKE  +EEQ+MEETETKKSKK+NKKQKHQHPNDQTTK ASDFSFKP SDV
Sbjct: 5   ETTKPITTKEKKEVHKEEQDMEETETKKSKKHNKKQKHQHPNDQTTKSASDFSFKPCSDV 64

Query: 62  KGLRFGGQFIVKSFTIRRARPLEFLQLLSFPATTRNSGHKPPFPSATAFIPTNFTILAHH 121
           KGLRFGGQFIVKSFTIRRARPLE LQLLSFPATTRNSGHKPPFPSATAFIPTNFTILAHH
Sbjct: 65  KGLRFGGQFIVKSFTIRRARPLELLQLLSFPATTRNSGHKPPFPSATAFIPTNFTILAHH 124

Query: 122 AWHTLTLGLGTKKSKVLLFVFENETMKAAIDRVWPTEIPLGEVNKKMIRGLSGCEMARFK 181
           AWHTLTLGLGT+KSKVLLFVFENETMKAAIDRVWPTEIPLGEVNKKMIRGLSGCEMARFK
Sbjct: 125 AWHTLTLGLGTRKSKVLLFVFENETMKAAIDRVWPTEIPLGEVNKKMIRGLSGCEMARFK 184

Query: 182 FRKGCITFYVYAVRREGCFGFSCTDDLRTILESVVALKDFLDHTAMLAMPNQRTISFAVP 241
           FRKGCITFYVYAVRREGCFGFSCTDDLRTILESVVALKDFLDHTAMLAMPNQRTISFAVP
Sbjct: 185 FRKGCITFYVYAVRREGCFGFSCTDDLRTILESVVALKDFLDHTAMLAMPNQRTISFAVP 244

Query: 242 PVAMAY 248
           PVAMAY
Sbjct: 245 PVAMAY 250

[Close]

BLAST of Lsi02G016310 vs. NCBI nr
Match: gi|778703427|ref|XP_004142759.2| (PREDICTED: uncharacterized protein LOC101214484 [Cucumis sativus])

HSP 1 Score: 459.1 bits (1180), Expect = 4.7e-126
Identity = 236/246 (95.93%), Postives = 238/246 (96.75%), Query Frame = 1


Query: 2   ETTKPITTKEKKEGRREEQNMEETETKKSKKNNKKQKHQHPNDQTTKPASDFSFKPSSDV 61
           ETTKPITTKEKKE   EEQ MEETETKKSKKNNKKQKHQHPNDQTTK  SDFSFKP SDV
Sbjct: 5   ETTKPITTKEKKEVHIEEQEMEETETKKSKKNNKKQKHQHPNDQTTK--SDFSFKPCSDV 64

Query: 62  KGLRFGGQFIVKSFTIRRARPLEFLQLLSFPATTRNSGHKPPFPSATAFIPTNFTILAHH 121
           KGLRFGGQFIVKSFTIRRARPLE L+LLSFPATTRNSGHKPPFPSATAFIPTNFTILAHH
Sbjct: 65  KGLRFGGQFIVKSFTIRRARPLELLRLLSFPATTRNSGHKPPFPSATAFIPTNFTILAHH 124

Query: 122 AWHTLTLGLGTKKSKVLLFVFENETMKAAIDRVWPTEIPLGEVNKKMIRGLSGCEMARFK 181
           AWHTLTLGLGT+KSKVLLFVFENETMKAAIDRVWPTEIPLGEVNKKMIRGLSGCEMARFK
Sbjct: 125 AWHTLTLGLGTRKSKVLLFVFENETMKAAIDRVWPTEIPLGEVNKKMIRGLSGCEMARFK 184

Query: 182 FRKGCITFYVYAVRREGCFGFSCTDDLRTILESVVALKDFLDHTAMLAMPNQRTISFAVP 241
           FRKGCITFYVYAVRREGCFGFSCTDDLRTILESVVALKDFLDHTAMLAMPNQRTISFAVP
Sbjct: 185 FRKGCITFYVYAVRREGCFGFSCTDDLRTILESVVALKDFLDHTAMLAMPNQRTISFAVP 244

