CsGy1G009170 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G009170
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	RPM1-interacting protein 4 (RIN4) family protein
Location	Chr1 : 5729909 .. 5732951 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTGGAACAAGAAAGAGAGAGACAAAGAGAAGGAGACGGAGATGGTTGCAATTTGGGAAGAGCGGGAACCGACGGGCGAAGGAAAAGACAGAGAGACCGGAAGAAATAGGAGATTGGTGATCCCGGTTCACTAAAAATCGGTCTTTGGGTTTGCCCACTATTTTACTCTCTCCATTGTTCATTTTTTAGTCCTAATCTCCATCGTTATTGAATTATAATAGTTTGCAATCAAATACACGATATTACTATAGTTTAAATTATAATAATTCGTATTTGAAAAACTATATTAGTCTGATAATTTAATAACTTTTAAAGTTGAACCAAACATGGTTAATATAATTTCAAATAATTTTTGTTTTAAAATACTCCTAAATATTAAATAAAGTTATTATAAATTTAGTCGATGGAGAAGGAACCTTTTATTATTCTTCTTTAATAACATCTTTTAAAAAAGAAGTTCTAACTTAATTGATGTACTAAAGTAAATTTAAATTTTATGTTTAATAGAATTTTATACTTTTGATTTTGTATTTGTGATATTTAACTAATGCAAAAGTTATAGATTAGTCTTTTAATAAAAATTATGCGACAATTTAAATAAGCATGAACCCTCAAGTTTAAGAGTTAAATGAGTAATTTATTGAGAAAAAGTATAAGTTTTATACCGGTAAGAAAAAACCTCTCTCCTCTTAAATTTTCTTAAAATTAAACGTGTGACAGATTTAATGTATATGGTGCAAAGTAAATTTTCTTAGAATTAATTGTTAATCTTGGTTTCGAATGTGTGATAGTTTAATGTCTATGGTGAAAAATGTCACTATACTTAACATTAGCTACTCACGCAGAAAAGTCATTAGGAAAAGAGACATTTGACAAGAATATTAGATTGAAAAACAAAACAATGTAATAAAAATTAAAATGATTCATTTAAAAAGTCTATGAACCAAAATAGATATCTTGGAAAAATAAGAGAGCAAATTACGAATGAATTTGAAAATTTATAGATCAAACACATATCTAACACATGAAATGTGCAAAATGCAAAATAAATTCACTATAATTTTAATTTGATTCAACCATCCACACAAGTGGAGAGATTCGAATTTTTAATCTTTAAAAAAAATATGTCTTAACTAGTTTGAATACGTTCAAATCAACCTTTTATTCATTAAATTACACTAATAAAAATGAGCGTATATCGAATATATTCTTTTCATAAAACTAATCCTAAAAGAAATTAGTAGAAAATTAATTAGGGTGTATTTTAACGAAAAAAAAATGGTGGGAAGAATTTATATTTATATGGAGGGTTCATAGAGATAATGAGCGACGTGCAACCGTCGTTAACAATCTCAACTGTCGCTCTCGTAACAAACTATTGTGTGTTACTGTTGACAAATTTGTCCTTTTCCATCCTGTATTGCTCGCACTCTCTTTTTTCCCTTTCCGTTTTTGGTCTTCTCCTCTCCGATCCACGGCCCTTTCGTCCTGCAATCATGGCATCGGTAAAATTTCTACATCATTTCTCTGTTTTTATTTACTTGGAGAAGCTCAACTATCCGTGCTGTTTTATTTCCCTATTCAAAATGTGATTGTGGGAATTTGAATGATTAGAATGGATTGTTGTTTTGGGTATATGATCGTAGTCGTAGAATTTGGTTATCAACAAAGGTTGATATTGTTTAATTAACGATGACGGTATTAGCTGAGATGAAGAAGGGAATTTTGATTCCTAATTTGGAGTTAATAGTGCTTTAGAATGCAATAAATAATCGCCATGGTTATCTGTGGTTGGTTTTCTCCTCAGTGTTATTATGTTGTATGACGTGTTGGAGAACAAAATTGGTGTAGAGATTTCATCTTGTTCCATTTGTAATTCTAACAAGCTATGAGCAGGGAAGTGTAAGAATCCATGAATGAAAATATAGAATAATATTCATAGCTTGCCATGAAATGTTGTCGTATTACCAGAATACGTTGGGTGTAGGCTGGACCAACGGCAACATTTATAGCTCTAGTATTCAAGAAGACAATGGGGAGGTTTTCTCGAATAGTGAAGAGGAATAGGAGAATTTTTAGAACTAATGGGCTGCCTTGGGAGTGTTTTGTCTTCAGGCTGGATTAATGCCTCTCTACTGTGATTCTGTGGACCTCTGTAATTATTAAGTAGCTATTAATTCTGTCCATTCAACCTTTTTTTTTCCTTTATGCTATAATAAATATTTTTATTTGAACTTGTGATCTAAATGAATATAGTTCAACTGATATTTAAATGTGTTAGTAAGCAAGAGGAATTTGGTTCGAATCTCCCAAACCCACGGTAGTCAAAATATTTTGGACTTGTCTTTTTATAAGCTTGCTTGTGTTTCCTTTTCGAGAATGAAAGTTTGATTTCTGATGGGTATTGAAGAATACTGATTTAGACAAGGCAGGTTGGCTCTGTTATTTATTTGCTGATTAAAGTGTGAAAAAGCCCTTTTATCTATCCATGTGCCATACCTGACTTTATAATTCCTGTGCTTCCTTTTGTCGATCCTTCTATCAACGAGTACAAGAGTTATATGGAGTTGCAATGTTGTTAACAAGAAATTGCGGCTTTTCCTTCATCTGAAGGCTTATACTTGCAGATATCACTTTTAACCTTTTTGTATGATGTTAGTAGAATACTCAATAAAGAAAGACTCATGTAGATATCATTTGTGTTATTACAGCAGGACAAGGGTCGTGCATTGCCAAAGTTCGGTGATTGGGATGTAAATAATCCTGCATCTGCAGAAGGATTTACAGTCATATTTAACAAGGCTAGAAATGAGAAGAAGACCACTGGAACTGCTGCCAATATGGTTCCTCAAGAAAGAAATGAACCTGTCTTCAACAATGAGAGTTACCCTCAGTATCCTCCACCCAAGGTCTGTTTAATAGAAGACTTGACAACCAATTAGATCTACATATATCTTAAATCTAATATAATTTTTGGTATTTGGATGCAGAAGAGGTGGTTTTGCTGTGGTTGAAGCCACAGTGGTTTCGGGATCTTGA

