CsaV3_1G017080 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G017080
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 11610931 .. 11611508 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGACTTTGAGCAAGTGCTGAATCTCTTCGATTCTTTTTGGTTCAAGCGTAAAATCTTCAACAAACACCCCTTTCCAAGCAAAGAAATCGCCGGAGCCGAGTCAAGGAGGAAACCTAGGGGAAGAAAAACGAGGGGGGCGGAAAATAGGAGCCAATTGGAGCTGGAATTTGAAGAGCTAAAAGGGTTCATGGATTTGGGATTTGTTTTCTCCGAGGAGGATAAAGGTTCGATCTTGGCGTCCATAGTTCCTGGATTGAATTGGCTAGGAAAAAGGGAAGAAGAAGAAGAAGAAGAACAAAAGTTGTGTGGTGAAATTTCTAGGCCTTATCTTTCAGAAGCTTGGGAGACTATGGAGGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAAAGGTGGAATTGAAGAAGCCATTGATGATGAAATGGAGGTTTCCTTCTAATGAAATTCATATGAAAGTTAATCTCAAATGGTGGGCTCATGCTGTTGCTTCAACTATTAAATGACTCTACTCTAATTTTTTTTCTTCATACTTTTGTTAGGTATAACAGCGATTCAACCTCCAGTTTTTAGGGAGTAA

mRNA sequence

ATGGACGACTTTGAGCAAGTGCTGAATCTCTTCGATTCTTTTTGGTTCAAGCGTAAAATCTTCAACAAACACCCCTTTCCAAGCAAAGAAATCGCCGGAGCCGAGTCAAGGAGGAAACCTAGGGGAAGAAAAACGAGGGGGGCGGAAAATAGGAGCCAATTGGAGCTGGAATTTGAAGAGCTAAAAGGGTTCATGGATTTGGGATTTGTTTTCTCCGAGGAGGATAAAGGTATAACAGCGATTCAACCTCCAGTTTTTAGGGAGTAA

Coding sequence (CDS)

ATGGACGACTTTGAGCAAGTGCTGAATCTCTTCGATTCTTTTTGGTTCAAGCGTAAAATCTTCAACAAACACCCCTTTCCAAGCAAAGAAATCGCCGGAGCCGAGTCAAGGAGGAAACCTAGGGGAAGAAAAACGAGGGGGGCGGAAAATAGGAGCCAATTGGAGCTGGAATTTGAAGAGCTAAAAGGGTTCATGGATTTGGGATTTGTTTTCTCCGAGGAGGATAAAGGTATAACAGCGATTCAACCTCCAGTTTTTAGGGAGTAA

Protein sequence

MDDFEQVLNLFDSFWFKRKIFNKHPFPSKEIAGAESRRKPRGRKTRGAENRSQLELEFEELKGFMDLGFVFSEEDKGITAIQPPVFRE

Homology

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BLAST of CsaV3_1G017080 vs. NCBI nr
Match: XP_011648467.1 (PREDICTED: cyclin-dependent kinase 11B-like [Cucumis sativus] >KGN65040.1 hypothetical protein Csa_1G181530 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 1.2e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MDDFEQVLNLFDSFWFKRKIFNKHPFPSKEIAGAESRRKPRGRKTRGAENRSQLELEFEE 60
          MDDFEQVLNLFDSFWFKRKIFNKHPFPSKEIAGAESRRKPRGRKTRGAENRSQLELEFEE
Sbjct: 1  MDDFEQVLNLFDSFWFKRKIFNKHPFPSKEIAGAESRRKPRGRKTRGAENRSQLELEFEE 60

Query: 61 LKGFMDLGFVFSEEDKG 78
          LKGFMDLGFVFSEEDKG
Sbjct: 61 LKGFMDLGFVFSEEDKG 77

[Close]

BLAST of CsaV3_1G017080 vs. NCBI nr
Match: XP_016898936.1 (PREDICTED: uncharacterized protein LOC103489359 [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 61/151 (40.40%), Postives = 69/151 (45.70%), Query Frame = 0