Query: 242 PVAMAY 248
           PVAMAY
Sbjct: 245 PVAMAY 248

[Close]

BLAST of Lsi02G016310 vs. NCBI nr
Match: gi|590563336|ref|XP_007009342.1| (Uncharacterized protein TCM_042769 [Theobroma cacao])

HSP 1 Score: 371.7 bits (953), Expect = 9.9e-100
Identity = 183/222 (82.43%), Postives = 202/222 (90.99%), Query Frame = 1


Query: 26  ETKKSKKNNKKQKHQHPNDQTTKPASDFSFKPSSDVKGLRFGGQFIVKSFTIRRARPLEF 85
           E K+  K NKKQKHQHPNDQTTKPASDFSFKPSS+VKGLRFGGQFIVKSFTIRRARPLE 
Sbjct: 2   EEKEKNKKNKKQKHQHPNDQTTKPASDFSFKPSSEVKGLRFGGQFIVKSFTIRRARPLEL 61

Query: 86  LQLLSFPATTRNSGHKPPFPSATAFIPTNFTILAHHAWHTLTLGLGTKKSKVLLFVFENE 145
           L+LL FP  ++++ +K PFPS TAF+PTNFTILAHHAWHTLTLGLGTKKSKVLLFVFE+E
Sbjct: 62  LKLLDFPPISKSNSNKLPFPSTTAFLPTNFTILAHHAWHTLTLGLGTKKSKVLLFVFESE 121

Query: 146 TMKAAIDRVWPTEIPLGEVNKKMIRGLSGCEMARFKFRKGCITFYVYAVRREGCFGFSCT 205
            MK A+DR+WP EIPLGEVNKK+IRGL+GCEMARFKFRKGCITFYVYAVR+ G  GFSC 
Sbjct: 122 AMKLAVDRIWPPEIPLGEVNKKLIRGLTGCEMARFKFRKGCITFYVYAVRKVGNMGFSCA 181

Query: 206 DDLRTILESVVALKDFLDHTAMLAMPNQRTISFAVPPVAMAY 248
           DDLRTIL+SVVALKDFLDHTAMLAMPNQR+IS+  PPVAMA+
Sbjct: 182 DDLRTILQSVVALKDFLDHTAMLAMPNQRSISYC-PPVAMAH 222

[Close]

BLAST of Lsi02G016310 vs. NCBI nr
Match: gi|743780407|ref|XP_011029486.1| (PREDICTED: uncharacterized protein LOC105129188 [Populus euphratica])

HSP 1 Score: 366.7 bits (940), Expect = 3.2e-98
Identity = 180/223 (80.72%), Postives = 204/223 (91.48%), Query Frame = 1


Query: 26  ETKKSKKNNKKQKHQHPNDQTTKPASDFSFKPSSDVKGLRFGGQFIVKSFTIRRARPLEF 85
           E K+ KK++KKQKHQHPNDQTTKP+SDFSFKPSS+VKGLRFGGQFIVKSFTIRRARPLE 
Sbjct: 2   EDKEKKKHHKKQKHQHPNDQTTKPSSDFSFKPSSEVKGLRFGGQFIVKSFTIRRARPLEL 61

Query: 86  LQLLSFPATTRNS-GHKPPFPSATAFIPTNFTILAHHAWHTLTLGLGTKKSKVLLFVFEN 145
           L++LS+P T +NS  +K PFPS TAF+PTNFTILAHHAWHTLTLGLGTKKSKVLLFVFE+
Sbjct: 62  LKVLSYPPTNKNSDNNKTPFPSTTAFLPTNFTILAHHAWHTLTLGLGTKKSKVLLFVFES 121

Query: 146 ETMKAAIDRVWPTEIPLGEVNKKMIRGLSGCEMARFKFRKGCITFYVYAVRREGCFGFSC 205
           E+MK A+DR+WP EIPLGEVNKK+IRGL+GCEMARFKFRKGCITFYVYAVRR G  GFSC
Sbjct: 122 ESMKMAVDRIWPPEIPLGEVNKKLIRGLNGCEMARFKFRKGCITFYVYAVRRVGNMGFSC 181

