Lsi02G004670 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G004670
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RPM1-interacting protein 4 (RIN4) family protein
Location	chr02 : 3902718 .. 3907390 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGCAATTTGGGAAGAGCGGGAACCGATGGGCGAAGGAAAGGACAGAGACCGGAAGAAATACGAGCTTGGGGACCCGGTTCACTGAAATCGGACTTTGGGTTTGGGCACCATTTTATGAACTCCAAAATAAATAAATAAAAGTTAAATTACAATTGTAGTTCTTCACAATAATATTTTTAATTTGGGCTCTTTTAAGATATAAAAAAAATGAGTCAAACTATTTACAAATATAAAATTTTTTTACCGTCTATCACTAATAGATCGCAATAGAATTCTATCGCTCATGCGATAGAATTTATTTGCTTGAGCGATAGAATTCTATCGCGGTTTATCACTGATAGACTGTGAAATTTTTTTATATTTGTAAATAGTTTGATGCTTTTTCTATTTATAGTAATTTCCCTTTTAATTTTCTATGTTAATAGTTTATTTTGAAAAATTCTATATTTTTAATAGTTAAGTGATCTACTATGTATAAATTTGAATGGTTCTCATATCATCATACCAACAGTTAGGATAGTTCTTCCTTCCACTATTGTCATTTCTTCAACAGAAAATGATTTGTTAATACTTGGATTCCTCTCTTTGCAAGAGTTTTGAAAATAAATATTGATGCTTCTTGTCTCTCTTTCGTACTGGCACAAGCTTAGGTATTACTATTCAGAATGCTAACAATTCTCTTGTGTTGGTTGTTGCCAAATTTTTTTTAGTGTTTGTGGACATTCATCTCGCTGAAGCTCTCGCTATGCTGCTCGATCTACATGAAACTTAAGGTATAGTCTCTCATATGTGAGTGGAATCGAATGTCCAATTATAAATACCGACTATCCACGAAAACAAGCTCCAATTTTCTCCTCAAGGTGCCATTTTGGAGGAAATTTGGAGTTGGATGTTGATTGTGGGAATTAAAAGATATAGTTTCAATCCTAGATCTACAAATTATGTTGCTCATAATATTGTTGGGTGGGCTTTAGCTAATTATGAGATTAAGGATGTTTGGTCTTGGAGTACTTAATGTCTTTTTTAGTTCTTGACCTGATCAATGAAGTTCTTTTATAAAATAAAAAGATACAAATTTGAATTTTATATTTAATATAATCCTAGATTTAAAAGTTTATAAATCAAAATCATATTTAAATATTAGTTATATCAATAAAGATAATTTGCAAAATGATAATATGCACTTCATTCACTAATTTTTTCTTTAAGTTCAACATGTAAGAGTTGAAAATCAAATCTCTAACCTCTTGATTGAAATTATATGTCTTGGCCTATTTGAGTTATGTTCAAATCAACGTTTTATTCATTAAGTTATACTAATAAGAGCCAATATAAACTGAAATTAATGGTAATTGACATATACTTCTTCTTTGAAAGTCTTCCTTAAAAAAATGCTAAATTATATATAATACCCCTAAACTTTGTATTTTGCGTCAAAAATACCCTTGAACTTTCAAAAGTTTCAAAAATACCTTTAAACTTTAAAAAAAAAAGTTAAAAAATATATATGAACAGAAACTGTTAATATTGTCTCCTTATTTCTCTATTTTTCCTCTTTTTTCTTCACTATCTTCTTCAATACCCTCTTACTCCCCTTTTTGTTTACTGTTTGACATTTTTTTTTATCTAAAAATAAATAAATAAGTAAAACTGCTTACTTCAATTAGACTATAATAAGAAGAAACATAACAATGAATGCACCAAGGAGTTTTAGGACTTAAATGTTTTTGACAAAATTGTACGTTAATAGTTGAGTATGTGTTAATAACCAAATACATTTTTAGGGTTGTTTTTTTTTTTAACAAAGATACAAAATGTCACGATAGACAATGATGGACACTGATAGGCTATTATCATCTATCACTGTCCATTAGTGATAGATACTGATAGATGCCTATTAGTGATAGATCATATTTTGTTATATCTAAAAATATTTTCAGCAGTTTTACTATTTAAAATAATTATCTTTCTTTATTTAACTATTTTTATCGTTTTGGTATGAGATTTGATTTAAGAATTTTGTGAGATTTGGTAGGATTTTATGTTTGAACTTAAAAATTTGATATATTCGAAAAAATAGAAGAAAAATGATGGTATCCATACAATGATGATATCTTTATAATATGTTTTAAAATTAGTTCTTTTCGAATTCCAGAAAACTTCAAACAAATTGATCATCACAATGGTATGAGCATTTTAAAATATTCTTTTGAAATTTTATAGTTATTTTCGCAATGAGGTATTAATGGTTTCTGTTCATCTACTCACGATGATAGTATTTTTGAATTTTTTTTAAACTTAATGATATTTTTTAAACTTTTAAAAGTTCATGAGTATTTAAAAAATATAATATTAGTGATTTGCATCCAAAATTAATGGTAAAAGTATTTTTAAACTTTTAAAAATTTCGAGATATTTCTGATAAAAAATAAAAAATTGAAGGATTTTTAAAATTTTTTTTTTTTGCCAATATATATTATATATATATATATATATATATATATATTAGCAAGAGAGCGAACAATATTTTGAGAAAATGAATTTATTTATAAGAAAGTTCATTGGAATAATCGGTTGGGAAGTTAAAAGCGACGTGCAACCGACGTTATCTTGCGCGTCGTTTCAATCTCAACTGTCTCTCTCTTAAAGAAATTCTGTGTTTCTTCTTGCAAAGTTTTCCTTTTCCATCCTGTTTTGCTCGCACTCCCTTTTTGTTTCTTTCCGTTTTTGGTCTTCTCCTATTCGATCCCCGTCCCTTTCGTCCTGCAACCATGGCATCGGTAAGGATTTCTACACCATTTCTCTGCTCTTTCTTTTCTTACATCTTCTGCTTTTATTTACTTGGAGAAGCTGAACTGTTCGCGCTATAATTTCCCTAATCAAAATGCGATTATGGTGTATATTTGAATGATCAGAATGGGTTGTTGATTAGGGGTATATGATTGTAGTCGTAAATTGGGTTATTGACACAAGTTAATATTGTTTAATCAATGATGGCGATATTAGTTATTAGCTGAGATGAAGAAGGGAGATTTTGGTTATTTGTGGTTGGTTTTCTCCTTAGTTCTATTTCGCTTGACGTGTTGGACAACAAAATTGCGTTTGTATTTTTAACAAGCTATGAGCAGGGAAGTATACGAATCTATGAATGAAAATATAGAATGTTCACTGTTGTTTTTTCTGAAGTGTCATCTAATCTAGCTTGATCAAATTTTCAGTCATGGTAGTCTGATTAGGAAGGAGTTAGCTTGGGTATGTAGGTAATCATATTCATAGCCACCATTCTTGCAATGAAATGTTAGCGTATTACAACATTCCAAAACATAGAATACGTTGGGTGTAGACTGGACCAATGACAACATTTATAGCTCTAGTATTCAAGAAGACCATGGGGAGTTTTTTTTTTTAATACTGAAGAGGAATAGGAGAATTTTTAGAACTGACGAGCTGCCTTGGAAGGTTTTTGTCTTTAGCTAGGTTTAATGCCTCTACAGTCTGTTTCTGTGGCGTTTTGTAATTATTATTTAGCCCTTATTTCTGTCCATTGAACCCCTTCTTGTAGCTATAGTATATGTTTTTTGTTCAAGGTCCCCTACATGTTCGGCTTGTCACCAAAGCGAGAACAGTTCAACTGGTATATAAATATGTTAATGACCAAAAGTAGTTCAATCTCTCCACTCCTTATTGTTGGGCTTGTCCTTTTATAAGCTTGCTTGTATTCCATTTCTTTACCATGAAAGTTTTGGTTTTCCATCAGAAAATCATGTAGGATATTGAAAAATACTGATGCAGACAAGGGAGATTGGTTGTATTGCTTATTTGCAGATTAAAGAGTGAAAAAAACCCTTTTTATCCATTCATGTGCCATACCTGAAATAATTCCTGCACTTCCTTTTGTCGATCTTTCTATCTGCTAGGAGAAGACTTACTGTAGGCTACATAGAGTTGCAATGTTGTTAATAAGTAATAATTGCGGCTTTTCCTTTATCTGAAGGCTTATATTTGCAGAGATTACTTTCAACATTTTTGTAAGATGTTAATAGAATACTGAATAAAGAAAGTCTCATGTAGAAATCATTTGTGTTATTACAGCAGGACAAGGGTCGTCCATTGCCAAAGTTTGGTGAATGGGATGTAAATAATCCTGCATCAGCAGAAGGATTTACAGTCATATTTAACAAGGCTAGAAATGAGAAGAAGACCACTGGAACTGCTGCCAATATGGTCCCTCAACAAAGAAATGAACCTGTCTTCAACAATGAAAGTTTCCCTCAGTATCCTCCACCGAAGGTCTATTTAATAGAAAACTTGAGAACCAATTTGTTCTAGATATCTTAAATCTAATCTATTTTTCGGTATTTTGATGCAGAAGAGGTGGTTTTGCTGTGGTTGAAGCCACAGTGGTTTCAAGATCTTGAATTTATGCAATATCTTAAAGCCCGTAAAATTTTGCAGCCTTATCCAACCAACCGCGGACCTTTGACTCTGAGCCCCAACAAAGTTGTTGCACCAACAAATGACTCATACTATTCCTTTTCCCTTTTCACTTTGGCTTTCATGCTTTATCGATGTTATATAATAATTTATATCACATGGTACTCAGTTTATATGTAATGTAATACAGGATGGAAAAGACAAATTACAATGTCAAAATCGCGTTTCAATTTC