mRNA sequence

ATGGAGTGGAACAAGAAAGAGAGAGACAAAGAGAAGGAGACGGAGATGGTTGCAATTTGGGAAGAGCGGGAACCGACGGGCGAAGGAAAAGACAGAGAGACCGGAAGAAATAGGAGATTGGTGATCCCGAATACGTTGGGTGTAGGCTGGACCAACGGCAACATTTATAGCTCTAGTATTCAAGAAGACAATGGGGAGCAGGACAAGGGTCGTGCATTGCCAAAGTTCGGTGATTGGGATGTAAATAATCCTGCATCTGCAGAAGGATTTACAGTCATATTTAACAAGGCTAGAAATGAGAAGAAGACCACTGGAACTGCTGCCAATATGGTTCCTCAAGAAAGAAATGAACCTGTCTTCAACAATGAGAGTTACCCTCAAAGAGGTGGTTTTGCTGTGGTTGAAGCCACAGTGGTTTCGGGATCTTGA

Coding sequence (CDS)

ATGGAGTGGAACAAGAAAGAGAGAGACAAAGAGAAGGAGACGGAGATGGTTGCAATTTGGGAAGAGCGGGAACCGACGGGCGAAGGAAAAGACAGAGAGACCGGAAGAAATAGGAGATTGGTGATCCCGAATACGTTGGGTGTAGGCTGGACCAACGGCAACATTTATAGCTCTAGTATTCAAGAAGACAATGGGGAGCAGGACAAGGGTCGTGCATTGCCAAAGTTCGGTGATTGGGATGTAAATAATCCTGCATCTGCAGAAGGATTTACAGTCATATTTAACAAGGCTAGAAATGAGAAGAAGACCACTGGAACTGCTGCCAATATGGTTCCTCAAGAAAGAAATGAACCTGTCTTCAACAATGAGAGTTACCCTCAAAGAGGTGGTTTTGCTGTGGTTGAAGCCACAGTGGTTTCGGGATCTTGA

