Csa1G050070 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G050070
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	RPM1-interacting protein 4-like protein; contains IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)
Location	Chr1 : 5729950 .. 5731935 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGACGTGCAACCGTCGTTAACAATCTCAACTGTCGCTCTCGTAACAAACTATTGTGTGTTACTGTTGACAAATTTGTCCTTTTCCATCCTGTATTGCTCGCACTCTCTTTTTTCCCTTTCCGTTTTTGGTCTTCTCCTCTCCGATCCACGGCCCTTTCGTCCTGCAATCATGGCATCGGTAAAATTTCTACATCATTTCTCTGTTTTTATTTACTTGGAGAAGCTCAACTATCCGTGCTGTTTTATTTCCCTATTCAAAATGTGATTGTGGGAATTTGAATGATTAGAATGGATTGTTGTTTTGGGTATATGATCGTAGTCGTAGAATTTGGTTATCAACAAAGGTTGATATTGTTTAATTAACGATGACGGTATTAGCTGAGATGAAGAAGGGAATTTTGATTCCTAATTTGGAGTTAATAGTGCTTTAGAATGCAATAAATAATCGCCATGGTTATCTGTGGTTGGTTTTCTCCTCAGTGTTATTATGTTGTATGACGTGTTGGAGAACAAAATTGGTGTAGAGATTTCATCTTGTTCCATTTGTAATTCTAACAAGCTATGAGCAGGGAAGTGTAAGAATCCATGAATGAAAATATAGAATAATATTCATAGCTTGCCATGAAATGTTGTCGTATTACCAGAATACGTTGGGTGTAGGCTGGACCAACGGCAACATTTATAGCTCTAGTATTCAAGAAGACAATGGGGAGGTTTTCTCGAATAGTGAAGAGGAATAGGAGAATTTTTAGAACTAATGGGCTGCCTTGGGAGTGTTTTGTCTTCAGGCTGGATTAATGCCTCTCTACTGTGATTCTGTGGACCTCTGTAATTATTAAGTAGCTATTAATTCTGTCCATTCAACCTTTTTTTTCCTTTATGCTATAATAAATATTTTTATTTGAACTTGTGATCTAAATGAATATAGTTCAACTGATATTTAAATGTGTTAGTAAGCAAGAGGAATTTGGTTCGAATCTTCCAAACCCACGGTAGTCAAAATATTTTGGACTTGTCTTTTTATAAGCTTGCTTGTGTTTCCTTTTCGAGAATGAAAGTTTGATTTCTGATGGGTATTGAAGAATACTGATTTAGACAAGGCAGGTTGGCTCTGTTATTTATTTGCTGATTAAAGTGTGAAAAAGCCCTTTTATCTATCCATGTGCCATACCTGACTTTATAATTCCTGTGCTTCCTTTTGTCGATCCTTCTATCAACGAGTACAAGAGTTATATGGAGTTGCAATGTTGTTAACAAGAAATTGCGGCTTTTCCTTCATCTGAAGGCTTATACTTGCAGATATCACTTTTAACCTTTTTGTATGATGTTAGTAGAATACTCAATAAAGAAAGACTCATGTAGATATCATTTGTGTTATTACAGCAGGACAAGGGTCGTGCATTGCCAAAGTTCGGTGATTGGGATGTAAATAATCCTGCATCTGCAGAAGGATTTACAGTCATATTTAACAAGGCTAGAAATGAGAAGAAGACCACTGGAACTGCTGCCAATATGGTTCCTCAAGAAAGAAATGAACCTGTCTTCAACAATGAGAGTTACCCTCAGTATCCTCCACCCAAGGTCTGTTTAATAGAAGACTTGACAACCAATTAGATCTACATATATCTTAAATCTAATATAATTTTTGGTATTTGGATGCAGAAGAGGTGGTTTTGCTGTGGTTGAAGCCACAGTGGTTTCGGGATCTTGAATTTGTCTCATCTATTGTGAAAGACCGTAAAATTTTGAAGTCTCAACATATTGACTCATACCTTTCTTTCTTCCCTTTTCACTTTCATGCTATCATAATTTATAGCACATGGTACTCAGCTTATTTATCATGTAATACAGGATGGAAAAAGGCAAATTACATTGTCAAAATCTCGTTTCAATTTCATGGCATTCCTTTATCTCTATCATTCGTCAAAATGAATTGACCCTGTTAAAGTAAAATCGAATCGACCCTGTCCAAGTAAGGCTG