Query: 206 TDDLRTILESVVALKDFLDHTAMLAMPNQRTISFAVPPVAMAY 248
            DDL+ IL+SVVAL DFLDHTAMLAMP+QR+I++A P VAMA+
Sbjct: 182 ADDLKIILQSVVALNDFLDHTAMLAMPHQRSINYASPQVAMAH 224

[Close]

BLAST of Lsi02G016310 vs. NCBI nr
Match: gi|224100987|ref|XP_002312096.1| (hypothetical protein POPTR_0008s05590g [Populus trichocarpa])

HSP 1 Score: 365.5 bits (937), Expect = 7.1e-98
Identity = 179/223 (80.27%), Postives = 204/223 (91.48%), Query Frame = 1


Query: 26  ETKKSKKNNKKQKHQHPNDQTTKPASDFSFKPSSDVKGLRFGGQFIVKSFTIRRARPLEF 85
           E K+ KK++KKQKHQHPNDQTTKP+SDFSFKPSS+VKGLRFGGQFIVKSFTIRRARPLE 
Sbjct: 2   EDKEKKKHHKKQKHQHPNDQTTKPSSDFSFKPSSEVKGLRFGGQFIVKSFTIRRARPLEL 61

Query: 86  LQLLSFPATTRNS-GHKPPFPSATAFIPTNFTILAHHAWHTLTLGLGTKKSKVLLFVFEN 145
           L++LS+P T +NS  +K PFPS TAF+PTNFTILAHHAWHTLTLGLGTKKSKVLLFVFE+
Sbjct: 62  LKVLSYPPTNKNSDNNKTPFPSTTAFLPTNFTILAHHAWHTLTLGLGTKKSKVLLFVFES 121

Query: 146 ETMKAAIDRVWPTEIPLGEVNKKMIRGLSGCEMARFKFRKGCITFYVYAVRREGCFGFSC 205
           E+M+ A+DR+WP EIPLGEVNKK+IRGL+GCEMARFKFRKGCITFYVYAVRR G  GFSC
Sbjct: 122 ESMRLAVDRIWPPEIPLGEVNKKLIRGLNGCEMARFKFRKGCITFYVYAVRRVGNMGFSC 181

Query: 206 TDDLRTILESVVALKDFLDHTAMLAMPNQRTISFAVPPVAMAY 248
            DDL+ IL+SVVAL DFLDHTAMLAMP+QR+I++A P VAMA+
Sbjct: 182 ADDLKIILQSVVALNDFLDHTAMLAMPHQRSINYASPQVAMAH 224

The following BLAST results are available for this feature:

BLAST of Lsi02G016310 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi02G016310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNW4_CUCSA	3.3e-126	95.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517120 PE=4 SV=1	[more]
A0A061FNF3_THECC	6.9e-100	82.43	Uncharacterized protein OS=Theobroma cacao GN=TCM_042769 PE=4 SV=1	[more]
B9HMH8_POPTR	5.0e-98	80.27	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s05590g PE=4 SV=1	[more]
B9HTI8_POPTR	2.5e-97	79.82	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s21140g PE=4 SV=2	[more]
B9SXY0_RICCO	3.0e-95	77.97	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1207230 PE=4 SV=1	[more]

BLAST of Lsi02G016310 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G55420.1	9.9e-74	64.50	unknown protein	[more]

