Lsi02G011210 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi02G011210
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_112
Locationchr02 : 13049055 .. 13049525 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTTTGAGCAAGTTCTCAATCTCTTCGATTTATTCTGGTTCGAGCGTAAAATCTTCAACAAACACCCCTTTTTGAGCAAAGAAATCGTCGGAGCGGAGTCGAGGAGAAGGCCTAGAGGGAGAAGAATGAAGGGGTCGGAAAGTAGGAGTCTTTTGGAGCTGGAATTTGAGGAGCTAAAAGGGTTAATGGATTTAGGATTCGTTTTCTCCGAAGAGGATAAAGGTTCGAGCTTGGCATCGATAGTTCCGGGATTAAACAGGCTAGGAAAAAGAGAAGAAGAAGAAGAAAGAAAGTTGTGTGGTGAAATTTCGAGGCCTTATCTTTCAGAAGCTTGGGAGGCTATGGAGGAAGAAGAAGAGAAATTGGGGAAGCCATTGATGATGAAATGGAAGCTTCCTTATAATCAGATTCATATGAAAGTTAATCTCAAATGGTGGGCTCATGTTGTTGCTTCAACGGTTAGATGA

mRNA sequence

ATGGACTTTGAGCAAGTTCTCAATCTCTTCGATTTATTCTGGTTCGAGCGTAAAATCTTCAACAAACACCCCTTTTTGAGCAAAGAAATCGTCGGAGCGGAGTCGAGGAGAAGGCCTAGAGGGAGAAGAATGAAGGGGTCGGAAAGTAGGAGTCTTTTGGAGCTGGAATTTGAGGAGCTAAAAGGGTTAATGGATTTAGGATTCGTTTTCTCCGAAGAGGATAAAGGTTCGAGCTTGGCATCGATAGTTCCGGGATTAAACAGGCTAGGAAAAAGAGAAGAAGAAGAAGAAAGAAAGTTGTGTGGTGAAATTTCGAGGCCTTATCTTTCAGAAGCTTGGGAGGCTATGGAGGAAGAAGAAGAGAAATTGGGGAAGCCATTGATGATGAAATGGAAGCTTCCTTATAATCAGATTCATATGAAAGTTAATCTCAAATGGTGGGCTCATGTTGTTGCTTCAACGGTTAGATGA

Coding sequence (CDS)

ATGGACTTTGAGCAAGTTCTCAATCTCTTCGATTTATTCTGGTTCGAGCGTAAAATCTTCAACAAACACCCCTTTTTGAGCAAAGAAATCGTCGGAGCGGAGTCGAGGAGAAGGCCTAGAGGGAGAAGAATGAAGGGGTCGGAAAGTAGGAGTCTTTTGGAGCTGGAATTTGAGGAGCTAAAAGGGTTAATGGATTTAGGATTCGTTTTCTCCGAAGAGGATAAAGGTTCGAGCTTGGCATCGATAGTTCCGGGATTAAACAGGCTAGGAAAAAGAGAAGAAGAAGAAGAAAGAAAGTTGTGTGGTGAAATTTCGAGGCCTTATCTTTCAGAAGCTTGGGAGGCTATGGAGGAAGAAGAAGAGAAATTGGGGAAGCCATTGATGATGAAATGGAAGCTTCCTTATAATCAGATTCATATGAAAGTTAATCTCAAATGGTGGGCTCATGTTGTTGCTTCAACGGTTAGATGA

Protein sequence

MDFEQVLNLFDLFWFERKIFNKHPFLSKEIVGAESRRRPRGRRMKGSESRSLLELEFEELKGLMDLGFVFSEEDKGSSLASIVPGLNRLGKREEEEERKLCGEISRPYLSEAWEAMEEEEEKLGKPLMMKWKLPYNQIHMKVNLKWWAHVVASTVR
BLAST of Lsi02G011210 vs. TrEMBL
Match: A0A0A0LT30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181530 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.7e-65
Identity = 130/165 (78.79%), Postives = 142/165 (86.06%), Query Frame = 1