Protein sequence

MEWNKKERDKEKETEMVAIWEEREPTGEGKDRETGRNRRLVIPNTLGVGWTNGNIYSSSIQEDNGEQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYPQRGGFAVVEATVVSGS

Homology

[Close]

BLAST of CsGy1G009170 vs. NCBI nr
Match: XP_004152507.1 (PREDICTED: RPM1-interacting protein 4 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 7.3e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 67  QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYP 126
           QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYP
Sbjct: 4   QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYP 63

Query: 127 Q 128
           Q
Sbjct: 64  Q 64

[Close]

BLAST of CsGy1G009170 vs. NCBI nr
Match: KGN64368.1 (hypothetical protein Csa_1G050070 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 7.3e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 67  QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYP 126
           QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYP
Sbjct: 62  QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYP 121

Query: 127 Q 128
           Q
Sbjct: 122 Q 122

[Close]

BLAST of CsGy1G009170 vs. NCBI nr
Match: XP_008439256.1 (PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 2.0e-24
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 67  QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYP 126
           QD+GR LPKFG+WDVNNPASAEGFTVIFNKARNEKKTTG AANMVP+ERNEPVFNNESYP
Sbjct: 4   QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNESYP 63

Query: 127 Q 128
           Q
Sbjct: 64  Q 64

[Close]

BLAST of CsGy1G009170 vs. NCBI nr
Match: XP_008439265.1 (PREDICTED: RPM1-interacting protein 4 isoform X2 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 7.6e-24
Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 68  DKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYPQ 127
           D+GR LPKFG+WDVNNPASAEGFTVIFNKARNEKKTTG AANMVP+ERNEPVFNNESYPQ
Sbjct: 4   DRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNESYPQ 63

[Close]

BLAST of CsGy1G009170 vs. NCBI nr
Match: XP_022137179.1 (uncharacterized protein LOC111008714 isoform X1 [Momordica charantia])

HSP 1 Score: 110.2 bits (274), Expect = 6.0e-21
Identity = 60/113 (53.10%), Postives = 74/113 (65.49%), Query Frame = 0


Query: 47  GVGWTNGNIYSS-------------SIQEDNG-------------------EQDKGRALP 106
           GV  +NGNIYSS             ++QE++G                   EQD+GR LP
Sbjct: 12  GVEKSNGNIYSSPVCENSNSAVYCLTVQENHGKIFLNGRRIGELLEVMSSFEQDRGRPLP 71

Query: 107 KFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYPQ 128
           KFG+WDVNNPASAEGFTVIFNKAR+EKKTTGTAA+ V  +RNE ++NNE++PQ
Sbjct: 72  KFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQ 124

[Close]

BLAST of CsGy1G009170 vs. TAIR10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-13
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 67  QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTG 106
           +DKGR LPKFG+WDVN+PASAEGFTVIFNKAR+EKKT G
Sbjct: 18  RDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG 56

[Close]

BLAST of CsGy1G009170 vs. TAIR10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 71.2 bits (173), Expect = 5.6e-13
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 68  DKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFN 122
           DKGR LPKFG+WDVN+P+SAEGFTVIFNKARNEKK  G + +     ++EP +N
Sbjct: 3   DKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDS---PGKDEPGYN 53

[Close]

BLAST of CsGy1G009170 vs. TAIR10
Match: AT5G63270.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 68.9 bits (167), Expect = 2.8e-12
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 67  QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKT---TGTAAN-MVPQERNEPVFNN 126
           ++KG+ LPKFG+WDVNNPASAEGFTVIF+KA +EKKT   +G   N +V  +RN+    N
Sbjct: 3   ENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNSDQN 62