mRNA sequence

ATGCTTGCAATTTGGGAAGAGCGGGAACCGATGGGCGAAGGAAAGGACAGAGACCGGAAGAAATACGAGCTTGGGGACCCGCAGGACAAGGGTCGTCCATTGCCAAAGTTTGGTGAATGGGATGTAAATAATCCTGCATCAGCAGAAGGATTTACAGTCATATTTAACAAGGCTAGAAATGAGAAGAAGACCACTGGAACTGCTGCCAATATGGTCCCTCAACAAAGAAATGAACCTGTCTTCAACAATGAAAGTTTCCCTCAAAGAGGTGGTTTTGCTGTGGTTGAAGCCACAGTGGTTTCAAGATCTTGAATTTATGCAATATCTTAAAGCCCGTAAAATTTTGCAGCCTTATCCAACCAACCGCGGACCTTTGACTCTGAGCCCCAACAAAGTTGTTGCACCAACAAATGACTCATACTATTCCTTTTCCCTTTTCACTTTGGCTTTCATGCTTTATCGATGTTATATAATAATTTATATCACATGGTACTCAGTTTATATGTAATGTAATACAGGATGGAAAAGACAAATTACAATGTCAAAATCGCGTTTCAATTTC

Coding sequence (CDS)

ATGCTTGCAATTTGGGAAGAGCGGGAACCGATGGGCGAAGGAAAGGACAGAGACCGGAAGAAATACGAGCTTGGGGACCCGCAGGACAAGGGTCGTCCATTGCCAAAGTTTGGTGAATGGGATGTAAATAATCCTGCATCAGCAGAAGGATTTACAGTCATATTTAACAAGGCTAGAAATGAGAAGAAGACCACTGGAACTGCTGCCAATATGGTCCCTCAACAAAGAAATGAACCTGTCTTCAACAATGAAAGTTTCCCTCAAAGAGGTGGTTTTGCTGTGGTTGAAGCCACAGTGGTTTCAAGATCTTGA

Protein sequence

MLAIWEEREPMGEGKDRDRKKYELGDPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQRGGFAVVEATVVSRS

Homology

[Close]

BLAST of Lsi02G004670 vs. TrEMBL
Match: A0A0A0LRE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050070 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-25
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 1


Query: 28  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFP 87
           QDKGR LPKFG+WDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQ+RNEPVFNNES+P
Sbjct: 62  QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYP 121

Query: 88  Q 89
           Q
Sbjct: 122 Q 122

[Close]

BLAST of Lsi02G004670 vs. TrEMBL
Match: A0A072URP1_MEDTR (RPM1-interacting protein 4 (RIN4) family protein OS=Medicago truncatula GN=MTR_4g104085 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.4e-16
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 1


Query: 28 QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFP 87
          QDKGRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKK T T+ NM   +  +PVF N++ P
Sbjct: 18 QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKK-TNTSINMATPRTADPVFKNDNHP 77

Query: 88 Q 89
          +
Sbjct: 78 K 77

[Close]

BLAST of Lsi02G004670 vs. TrEMBL
Match: B9I3K8_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0012s09410g PE=4 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 5.8e-16
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 1


Query: 30 KGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFN----NES 89
          +GRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKT  + A +V  QR EPVFN    NE+
Sbjct: 1  QGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTKNSPAKVVSPQRTEPVFNKNAKNEN 60

Query: 90 F---PQRGGFAVVE 97
          +   P+R     VE
Sbjct: 61 YEHPPKRRWLCYVE 74

[Close]