Query: 2   DFEQVLNLFDLFWFERKIFNKHPFLSKEIVGAESRRRPRGRRMKGSESRSLLELEFEELK 61
           DFEQVLNLFD FWF+RKIFNKHPF SKEI GAESRR+PRGR+ +G+E+RS LELEFEELK
Sbjct: 3   DFEQVLNLFDSFWFKRKIFNKHPFPSKEIAGAESRRKPRGRKTRGAENRSQLELEFEELK 62

Query: 62  GLMDLGFVFSEEDKGSSLASIVPGLNRLGKR--EEEEERKLCGEISRPYLSEAWEAMEEE 121
           G MDLGFVFSEEDKGS LASIVPGLN LGKR  EEEEE+KLCGEISRPYLSEAWE MEEE
Sbjct: 63  GFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEEEQKLCGEISRPYLSEAWETMEEE 122

Query: 122 EE--------KLGKPLMMKWKLPYNQIHMKVNLKWWAHVVASTVR 157
           EE        +L KPLMMKW+ P N+IHMKVNLKWWAH VAST++
Sbjct: 123 EEEEEEEEKVELKKPLMMKWRFPSNEIHMKVNLKWWAHAVASTIK 167

BLAST of Lsi02G011210 vs. TrEMBL
Match: A0A0A0LV26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G470240 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.1e-46
Identity = 112/165 (67.88%), Postives = 117/165 (70.91%), Query Frame = 1

Query: 25  FLSKEIVGAES-----------------RRRPRGRRMKGSESRSLLELEFEELKGLMDLG 84
           F SK+I GAES                 RRR RGRR + SESRSL ELEFEELKG MDLG
Sbjct: 87  FSSKDIAGAESPETSHKVEIERRPKTEYRRRLRGRRTRRSESRSLSELEFEELKGFMDLG 146

Query: 85  FVFSEEDKGSSLASIVPGLNRLGKREE-------------EEERKLCGEISRPYLSEAWE 144
           FVFSEEDKGSSLASIVPGLNRLGKREE             EEERKL GEISRPYLSEAWE
Sbjct: 147 FVFSEEDKGSSLASIVPGLNRLGKREEKGNKEGEEEEEEKEEERKLGGEISRPYLSEAWE 206

Query: 145 AMEEEEEK---LGKPLMMKWKLPYNQIHMKVNLKWWAHVVASTVR 157
           A+ EEEEK   L +PLMMKW+ P NQI MK NLKWWAH VASTVR
Sbjct: 207 AIAEEEEKEELLKRPLMMKWRFPSNQIDMKDNLKWWAHAVASTVR 251

BLAST of Lsi02G011210 vs. TrEMBL
Match: A0A151R8R0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_039809 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.1e-29
Identity = 76/116 (65.52%), Postives = 88/116 (75.86%), Query Frame = 1

Query: 45  KGSESRSLLELEFEELKGLMDLGFVFSEEDKGSSLASIVPGLNRLGKREEEEERKLCGEI 104
           K  ES+SL +LEFEELKG MDLGFVFSEEDK SSLASI+PGL RLGK+EE++E   C EI
Sbjct: 128 KRRESKSLSDLEFEELKGFMDLGFVFSEEDKDSSLASIIPGLQRLGKKEEDQEDD-CEEI 187

Query: 105 S--RPYLSEAWEAMEEEEEKLGKPLMMKWKLP--YNQIHMKVNLKWWAHVVASTVR 157
           S  RPYLSEAWEA E +  K   PL + WK+P   N+  MK +L+WWAH VASTVR
Sbjct: 188 SVPRPYLSEAWEAQEYDRRKKENPL-VNWKMPAFNNETDMKDSLRWWAHTVASTVR 241

BLAST of Lsi02G011210 vs. TrEMBL
Match: B9S8C1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1250530 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.0e-29
Identity = 78/144 (54.17%), Postives = 101/144 (70.14%), Query Frame = 1

Query: 24  PFLSKEIVGAESRRRPRGRRMKGSE--SRSLLELEFEELKGLMDLGFVFSEEDKGSSLAS 83
           P  ++ +   ES ++    R KG +  S+SL ELEFEE+KG MDLGFVFSEEDK SSL S
Sbjct: 152 PLQTERLNVQESPKKKARSRRKGKKALSKSLSELEFEEVKGFMDLGFVFSEEDKDSSLVS 211