mRNA sequence

ATGAGCGACGTGCAACCGTCGTTAACAATCTCAACTGTCGCTCTCGTAACAAACTATTGTGTGTTACTGTTGACAAATTTGTCCTTTTCCATCCTGTATTGCTCGCACTCTCTTTTTTCCCTTTCCGTTTTTGGTCTTCTCCTCTCCGATCCACGGCCCTTTCGTCCTGCAATCATGGCATCGCAGGACAAGGGTCGTGCATTGCCAAAGTTCGGTGATTGGGATGTAAATAATCCTGCATCTGCAGAAGGATTTACAGTCATATTTAACAAGGCTAGAAATGAGAAGAAGACCACTGGAACTGCTGCCAATATGGTTCCTCAAGAAAGAAATGAACCTGTCTTCAACAATGAGAGTTACCCTCAGTATCCTCCACCCAAGAAGAGGTGGTTTTGCTGTGGTTGA

Coding sequence (CDS)

ATGAGCGACGTGCAACCGTCGTTAACAATCTCAACTGTCGCTCTCGTAACAAACTATTGTGTGTTACTGTTGACAAATTTGTCCTTTTCCATCCTGTATTGCTCGCACTCTCTTTTTTCCCTTTCCGTTTTTGGTCTTCTCCTCTCCGATCCACGGCCCTTTCGTCCTGCAATCATGGCATCGCAGGACAAGGGTCGTGCATTGCCAAAGTTCGGTGATTGGGATGTAAATAATCCTGCATCTGCAGAAGGATTTACAGTCATATTTAACAAGGCTAGAAATGAGAAGAAGACCACTGGAACTGCTGCCAATATGGTTCCTCAAGAAAGAAATGAACCTGTCTTCAACAATGAGAGTTACCCTCAGTATCCTCCACCCAAGAAGAGGTGGTTTTGCTGTGGTTGA

Protein sequence

MSDVQPSLTISTVALVTNYCVLLLTNLSFSILYCSHSLFSLSVFGLLLSDPRPFRPAIMASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYPQYPPPKKRWFCCG*

Homology

[Close]

BLAST of Csa1G050070 vs. Swiss-Prot
Match: RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-07
Identity = 31/75 (41.33%), Postives = 40/75 (53.33%), Query Frame = 1


Query: 49  SDPRPFRPAIMASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKT----TGTAAN 108
           S P+P       S +K   +PKFGDWD NNP+SA+G+T IFNK R E+ +    +G++  
Sbjct: 129 SRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRT 188

Query: 109 MVPQERNEPVFNNES 120
              Q    P  NN S
Sbjct: 189 PTHQSSRNP--NNTS 201

[Close]

BLAST of Csa1G050070 vs. TrEMBL
Match: A0A0A0LRE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050070 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.5e-72
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1


Query: 1   MSDVQPSLTISTVALVTNYCVLLLTNLSFSILYCSHSLFSLSVFGLLLSDPRPFRPAIMA 60
           MSDVQPSLTISTVALVTNYCVLLLTNLSFSILYCSHSLFSLSVFGLLLSDPRPFRPAIMA
Sbjct: 1   MSDVQPSLTISTVALVTNYCVLLLTNLSFSILYCSHSLFSLSVFGLLLSDPRPFRPAIMA 60

Query: 61  SQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESY 120
           SQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESY
Sbjct: 61  SQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESY 120

Query: 121 PQYPPPKKRWFCCG 135
           PQYPPPKKRWFCCG
Sbjct: 121 PQYPPPKKRWFCCG 134

[Close]

BLAST of Csa1G050070 vs. TrEMBL
Match: K7MLD9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G126900 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-20
Identity = 52/78 (66.67%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE 118
           M+SQ+ GR LPKFG+WDVNNPASAEGFTVIFNKAR+EKKT    A   P+ R++PVF NE
Sbjct: 1   MSSQENGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTNTATATPTPR-RSDPVFKNE 60