Query: 3   DFEQVLNLFDSFWFKRKIFNKHP------------------------------------- 62
           DFEQ+LNLFDSFWF+R +FNKHP                                     
Sbjct: 2   DFEQLLNLFDSFWFERGVFNKHPFLSNLQPQIQDPDSLPKESFIIPRLPTRSISEDLSSK 61

Query: 63  ----------------------FPSKEIAGAES-----------------RRKPRGRKTR 78
                                 F SK+IAGAES                 RR+ RGR+TR
Sbjct: 62  LSFMSSSNSPDSVLFSPKLQTIFSSKDIAGAESPETSRKLEIERRPKTEYRRRFRGRRTR 121

[Close]

BLAST of CsaV3_1G017080 vs. NCBI nr
Match: KGN65608.1 (hypothetical protein Csa_1G470240 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 58/154 (37.66%), Postives = 68/154 (44.16%), Query Frame = 0


Query: 3   DFEQVLNLFDSFWFKRKIFNKHPFP----------------------------------- 62
           DF+ +LNLFDSFWF+R++ N HPFP                                   
Sbjct: 2   DFDHLLNLFDSFWFQRQVLNNHPFPSNPQILQPQIQDPDPLPKESFLIPRLRTRSISEDL 61

Query: 63  ---------------------------SKEIAGAES-----------------RRKPRGR 78
                                      SK+IAGAES                 RR+ RGR
Sbjct: 62  SSKLSFMSNSNSPDSVLLSPKLQTIFSSKDIAGAESPETSHKVEIERRPKTEYRRRLRGR 121

[Close]

BLAST of CsaV3_1G017080 vs. NCBI nr
Match: XP_011648503.1 (PREDICTED: uncharacterized protein LOC105434498 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 8.4e-13
Identity = 57/153 (37.25%), Postives = 67/153 (43.79%), Query Frame = 0


Query: 3   DFEQVLNLFDSFWFKRKIFNKHPFP----------------------------------- 62
           DF+ +LNLFDSFWF+R++ N HPFP                                   
Sbjct: 2   DFDHLLNLFDSFWFQRQVLNNHPFPSNPQILQPQIQDPDPLPKESFLIPRLRTRSISEDL 61

Query: 63  ---------------------------SKEIAGAES-----------------RRKPRGR 77
                                      SK+IAGAES                 RR+ RGR
Sbjct: 62  SSKLSFMSNSNSPDSVLLSPKLQTIFSSKDIAGAESPETSHKVEIERRPKTEYRRRLRGR 121

[Close]

BLAST of CsaV3_1G017080 vs. NCBI nr
Match: XP_023520224.1 (uncharacterized protein LOC111783529 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.3 bits (181), Expect = 2.3e-10
Identity = 54/154 (35.06%), Postives = 64/154 (41.56%), Query Frame = 0


Query: 3   DFEQVLNLFDSFWFKRKIFNKHPFP----------------------------------- 62
           D EQVLNLFDSFWF+R+IFNKHPFP                                   
Sbjct: 2   DVEQVLNLFDSFWFEREIFNKHPFPTNPQNPRPENQDLDPLENSPPEEAFVPRICPRSIS 61

Query: 63  ------------------------------SKEIAGAES---------------RRKPRG 77
                                         S+++ G E+               RR+  G
Sbjct: 62  EDLSSKLTFMSDSSSPDSVLFSPKLQTILSSQDMGGEEAPEKSRRVVIRQKRKQRRRIGG 121

[Close]

BLAST of CsaV3_1G017080 vs. TAIR10
Match: AT2G42760.1 (unknown protein)

HSP 1 Score: 44.3 bits (103), Expect = 4.6e-05
Identity = 19/27 (70.37%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 49  ENRSQLELEFEELKGFMDLGFVFSEED 76
           + +S  +LE+EELKGFMDLGFVFSE+D
Sbjct: 143 KGKSMSDLEYEELKGFMDLGFVFSEDD 169

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BLAST of CsaV3_1G017080 vs. TrEMBL
Match: tr|A0A0A0LT30|A0A0A0LT30_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181530 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 8.0e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MDDFEQVLNLFDSFWFKRKIFNKHPFPSKEIAGAESRRKPRGRKTRGAENRSQLELEFEE 60
          MDDFEQVLNLFDSFWFKRKIFNKHPFPSKEIAGAESRRKPRGRKTRGAENRSQLELEFEE
Sbjct: 1  MDDFEQVLNLFDSFWFKRKIFNKHPFPSKEIAGAESRRKPRGRKTRGAENRSQLELEFEE 60

Query: 61 LKGFMDLGFVFSEEDKG 78
          LKGFMDLGFVFSEEDKG
Sbjct: 61 LKGFMDLGFVFSEEDKG 77

[Close]

BLAST of CsaV3_1G017080 vs. TrEMBL
Match: tr|A0A1S4DSH1|A0A1S4DSH1_CUCME (uncharacterized protein LOC103489359 OS=Cucumis melo OX=3656 GN=LOC103489359 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.8e-15
Identity = 61/151 (40.40%), Postives = 69/151 (45.70%), Query Frame = 0


Query: 3   DFEQVLNLFDSFWFKRKIFNKHP------------------------------------- 62
           DFEQ+LNLFDSFWF+R +FNKHP                                     
Sbjct: 2   DFEQLLNLFDSFWFERGVFNKHPFLSNLQPQIQDPDSLPKESFIIPRLPTRSISEDLSSK 61

Query: 63  ----------------------FPSKEIAGAES-----------------RRKPRGRKTR 78
                                 F SK+IAGAES                 RR+ RGR+TR
Sbjct: 62  LSFMSSSNSPDSVLFSPKLQTIFSSKDIAGAESPETSRKLEIERRPKTEYRRRFRGRRTR 121

[Close]

BLAST of CsaV3_1G017080 vs. TrEMBL
Match: tr|A0A0A0LV26|A0A0A0LV26_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470240 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 58/154 (37.66%), Postives = 68/154 (44.16%), Query Frame = 0


Query: 3   DFEQVLNLFDSFWFKRKIFNKHPFP----------------------------------- 62
           DF+ +LNLFDSFWF+R++ N HPFP                                   
Sbjct: 2   DFDHLLNLFDSFWFQRQVLNNHPFPSNPQILQPQIQDPDPLPKESFLIPRLRTRSISEDL 61

Query: 63  ---------------------------SKEIAGAES-----------------RRKPRGR 78
                                      SK+IAGAES                 RR+ RGR
Sbjct: 62  SSKLSFMSNSNSPDSVLLSPKLQTIFSSKDIAGAESPETSHKVEIERRPKTEYRRRLRGR 121

[Close]

BLAST of CsaV3_1G017080 vs. TrEMBL
Match: tr|A0A0A0LGR8|A0A0A0LGR8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G058630 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-05
Identity = 42/123 (34.15%), Postives = 52/123 (42.28%), Query Frame = 0


Query: 5   EQVLNLFDSFWFKRKIFNKHPF--------------PSKEIAGAESRRKPRGRKTRGAEN 64
           E++L LFD FWF+R+IF ++P               P  E A + S   P  +    + N
Sbjct: 4   EKILPLFDLFWFQREIFARNPLLKTHSSAPEIHFQSPDSEYAVSSSMNFPASKTAVHSTN 63

Query: 65  RSQL----------------------------------ELEFEELKGFMDLGFVFSEEDK 80
             +L                                  ELEFEELKGFMDLGFVFSEEDK
Sbjct: 64  NQKLETIVSSKVREFSVEENYEKMKIMGKVKRLSKSLSELEFEELKGFMDLGFVFSEEDK 123

[Close]

BLAST of CsaV3_1G017080 vs. TrEMBL
Match: tr|A0A151TL50|A0A151TL50_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_024101 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.5e-05
Identity = 45/115 (39.13%), Postives = 50/115 (43.48%), Query Frame = 0


Query: 5   EQVLNLFDSFWFKRKIFNKH-----------------------------PFPSKEIA--G 64
           EQVL L DSFWF+  I                                 P P+ E+    
Sbjct: 4   EQVLRLLDSFWFETSILTNRNNNQTPSNQDSHNNLEKVIPLDDAKFVLVPTPTLEVREFS 63