BLAST of Lsi02G016310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659117960\|ref\|XP_008458876.1\|	1.7e-128	96.34	PREDICTED: uncharacterized protein LOC103498150 [Cucumis melo]	[more]
gi\|778703427\|ref\|XP_004142759.2\|	4.7e-126	95.93	PREDICTED: uncharacterized protein LOC101214484 [Cucumis sativus]	[more]
gi\|590563336\|ref\|XP_007009342.1\|	9.9e-100	82.43	Uncharacterized protein TCM_042769 [Theobroma cacao]	[more]
gi\|743780407\|ref\|XP_011029486.1\|	3.2e-98	80.72	PREDICTED: uncharacterized protein LOC105129188 [Populus euphratica]	[more]
gi\|224100987\|ref\|XP_002312096.1\|	7.1e-98	80.27	hypothetical protein POPTR_0008s05590g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006949	syncytium formation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G016310.1	Lsi02G016310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 15..35 scor
None	No IPR available	PANTHER	PTHR36375	FAMILY NOT NAMED	coord: 23..246 score: 2.1E
None	No IPR available	PANTHER	PTHR36375:SF1	SUBFAMILY NOT NAMED	coord: 23..246 score: 2.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G016310	Csa5G517120	Cucumber (Chinese Long) v2	culsiB347
Lsi02G016310	CSPI05G17750	Wild cucumber (PI 183967)	cpilsiB351
Lsi02G016310	Cucsa.010830	Cucumber (Gy14) v1	cgylsiB318
Lsi02G016310	CmaCh15G003850	Cucurbita maxima (Rimu)	cmalsiB272
Lsi02G016310	CmaCh04G026470	Cucurbita maxima (Rimu)	cmalsiB651
Lsi02G016310	CmoCh04G027680	Cucurbita moschata (Rifu)	cmolsiB640
Lsi02G016310	CmoCh15G003960	Cucurbita moschata (Rifu)	cmolsiB261
Lsi02G016310	Cla004661	Watermelon (97103) v1	lsiwmB170
Lsi02G016310	MELO3C021630	Melon (DHL92) v3.5.1	lsimeB162
Lsi02G016310	ClCG09G019730	Watermelon (Charleston Gray)	lsiwcgB155
Lsi02G016310	MELO3C021630.2	Melon (DHL92) v3.6.1	lsimedB171
Lsi02G016310	Cla97C09G181180	Watermelon (97103) v2	lsiwmbB208
Lsi02G016310	Bhi06G000529	Wax gourd	lsiwgoB207
Lsi02G016310	Cp4.1LG01g23680	Cucurbita pepo (Zucchini)	cpelsiB336
Lsi02G016310	Cp4.1LG13g09300	Cucurbita pepo (Zucchini)	cpelsiB141
Lsi02G016310	CsGy5G017410	Cucumber (Gy14) v2	cgyblsiB318
Lsi02G016310	Carg02347	Silver-seed gourd	carlsiB232
Lsi02G016310	Carg04498	Silver-seed gourd	carlsiB623
Lsi02G016310	CsaV3_5G026670	Cucumber (Chinese Long) v3	cuclsiB370

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G016310	Melon (DHL92) v3.6.1	lsimedB241
Lsi02G016310	Melon (DHL92) v3.6.1	lsimedB178
Lsi02G016310	Cucumber (Chinese Long) v3	cuclsiB290
Lsi02G016310	Cucumber (Chinese Long) v3	cuclsiB374
Lsi02G016310	Watermelon (97103) v2	lsiwmbB182
Lsi02G016310	Watermelon (97103) v2	lsiwmbB205
Lsi02G016310	Bottle gourd (USVL1VR-Ls)	lsilsiB067
Lsi02G016310	Bottle gourd (USVL1VR-Ls)	lsilsiB102
Lsi02G016310	Cucumber (Gy14) v1	cgylsiB061
Lsi02G016310	Cucurbita maxima (Rimu)	cmalsiB607
Lsi02G016310	Cucurbita maxima (Rimu)	cmalsiB798
Lsi02G016310	Cucurbita moschata (Rifu)	cmolsiB595
Lsi02G016310	Cucurbita moschata (Rifu)	cmolsiB634
Lsi02G016310	Cucurbita moschata (Rifu)	cmolsiB784
Lsi02G016310	Wild cucumber (PI 183967)	cpilsiB267
Lsi02G016310	Cucumber (Chinese Long) v2	culsiB269
Lsi02G016310	Melon (DHL92) v3.5.1	lsimeB229
Lsi02G016310	Watermelon (Charleston Gray)	lsiwcgB189
Lsi02G016310	Watermelon (97103) v1	lsiwmB209
Lsi02G016310	Cucumber (Gy14) v2	cgyblsiB253
Lsi02G016310	Cucumber (Gy14) v2	cgyblsiB322