Query: 84  IVPGLNRLGKREEEEERKL-------CGEISRPYLSEAWEAMEEEEEKLGKPLMMKWKLP 143
           I+PGL RLG +++EEE+K         G +SRPYLSEAWEA++  +++  +PL M W++P
Sbjct: 212 IIPGLQRLGNKDQEEEKKEEKNSAFDEGAVSRPYLSEAWEALDNRKKE--EPL-MNWRIP 271

Query: 144 --YNQIHMKVNLKWWAHVVASTVR 157
              N+I MK NLKWWAH VASTVR
Sbjct: 272 ASTNEIDMKYNLKWWAHTVASTVR 292

BLAST of Lsi02G011210 vs. TrEMBL
Match: A0A151S6D8_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_027836 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.0e-29
Identity = 88/186 (47.31%), Postives = 110/186 (59.14%), Query Frame = 1

Query: 1   MDFEQVLNLFDLFWFERKIFNKHPFLS-------------KE-----IVGAES------- 60
           MD E+VL LFD  WF  +   ++   S             KE     ++  +S       
Sbjct: 1   MDAEEVLKLFDSCWFGIQYLKEYTSFSAPTSSHENSDHQIKEPSEPMLLRIQSTQVQHEV 60

Query: 61  ---RRRPRGRRMKGSESRSLLELEFEELKGLMDLGFVFSEEDKGSSLASIVPGLNRLGKR 120
              +   R  R K  +S+SL +LEFEELKG MDLGFVFSEEDK SSLASI+PGL RLGK 
Sbjct: 61  LPKKNITRRERKKKRQSKSLSDLEFEELKGFMDLGFVFSEEDKDSSLASIIPGLQRLGKS 120

Query: 121 EEEEERKLCGEISRPYLSEAWEAMEEEEEKLGKPLMMKWKLP--YNQIHMKVNLKWWAHV 157
           +EEEE      + RPYLSEAW+ ++E  +K   PL M WK+P   N+I +K NL+WWAH 
Sbjct: 121 DEEEEDSDESSVQRPYLSEAWK-VQERRKKENNPL-MNWKIPPLNNEIDIKDNLRWWAHT 180

BLAST of Lsi02G011210 vs. TAIR10
Match: AT2G42760.1 (AT2G42760.1 unknown protein)

HSP 1 Score: 97.4 bits (241), Expect = 8.1e-21
Identity = 59/138 (42.75%), Postives = 87/138 (63.04%), Query Frame = 1

Query: 34  ESRRRPRGRRMKGSESRSLLELEFEELKGLMDLGFVFSEED-KGSSLASIVPGLNRLGKR 93
           + +++ +   ++  + +S+ +LE+EELKG MDLGFVFSE+D K S L SI+PGL RL K+
Sbjct: 129 QRKKKKKKSNVRTRKGKSMSDLEYEELKGFMDLGFVFSEDDHKDSDLVSILPGLQRLVKK 188

Query: 94  ---------EEEEERKLCG-EISRPYLSEAWEAMEEEEEKLGKPLMMKWKLP----YNQI 153
                    EEEEE K+ G   +RPYLSEAW+     + K      +KW++P     +++
Sbjct: 189 DDGVTKEEEEEEEEDKIGGNRAARPYLSEAWDHCGGRKGKKQITPEIKWRVPAPAAASEV 248

Query: 154 HMKVNLKWWAHVVASTVR 157
            +K NL+ WAH VAST+R
Sbjct: 249 DLKDNLRLWAHAVASTIR 266

BLAST of Lsi02G011210 vs. NCBI nr
Match: gi|778665020|ref|XP_011648467.1| (PREDICTED: cyclin-dependent kinase 11B-like [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 3.8e-65
Identity = 130/165 (78.79%), Postives = 142/165 (86.06%), Query Frame = 1

Query: 2   DFEQVLNLFDLFWFERKIFNKHPFLSKEIVGAESRRRPRGRRMKGSESRSLLELEFEELK 61
           DFEQVLNLFD FWF+RKIFNKHPF SKEI GAESRR+PRGR+ +G+E+RS LELEFEELK
Sbjct: 3   DFEQVLNLFDSFWFKRKIFNKHPFPSKEIAGAESRRKPRGRKTRGAENRSQLELEFEELK 62