Query: 65  AESR------RKPRG------RKTRGAENRSQLELEFEELKGFMDLGFVFSEEDK 77
            E R      RK RG      R  +G   RS  ELEF+ELKGFMDLGFVFSEEDK
Sbjct: 64  CEKREEIKIERKERGFGHGRRRVRKGRTTRSLSELEFKELKGFMDLGFVFSEEDK 118

The following BLAST results are available for this feature:

BLAST of CsaV3_1G017080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648467.1	1.2e-35	100.00	PREDICTED: cyclin-dependent kinase 11B-like [Cucumis sativus] >KGN65040.1 hypoth...	[more]
XP_016898936.1	1.2e-14	40.40	PREDICTED: uncharacterized protein LOC103489359 [Cucumis melo]	[more]
KGN65608.1	1.7e-13	37.66	hypothetical protein Csa_1G470240 [Cucumis sativus]	[more]
XP_011648503.1	8.4e-13	37.25	PREDICTED: uncharacterized protein LOC105434498 [Cucumis sativus]	[more]
XP_023520224.1	2.3e-10	35.06	uncharacterized protein LOC111783529 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_1G017080 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42760.1	4.6e-05	70.37	unknown protein	[more]

BLAST of CsaV3_1G017080 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G017080 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LT30\|A0A0A0LT30_CUCSA	8.0e-36	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181530 PE=4 SV=1	[more]
tr\|A0A1S4DSH1\|A0A1S4DSH1_CUCME	7.8e-15	40.40	uncharacterized protein LOC103489359 OS=Cucumis melo OX=3656 GN=LOC103489359 PE=...	[more]
tr\|A0A0A0LV26\|A0A0A0LV26_CUCSA	1.1e-13	37.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470240 PE=4 SV=1	[more]
tr\|A0A0A0LGR8\|A0A0A0LGR8_CUCSA	1.1e-05	34.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G058630 PE=4 SV=1	[more]
tr\|A0A151TL50\|A0A151TL50_CAJCA	2.5e-05	39.13	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_024101 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G017080.1	CsaV3_1G017080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..51
None	No IPR available	PANTHER	PTHR31865:SF7	SUBFAMILY NOT NAMED	coord: 34..77 coord: 3..30
None	No IPR available	PANTHER	PTHR31865	FAMILY NOT NAMED	coord: 34..77 coord: 3..30

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G017080	CSPI01G15820	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G017080	Cucsa.180450	Cucumber (Gy14) v1	cgycucB290
CsaV3_1G017080	MELO3C025547	Melon (DHL92) v3.5.1	cucmeB014
CsaV3_1G017080	ClCG01G010570	Watermelon (Charleston Gray)	cucwcgB024
CsaV3_1G017080	Lsi02G011210	Bottle gourd (USVL1VR-Ls)	cuclsiB033
CsaV3_1G017080	MELO3C025547.2	Melon (DHL92) v3.6.1	cucmedB025
CsaV3_1G017080	Bhi08G000638	Wax gourd	cucwgoB039

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G017080	Cucurbita maxima (Rimu)	cmacucB0241
CsaV3_1G017080	Cucurbita maxima (Rimu)	cmacucB0255
CsaV3_1G017080	Cucurbita maxima (Rimu)	cmacucB0476
CsaV3_1G017080	Cucurbita moschata (Rifu)	cmocucB0228
CsaV3_1G017080	Cucurbita moschata (Rifu)	cmocucB0241
CsaV3_1G017080	Cucurbita moschata (Rifu)	cmocucB0459
CsaV3_1G017080	Cucurbita pepo (Zucchini)	cpecucB0021
CsaV3_1G017080	Cucurbita pepo (Zucchini)	cpecucB0629
CsaV3_1G017080	Watermelon (97103) v1	cucwmB057
CsaV3_1G017080	Watermelon (97103) v2	cucwmbB008
CsaV3_1G017080	Cucumber (Chinese Long) v3	cuccucB056
CsaV3_1G017080	Silver-seed gourd	carcucB0056
CsaV3_1G017080	Silver-seed gourd	carcucB1083
CsaV3_1G017080	Silver-seed gourd	carcucB1084
CsaV3_1G017080	Cucumber (Gy14) v2	cgybcucB002