BLAST of Lsi02G004670 vs. TrEMBL
Match: K7MLD9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G126900 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.7e-15
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 1


Query: 28 QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESF- 87
          Q+ GRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKT    A   P +R++PVF NE++ 
Sbjct: 4  QENGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTNTATATPTP-RRSDPVFKNENYN 63

Query: 88 -PQRGG 92
           PQ  G
Sbjct: 64 NPQYSG 68

[Close]

BLAST of Lsi02G004670 vs. TrEMBL
Match: A0A0B2PY55_GLYSO (RPM1-interacting protein 4 OS=Glycine soja GN=glysoja_033302 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.7e-15
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 1


Query: 28 QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESF- 87
          Q+ GRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKT    A   P +R++PVF NE++ 
Sbjct: 4  QENGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTNTATATPTP-RRSDPVFKNENYN 63

Query: 88 -PQRGG 92
           PQ  G
Sbjct: 64 NPQYSG 68

[Close]

BLAST of Lsi02G004670 vs. TAIR10
Match: AT5G55850.2 (AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 77.4 bits (189), Expect = 5.7e-15
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 1


Query: 26 DPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTG 67
          D +DKGRPLPKFGEWDVN+PASAEGFTVIFNKAR+EKKT G
Sbjct: 16 DWRDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG 56

[Close]

BLAST of Lsi02G004670 vs. TAIR10
Match: AT2G04410.1 (AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 75.1 bits (183), Expect = 2.8e-14
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 29 DKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFN 83
          DKGRPLPKFGEWDVN+P+SAEGFTVIFNKARNEKK  G + +     ++EP +N
Sbjct: 3  DKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDS---PGKDEPGYN 53

[Close]

BLAST of Lsi02G004670 vs. TAIR10
Match: AT5G63270.1 (AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-13
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 28 QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKT---TGTAAN-MVPQQRNE 79
          ++KG+PLPKFGEWDVNNPASAEGFTVIF+KA +EKKT   +G   N +V  QRN+
Sbjct: 3  ENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQ 57

[Close]

BLAST of Lsi02G004670 vs. TAIR10
Match: AT3G48450.1 (AT3G48450.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 70.1 bits (170), Expect = 9.1e-13
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 1


Query: 29 DKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTA-----ANMVPQQRNEPVFNN 86
          ++ RPLPKFGEWD  NP SAEGFTVIFNKAR++KKT  TA     + + P +  EP  NN
Sbjct: 5  NRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKTMKTAVAGPESIVSPPRNEEPPKNN 64

[Close]

BLAST of Lsi02G004670 vs. TAIR10
Match: AT5G40645.1 (AT5G40645.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 67.4 bits (163), Expect = 5.9e-12
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1


Query: 28 QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNES 86
          Q + RPLPKFGEWDVN+PASAEGFTVIF KAR++KKT   A+     QR +   NN+S
Sbjct: 9  QQQDRPLPKFGEWDVNDPASAEGFTVIFAKARDDKKT--NASGRAASQRRD---NNKS 61

[Close]

BLAST of Lsi02G004670 vs. NCBI nr
Match: gi|449469600|ref|XP_004152507.1| (PREDICTED: RPM1-interacting protein 4 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 2.6e-25
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 1


Query: 28 QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFP 87
          QDKGR LPKFG+WDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQ+RNEPVFNNES+P
Sbjct: 4  QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYP 63

Query: 88 Q 89
          Q
Sbjct: 64 Q 64

[Close]

BLAST of Lsi02G004670 vs. NCBI nr
Match: gi|700209272|gb|KGN64368.1| (hypothetical protein Csa_1G050070 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 2.6e-25
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 1


Query: 28  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFP 87
           QDKGR LPKFG+WDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQ+RNEPVFNNES+P
Sbjct: 62  QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYP 121

Query: 88  Q 89
           Q
Sbjct: 122 Q 122

[Close]

BLAST of Lsi02G004670 vs. NCBI nr
Match: gi|659067399|ref|XP_008439256.1| (PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 3.4e-25
Identity = 56/61 (91.80%), Postives = 60/61 (98.36%), Query Frame = 1


Query: 28 QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFP 87
          QD+GRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTG AANMVP++RNEPVFNNES+P
Sbjct: 4  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNESYP 63

Query: 88 Q 89
          Q
Sbjct: 64 Q 64

[Close]