Query: 62  GLMDLGFVFSEEDKGSSLASIVPGLNRLGKR--EEEEERKLCGEISRPYLSEAWEAMEEE 121
           G MDLGFVFSEEDKGS LASIVPGLN LGKR  EEEEE+KLCGEISRPYLSEAWE MEEE
Sbjct: 63  GFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEEEQKLCGEISRPYLSEAWETMEEE 122

Query: 122 EE--------KLGKPLMMKWKLPYNQIHMKVNLKWWAHVVASTVR 157
           EE        +L KPLMMKW+ P N+IHMKVNLKWWAH VAST++
Sbjct: 123 EEEEEEEEKVELKKPLMMKWRFPSNEIHMKVNLKWWAHAVASTIK 167

BLAST of Lsi02G011210 vs. NCBI nr
Match: gi|700210512|gb|KGN65608.1| (hypothetical protein Csa_1G470240 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 1.2e-45
Identity = 112/165 (67.88%), Postives = 117/165 (70.91%), Query Frame = 1

Query: 25  FLSKEIVGAES-----------------RRRPRGRRMKGSESRSLLELEFEELKGLMDLG 84
           F SK+I GAES                 RRR RGRR + SESRSL ELEFEELKG MDLG
Sbjct: 87  FSSKDIAGAESPETSHKVEIERRPKTEYRRRLRGRRTRRSESRSLSELEFEELKGFMDLG 146

Query: 85  FVFSEEDKGSSLASIVPGLNRLGKREE-------------EEERKLCGEISRPYLSEAWE 144
           FVFSEEDKGSSLASIVPGLNRLGKREE             EEERKL GEISRPYLSEAWE
Sbjct: 147 FVFSEEDKGSSLASIVPGLNRLGKREEKGNKEGEEEEEEKEEERKLGGEISRPYLSEAWE 206

Query: 145 AMEEEEEK---LGKPLMMKWKLPYNQIHMKVNLKWWAHVVASTVR 157
           A+ EEEEK   L +PLMMKW+ P NQI MK NLKWWAH VASTVR
Sbjct: 207 AIAEEEEKEELLKRPLMMKWRFPSNQIDMKDNLKWWAHAVASTVR 251

BLAST of Lsi02G011210 vs. NCBI nr
Match: gi|1012327180|gb|KYP38917.1| (hypothetical protein KK1_039809 [Cajanus cajan])

HSP 1 Score: 136.3 bits (342), Expect = 4.4e-29
Identity = 76/116 (65.52%), Postives = 88/116 (75.86%), Query Frame = 1

Query: 45  KGSESRSLLELEFEELKGLMDLGFVFSEEDKGSSLASIVPGLNRLGKREEEEERKLCGEI 104
           K  ES+SL +LEFEELKG MDLGFVFSEEDK SSLASI+PGL RLGK+EE++E   C EI
Sbjct: 128 KRRESKSLSDLEFEELKGFMDLGFVFSEEDKDSSLASIIPGLQRLGKKEEDQEDD-CEEI 187

Query: 105 S--RPYLSEAWEAMEEEEEKLGKPLMMKWKLP--YNQIHMKVNLKWWAHVVASTVR 157
           S  RPYLSEAWEA E +  K   PL + WK+P   N+  MK +L+WWAH VASTVR
Sbjct: 188 SVPRPYLSEAWEAQEYDRRKKENPL-VNWKMPAFNNETDMKDSLRWWAHTVASTVR 241

BLAST of Lsi02G011210 vs. NCBI nr
Match: gi|223538493|gb|EEF40098.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 136.0 bits (341), Expect = 5.8e-29
Identity = 78/144 (54.17%), Postives = 101/144 (70.14%), Query Frame = 1

Query: 24  PFLSKEIVGAESRRRPRGRRMKGSE--SRSLLELEFEELKGLMDLGFVFSEEDKGSSLAS 83
           P  ++ +   ES ++    R KG +  S+SL ELEFEE+KG MDLGFVFSEEDK SSL S
Sbjct: 152 PLQTERLNVQESPKKKARSRRKGKKALSKSLSELEFEEVKGFMDLGFVFSEEDKDSSLVS 211