Query: 119 SY--PQYPPPKKRWFCCG 135
           +Y  PQY   K++WFCCG
Sbjct: 61  NYNNPQY-SGKRKWFCCG 76

[Close]

BLAST of Csa1G050070 vs. TrEMBL
Match: A0A0B2PY55_GLYSO (RPM1-interacting protein 4 OS=Glycine soja GN=glysoja_033302 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-20
Identity = 52/78 (66.67%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE 118
           M+SQ+ GR LPKFG+WDVNNPASAEGFTVIFNKAR+EKKT    A   P+ R++PVF NE
Sbjct: 1   MSSQENGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTNTATATPTPR-RSDPVFKNE 60

Query: 119 SY--PQYPPPKKRWFCCG 135
           +Y  PQY   K++WFCCG
Sbjct: 61  NYNNPQY-SGKRKWFCCG 76

[Close]

BLAST of Csa1G050070 vs. TrEMBL
Match: A0A0B2RRF0_GLYSO (RPM1-interacting protein 4 OS=Glycine soja GN=glysoja_016710 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.6e-20
Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 1


Query: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE 118
           MASQ+ GR LPKFG+WDVNNPASAEGFTVIFNKAR+EKKT     N     R++PVF NE
Sbjct: 1   MASQENGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKT-----NTATPRRSDPVFKNE 60

Query: 119 SY--PQYPPPKKRWFCCG 135
           +Y  PQY   K++WFCCG
Sbjct: 61  NYNTPQY-SGKRKWFCCG 72

[Close]

BLAST of Csa1G050070 vs. TrEMBL
Match: I1K074_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.6e-20
Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 1


Query: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE 118
           MASQ+ GR LPKFG+WDVNNPASAEGFTVIFNKAR+EKKT     N     R++PVF NE
Sbjct: 1   MASQENGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKT-----NTATPRRSDPVFKNE 60

Query: 119 SY--PQYPPPKKRWFCCG 135
           +Y  PQY   K++WFCCG
Sbjct: 61  NYNTPQY-SGKRKWFCCG 72

[Close]

BLAST of Csa1G050070 vs. TAIR10
Match: AT2G04410.1 (AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 84.3 bits (207), Expect = 6.1e-17
Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 1


Query: 63  DKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYPQ 122
           DKGR LPKFG+WDVN+P+SAEGFTVIFNKARNEKK  G + +     ++EP +N      
Sbjct: 3   DKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDS---PGKDEPGYNKNG-EV 62

Query: 123 YPPPKKRWFCC 134
              P K+WFCC
Sbjct: 63  LEKPAKKWFCC 69

[Close]

BLAST of Csa1G050070 vs. TAIR10
Match: AT5G63270.1 (AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 82.8 bits (203), Expect = 1.8e-16
Identity = 41/77 (53.25%), Postives = 49/77 (63.64%), Query Frame = 1


Query: 61  SQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKT---TGTAANMV--PQERNEPVF 120
           +++KG+ LPKFG+WDVNNPASAEGFTVIF+KA +EKKT   +G   N +  PQ       
Sbjct: 2   AENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNSDQ 61

Query: 121 NNESYPQYPPPKKRWFC 133
           NN    Q P  K +WFC
Sbjct: 62  NNNHSSQNPKAKNKWFC 78

[Close]

BLAST of Csa1G050070 vs. TAIR10
Match: AT3G48450.1 (AT3G48450.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 78.2 bits (191), Expect = 4.4e-15
Identity = 41/87 (47.13%), Postives = 50/87 (57.47%), Query Frame = 1


Query: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTA-----ANMVPQERNEP 118
           MA+ ++ R LPKFG+WD  NP SAEGFTVIFNKAR++KKT  TA     + + P    EP
Sbjct: 1   MATGNRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKTMKTAVAGPESIVSPPRNEEP 60

Query: 119 VFNNES--------YPQYPPPKKRWFC 133
             NN +        + Q P  KK+W C
Sbjct: 61  PKNNNNHHHNHHTRHSQTPRSKKKWLC 87

[Close]

BLAST of Csa1G050070 vs. TAIR10
Match: AT5G55850.2 (AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 75.1 bits (183), Expect = 3.7e-14
Identity = 40/69 (57.97%), Postives = 47/69 (68.12%), Query Frame = 1