BLAST of Lsi02G004670 vs. NCBI nr
Match: gi|659067401|ref|XP_008439265.1| (PREDICTED: RPM1-interacting protein 4 isoform X2 [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-24
Identity = 55/60 (91.67%), Postives = 59/60 (98.33%), Query Frame = 1


Query: 29 DKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFPQ 88
          D+GRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTG AANMVP++RNEPVFNNES+PQ
Sbjct: 4  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNESYPQ 63

[Close]

BLAST of Lsi02G004670 vs. NCBI nr
Match: gi|1009130552|ref|XP_015882361.1| (PREDICTED: RPM1-interacting protein 4 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 96.3 bits (238), Expect = 3.4e-17
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 28 QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQQRNEPVFNNESFP 87
          QDKGRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKT+  A  +V  +RN+  + NE++P
Sbjct: 4  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSAAAVKIVTPRRNDSAYKNETYP 63

The following BLAST results are available for this feature:

BLAST of Lsi02G004670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi02G004670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRE5_CUCSA	1.8e-25	93.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050070 PE=4 SV=1	[more]
A0A072URP1_MEDTR	4.4e-16	72.13	RPM1-interacting protein 4 (RIN4) family protein OS=Medicago truncatula GN=MTR_4...	[more]
B9I3K8_POPTR	5.8e-16	64.86	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0012s09410g P...	[more]
K7MLD9_SOYBN	1.7e-15	68.18	Uncharacterized protein OS=Glycine max GN=GLYMA_17G126900 PE=4 SV=1	[more]
A0A0B2PY55_GLYSO	1.7e-15	68.18	RPM1-interacting protein 4 OS=Glycine soja GN=glysoja_033302 PE=4 SV=1	[more]

BLAST of Lsi02G004670 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G55850.2	5.7e-15	87.80	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT2G04410.1	2.8e-14	68.52	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G63270.1	1.1e-13	67.27	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT3G48450.1	9.1e-13	56.45	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G40645.1	5.9e-12	62.07	RPM1-interacting protein 4 (RIN4) family protein	[more]

BLAST of Lsi02G004670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469600\|ref\|XP_004152507.1\|	2.6e-25	93.44	PREDICTED: RPM1-interacting protein 4 [Cucumis sativus]	[more]
gi\|700209272\|gb\|KGN64368.1\|	2.6e-25	93.44	hypothetical protein Csa_1G050070 [Cucumis sativus]	[more]
gi\|659067399\|ref\|XP_008439256.1\|	3.4e-25	91.80	PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo]	[more]
gi\|659067401\|ref\|XP_008439265.1\|	1.3e-24	91.67	PREDICTED: RPM1-interacting protein 4 isoform X2 [Cucumis melo]	[more]
gi\|1009130552\|ref\|XP_015882361.1\|	3.4e-17	71.67	PREDICTED: RPM1-interacting protein 4 isoform X1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G004670.1	Lsi02G004670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 29..64 score: 7.2
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 14..77 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G004670	Csa1G050070	Cucumber (Chinese Long) v2	culsiB022
Lsi02G004670	CSPI01G09140	Wild cucumber (PI 183967)	cpilsiB021
Lsi02G004670	Cucsa.391700	Cucumber (Gy14) v1	cgylsiB633
Lsi02G004670	CmaCh18G002090	Cucurbita maxima (Rimu)	cmalsiB370
Lsi02G004670	CmoCh18G001860	Cucurbita moschata (Rifu)	cmolsiB356
Lsi02G004670	ClCG03G003430	Watermelon (Charleston Gray)	lsiwcgB184
Lsi02G004670	Cla97C03G054510	Watermelon (97103) v2	lsiwmbB176
Lsi02G004670	Cp4.1LG09g09750	Cucurbita pepo (Zucchini)	cpelsiB026
Lsi02G004670	CsGy1G009170	Cucumber (Gy14) v2	cgyblsiB018
Lsi02G004670	Carg06770	Silver-seed gourd	carlsiB447
Lsi02G004670	CsaV3_1G009220	Cucumber (Chinese Long) v3	cuclsiB022

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G004670	Silver-seed gourd	carlsiB918
Lsi02G004670	Wax gourd	lsiwgoB240
Lsi02G004670	Cucurbita maxima (Rimu)	cmalsiB202
Lsi02G004670	Cucurbita moschata (Rifu)	cmolsiB192
Lsi02G004670	Cucurbita pepo (Zucchini)	cpelsiB423
Lsi02G004670	Melon (DHL92) v3.5.1	lsimeB179
Lsi02G004670	Watermelon (97103) v1	lsiwmB184
Lsi02G004670	Melon (DHL92) v3.6.1	lsimedB189