Query: 84  IVPGLNRLGKREEEEERKL-------CGEISRPYLSEAWEAMEEEEEKLGKPLMMKWKLP 143
           I+PGL RLG +++EEE+K         G +SRPYLSEAWEA++  +++  +PL M W++P
Sbjct: 212 IIPGLQRLGNKDQEEEKKEEKNSAFDEGAVSRPYLSEAWEALDNRKKE--EPL-MNWRIP 271

Query: 144 --YNQIHMKVNLKWWAHVVASTVR 157
              N+I MK NLKWWAH VASTVR
Sbjct: 272 ASTNEIDMKYNLKWWAHTVASTVR 292

BLAST of Lsi02G011210 vs. NCBI nr
Match: gi|1012339124|gb|KYP50362.1| (hypothetical protein KK1_027836 [Cajanus cajan])

HSP 1 Score: 136.0 bits (341), Expect = 5.8e-29
Identity = 88/186 (47.31%), Postives = 110/186 (59.14%), Query Frame = 1

Query: 1   MDFEQVLNLFDLFWFERKIFNKHPFLS-------------KE-----IVGAES------- 60
           MD E+VL LFD  WF  +   ++   S             KE     ++  +S       
Sbjct: 1   MDAEEVLKLFDSCWFGIQYLKEYTSFSAPTSSHENSDHQIKEPSEPMLLRIQSTQVQHEV 60

Query: 61  ---RRRPRGRRMKGSESRSLLELEFEELKGLMDLGFVFSEEDKGSSLASIVPGLNRLGKR 120
              +   R  R K  +S+SL +LEFEELKG MDLGFVFSEEDK SSLASI+PGL RLGK 
Sbjct: 61  LPKKNITRRERKKKRQSKSLSDLEFEELKGFMDLGFVFSEEDKDSSLASIIPGLQRLGKS 120

Query: 121 EEEEERKLCGEISRPYLSEAWEAMEEEEEKLGKPLMMKWKLP--YNQIHMKVNLKWWAHV 157
           +EEEE      + RPYLSEAW+ ++E  +K   PL M WK+P   N+I +K NL+WWAH 
Sbjct: 121 DEEEEDSDESSVQRPYLSEAWK-VQERRKKENNPL-MNWKIPPLNNEIDIKDNLRWWAHT 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LT30_CUCSA2.7e-6578.79Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181530 PE=4 SV=1[more]
A0A0A0LV26_CUCSA8.1e-4667.88Uncharacterized protein OS=Cucumis sativus GN=Csa_1G470240 PE=4 SV=1[more]
A0A151R8R0_CAJCA3.1e-2965.52Uncharacterized protein OS=Cajanus cajan GN=KK1_039809 PE=4 SV=1[more]
B9S8C1_RICCO4.0e-2954.17Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1250530 PE=4 SV=1[more]
A0A151S6D8_CAJCA4.0e-2947.31Uncharacterized protein OS=Cajanus cajan GN=KK1_027836 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G42760.18.1e-2142.75 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778665020|ref|XP_011648467.1|3.8e-6578.79PREDICTED: cyclin-dependent kinase 11B-like [Cucumis sativus][more]
gi|700210512|gb|KGN65608.1|1.2e-4567.88hypothetical protein Csa_1G470240 [Cucumis sativus][more]
gi|1012327180|gb|KYP38917.1|4.4e-2965.52hypothetical protein KK1_039809 [Cajanus cajan][more]
gi|223538493|gb|EEF40098.1|5.8e-2954.17conserved hypothetical protein [Ricinus communis][more]
gi|1012339124|gb|KYP50362.1|5.8e-2947.31hypothetical protein KK1_027836 [Cajanus cajan][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012881DUF1685
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G011210.1Lsi02G011210.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012881Protein of unknown function DUF1685PFAMPF07939DUF1685coord: 57..87
score: 6.
NoneNo IPR availablePANTHERPTHR31865FAMILY NOT NAMEDcoord: 34..156
score: 9.5
NoneNo IPR availablePANTHERPTHR31865:SF7SUBFAMILY NOT NAMEDcoord: 34..156
score: 9.5

The following gene(s) are paralogous to this gene:

None