Query: 62  QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNE-PVFNNESY 121
           +DKGR LPKFG+WDVN+PASAEGFTVIFNKAR+EKKT G   +  P + +E  V +    
Sbjct: 18  RDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS--PGKSSEGHVKSGGGD 77

Query: 122 PQYPPPKKR 130
           P  P P K+
Sbjct: 78  PSKPQPVKK 84

[Close]

BLAST of Csa1G050070 vs. TAIR10
Match: AT5G40645.1 (AT5G40645.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-13
Identity = 41/72 (56.94%), Postives = 48/72 (66.67%), Query Frame = 1


Query: 62  QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESYP 121
           Q + R LPKFG+WDVN+PASAEGFTVIF KAR++KKT   A+     +R +   NN+S  
Sbjct: 9   QQQDRPLPKFGEWDVNDPASAEGFTVIFAKARDDKKT--NASGRAASQRRD---NNKS-- 68

Query: 122 QYPPPKKRWFCC 134
           Q  P KKR FCC
Sbjct: 69  QDEPTKKR-FCC 72

[Close]

BLAST of Csa1G050070 vs. NCBI nr
Match: gi|700209272|gb|KGN64368.1| (hypothetical protein Csa_1G050070 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 2.1e-72
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1


Query: 1   MSDVQPSLTISTVALVTNYCVLLLTNLSFSILYCSHSLFSLSVFGLLLSDPRPFRPAIMA 60
           MSDVQPSLTISTVALVTNYCVLLLTNLSFSILYCSHSLFSLSVFGLLLSDPRPFRPAIMA
Sbjct: 1   MSDVQPSLTISTVALVTNYCVLLLTNLSFSILYCSHSLFSLSVFGLLLSDPRPFRPAIMA 60

Query: 61  SQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESY 120
           SQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESY
Sbjct: 61  SQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESY 120

Query: 121 PQYPPPKKRWFCCG 135
           PQYPPPKKRWFCCG
Sbjct: 121 PQYPPPKKRWFCCG 134

[Close]

BLAST of Csa1G050070 vs. NCBI nr
Match: gi|449469600|ref|XP_004152507.1| (PREDICTED: RPM1-interacting protein 4 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 9.1e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1


Query: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE 118
           MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE
Sbjct: 1   MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE 60

Query: 119 SYPQYPPPKKRWFCCG 135
           SYPQYPPPKKRWFCCG
Sbjct: 61  SYPQYPPPKKRWFCCG 76

[Close]

BLAST of Csa1G050070 vs. NCBI nr
Match: gi|659067399|ref|XP_008439256.1| (PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 2.5e-36
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1


Query: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE 118
           MASQD+GR LPKFG+WDVNNPASAEGFTVIFNKARNEKKTTG AANMVP+ERNEPVFNNE
Sbjct: 1   MASQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNE 60

Query: 119 SYPQYPPPKKRWFCCG 135
           SYPQYPPPKKRWFCCG
Sbjct: 61  SYPQYPPPKKRWFCCG 76

[Close]

BLAST of Csa1G050070 vs. NCBI nr
Match: gi|659067401|ref|XP_008439265.1| (PREDICTED: RPM1-interacting protein 4 isoform X2 [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 2.3e-34
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 1


Query: 61  SQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESY 120
           + D+GR LPKFG+WDVNNPASAEGFTVIFNKARNEKKTTG AANMVP+ERNEPVFNNESY
Sbjct: 2   ASDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNESY 61

Query: 121 PQYPPPKKRWFCCG 135
           PQYPPPKKRWFCCG
Sbjct: 62  PQYPPPKKRWFCCG 75

[Close]

BLAST of Csa1G050070 vs. NCBI nr
Match: gi|1009130552|ref|XP_015882361.1| (PREDICTED: RPM1-interacting protein 4 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 119.0 bits (297), Expect = 6.3e-24
Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = 1


Query: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE 118
           MA+QDKGR LPKFG+WDVNNPASAEGFTVIFNKAR+EKKT+  A  +V   RN+  + NE
Sbjct: 1   MATQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSAAAVKIVTPRRNDSAYKNE 60

Query: 119 SYPQYPPPKKRWFCCG 135
           +YP Y P K+RWFCCG
Sbjct: 61  TYPPY-PQKRRWFCCG 75

The following BLAST results are available for this feature:

BLAST of Csa1G050070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RIN4_ARATH	1.9e-07	41.33	RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1	[more]

BLAST of Csa1G050070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRE5_CUCSA	1.5e-72	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050070 PE=4 SV=1	[more]
K7MLD9_SOYBN	1.3e-20	66.67	Uncharacterized protein OS=Glycine max GN=GLYMA_17G126900 PE=4 SV=1	[more]
A0A0B2PY55_GLYSO	1.3e-20	66.67	RPM1-interacting protein 4 OS=Glycine soja GN=glysoja_033302 PE=4 SV=1	[more]
A0A0B2RRF0_GLYSO	6.6e-20	66.67	RPM1-interacting protein 4 OS=Glycine soja GN=glysoja_016710 PE=4 SV=1	[more]
I1K074_SOYBN	6.6e-20	66.67	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]

BLAST of Csa1G050070 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G04410.1	6.1e-17	57.75	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G63270.1	1.8e-16	53.25	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT3G48450.1	4.4e-15	47.13	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	3.7e-14	57.97	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G40645.1	3.1e-13	56.94	RPM1-interacting protein 4 (RIN4) family protein	[more]

BLAST of Csa1G050070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209272\|gb\|KGN64368.1\|	2.1e-72	100.00	hypothetical protein Csa_1G050070 [Cucumis sativus]	[more]
gi\|449469600\|ref\|XP_004152507.1\|	9.1e-39	100.00	PREDICTED: RPM1-interacting protein 4 [Cucumis sativus]	[more]
gi\|659067399\|ref\|XP_008439256.1\|	2.5e-36	93.42	PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo]	[more]
gi\|659067401\|ref\|XP_008439265.1\|	2.3e-34	90.54	PREDICTED: RPM1-interacting protein 4 isoform X2 [Cucumis melo]	[more]
gi\|1009130552\|ref\|XP_015882361.1\|	6.3e-24	69.74	PREDICTED: RPM1-interacting protein 4 isoform X1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU084938	cucumber EST collection version 3.0	transcribed_cluster
CU102458	cucumber EST collection version 3.0	transcribed_cluster
CU118106	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G050070.1	Csa1G050070.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU084938	CU084938	transcribed_cluster
CU118106	CU118106	transcribed_cluster
CU102458	CU102458	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 63..98 score: 6.3
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 59..134 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G050070	ClCG03G003430	Watermelon (Charleston Gray)	cuwcgB035
Csa1G050070	Lsi02G004670	Bottle gourd (USVL1VR-Ls)	culsiB022
Csa1G050070	Cla97C03G054510	Watermelon (97103) v2	cuwmbB032
Csa1G050070	CSPI01G09140	Wild cucumber (PI 183967)	cpicuB000
Csa1G050070	Cucsa.391700	Cucumber (Gy14) v1	cgycuB547
Csa1G050070	CmaCh18G002090	Cucurbita maxima (Rimu)	cmacuB390
Csa1G050070	CmoCh18G001860	Cucurbita moschata (Rifu)	cmocuB380
Csa1G050070	Cp4.1LG09g09750	Cucurbita pepo (Zucchini)	cpecuB029
Csa1G050070	CsGy1G009170	Cucumber (Gy14) v2	cgybcuB001
Csa1G050070	Carg06770	Silver-seed gourd	carcuB0523

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G050070	Cucurbita pepo (Zucchini)	cpecuB515
Csa1G050070	Bottle gourd (USVL1VR-Ls)	culsiB085
Csa1G050070	Melon (DHL92) v3.6.1	cumedB022
Csa1G050070	Silver-seed gourd	carcuB1017
Csa1G050070	Watermelon (97103) v2	cuwmbB087
Csa1G050070	Wax gourd	cuwgoB030
Csa1G050070	Cucumber (Chinese Long) v2	cucuB007
Csa1G050070	Cucurbita maxima (Rimu)	cmacuB204
Csa1G050070	Cucurbita moschata (Rifu)	cmocuB189
Csa1G050070	Melon (DHL92) v3.5.1	cumeB027
Csa1G050070	Watermelon (Charleston Gray)	cuwcgB089
Csa1G050070	Watermelon (97103) v1	cuwmB008