[Close]

BLAST of CsGy1G009170 vs. TAIR10
Match: AT3G48450.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-10
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 68  DKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTA 108
           ++ R LPKFG+WD  NP SAEGFTVIFNKAR++KKT  TA
Sbjct: 5   NRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKTMKTA 44

[Close]

BLAST of CsGy1G009170 vs. TAIR10
Match: AT5G40645.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-10
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 67  QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKT--TGTAAN 110
           Q + R LPKFG+WDVN+PASAEGFTVIF KAR++KKT  +G AA+
Sbjct: 9   QQQDRPLPKFGEWDVNDPASAEGFTVIFAKARDDKKTNASGRAAS 53

[Close]

BLAST of CsGy1G009170 vs. Swiss-Prot
Match: sp|O22633|NOI4_ARATH (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.5e-12
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 68  DKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTG 106
           DKGR LPKFG+WDVN+PASAEGFTVIFNKAR+EKKT G
Sbjct: 3   DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG 40

[Close]

BLAST of CsGy1G009170 vs. Swiss-Prot
Match: sp|Q8GYN5|RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.3e-06
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 68  DKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKT----TGTAANMVPQERNEPVFNNE 125
           +K   +PKFGDWD NNP+SA+G+T IFNK R E+ +    +G++     Q    P  NN 
Sbjct: 143 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTHQSSRNP--NNT 201

[Close]

BLAST of CsGy1G009170 vs. TrEMBL
Match: tr|A0A0A0LRE5|A0A0A0LRE5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050070 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.9e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 67  QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYP 126
           QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYP
Sbjct: 62  QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYP 121

Query: 127 Q 128
           Q
Sbjct: 122 Q 122

[Close]

BLAST of CsGy1G009170 vs. TrEMBL
Match: tr|A0A1S3AZ04|A0A1S3AZ04_CUCME (RPM1-interacting protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484092 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.3e-24
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 67  QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYP 126
           QD+GR LPKFG+WDVNNPASAEGFTVIFNKARNEKKTTG AANMVP+ERNEPVFNNESYP
Sbjct: 4   QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNESYP 63

Query: 127 Q 128
           Q
Sbjct: 64  Q 64

[Close]

BLAST of CsGy1G009170 vs. TrEMBL
Match: tr|A0A1S3AYE6|A0A1S3AYE6_CUCME (RPM1-interacting protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484092 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.0e-24
Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 68  DKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYPQ 127
           D+GR LPKFG+WDVNNPASAEGFTVIFNKARNEKKTTG AANMVP+ERNEPVFNNESYPQ
Sbjct: 4   DRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNESYPQ 63

[Close]

BLAST of CsGy1G009170 vs. TrEMBL
Match: tr|A0A072URP1|A0A072URP1_MEDTR (RPM1-interacting protein 4 (RIN4) family protein OS=Medicago truncatula OX=3880 GN=25493674 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.5e-15
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 66  EQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESY 125
           EQDKGR LPKFG+WDVNNPASAEGFTVIFNKAR+EKK T T+ NM      +PVF N+++
Sbjct: 17  EQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKK-TNTSINMATPRTADPVFKNDNH 76

Query: 126 PQ 128
           P+
Sbjct: 77  PK 77

[Close]

BLAST of CsGy1G009170 vs. TrEMBL
Match: tr|A0A2K3LIH0|A0A2K3LIH0_TRIPR (RPM1-interacting protein 4-like OS=Trifolium pratense OX=57577 GN=L195_g034319 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 9.5e-15
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 67  QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE-SY 126
           QDKGR LPKFG+WDVNNPASAEGFTVIFNKAR+EKK T T  N+ P+ RN+P++ NE  Y
Sbjct: 14  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKK-TNTYNNVTPR-RNDPIYQNEPQY 73

Query: 127 PQR 129
           P+R
Sbjct: 74  PRR 74

The following BLAST results are available for this feature:

BLAST of CsGy1G009170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152507.1	7.3e-27	100.00	PREDICTED: RPM1-interacting protein 4 [Cucumis sativus]	[more]
KGN64368.1	7.3e-27	100.00	hypothetical protein Csa_1G050070 [Cucumis sativus]	[more]
XP_008439256.1	2.0e-24	91.80	PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo]	[more]
XP_008439265.1	7.6e-24	91.67	PREDICTED: RPM1-interacting protein 4 isoform X2 [Cucumis melo]	[more]
XP_022137179.1	6.0e-21	53.10	uncharacterized protein LOC111008714 isoform X1 [Momordica charantia]	[more]

BLAST of CsGy1G009170 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G55850.2	1.5e-13	84.62	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT2G04410.1	5.6e-13	64.81	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G63270.1	2.8e-12	55.56	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT3G48450.1	1.2e-10	70.00	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G40645.1	1.5e-10	68.89	RPM1-interacting protein 4 (RIN4) family protein	[more]

BLAST of CsGy1G009170 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22633\|NOI4_ARATH	3.5e-12	86.84	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]
sp\|Q8GYN5\|RIN4_ARATH	8.3e-06	44.26	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]

BLAST of CsGy1G009170 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRE5\|A0A0A0LRE5_CUCSA	4.9e-27	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050070 PE=4 SV=1	[more]
tr\|A0A1S3AZ04\|A0A1S3AZ04_CUCME	1.3e-24	91.80	RPM1-interacting protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484092 PE...	[more]
tr\|A0A1S3AYE6\|A0A1S3AYE6_CUCME	5.0e-24	91.67	RPM1-interacting protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484092 PE...	[more]
tr\|A0A072URP1\|A0A072URP1_MEDTR	2.5e-15	69.35	RPM1-interacting protein 4 (RIN4) family protein OS=Medicago truncatula OX=3880 ...	[more]
tr\|A0A2K3LIH0\|A0A2K3LIH0_TRIPR	9.5e-15	71.43	RPM1-interacting protein 4-like OS=Trifolium pratense OX=57577 GN=L195_g034319 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G009170.1	CsGy1G009170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 68..103 e-value: 9.8E-23 score: 79.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..80
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 30..125

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G009170	Csa1G050070	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G009170	ClCG03G003430	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G009170	CSPI01G09140	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G009170	CmaCh18G002090	Cucurbita maxima (Rimu)	cgybcmaB085
CsGy1G009170	CmaCh18G007260	Cucurbita maxima (Rimu)	cgybcmaB102
CsGy1G009170	CmoCh18G001860	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G009170	Lsi02G004670	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G009170	Cp4.1LG09g09750	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G009170	CsaV3_1G009220	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G009170	Cla97C03G054510	Watermelon (97103) v2	cgybwmbB032
CsGy1G009170	Bhi07G001490	Wax gourd	cgybwgoB065
CsGy1G009170	Carg06770	Silver-seed gourd	carcgybB0500

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G009170	Wax gourd	cgybwgoB027
CsGy1G009170	Cucumber (Gy14) v2	cgybcgybB005
CsGy1G009170	Cucurbita maxima (Rimu)	cgybcmaB025
CsGy1G009170	Cucurbita maxima (Rimu)	cgybcmaB049
CsGy1G009170	Cucurbita maxima (Rimu)	cgybcmaB063
CsGy1G009170	Cucurbita moschata (Rifu)	cgybcmoB026
CsGy1G009170	Cucurbita moschata (Rifu)	cgybcmoB058
CsGy1G009170	Cucurbita pepo (Zucchini)	cgybcpeB080
CsGy1G009170	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G009170	Melon (DHL92) v3.5.1	cgybmeB046
CsGy1G009170	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G009170	Watermelon (Charleston Gray)	cgybwcgB069
CsGy1G009170	Watermelon (97103) v1	cgybwmB010
CsGy1G009170	Silver-seed gourd	carcgybB0620
CsGy1G009170	Silver-seed gourd	carcgybB0989
CsGy1G009170	Cucumber (Chinese Long) v3	cgybcucB018
CsGy1G009170	Watermelon (97103) v2	cgybwmbB055
CsGy1G009170	Watermelon (97103) v2	cgybwmbB070
CsGy1G009170	Watermelon (97103) v2	cgybwmbB084