CSPI01G09140 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G09140
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRPM1-interacting protein 4
LocationChr1 : 5755921 .. 5757904 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGACGTGCAACCGTCGTTAACAATCTCAACTGTCGCTCTCGTAACAAACTATTGTGTGTTACTGTTGACAAATTTGTCCTTTTCCATCCTGTATTGCTCGCACTCTCTTTTTTCCCTTTCCGTTTTTGGTCTTCTCCTCTCCGATCCACGGCCCTTTCGTCCTGCAATCATGGCATCGGTAAAATTTCTACATCATTTCTCTGTTTTTATTTACTTGGAGAAGCTCAACTATCCGTGCTGTTTTATTTCCCTATTCAAAATGTGATTGTGGGAATTTGAATGATTAGAATGGATTGTTGTTTTGGGTATATGATCGTAGTCGTAGAATTTGGTTATCAACAAAGGTTGATATTGTTTAATTAACGATGACGGTATTAGCTGAGATGAAGAAGGGAATTTTGGTTCCTAATTTGGAGTTAATAGTGCTTTAGAATGCAATAAATAATCGCCATGGTTATCTGTGGTTGGTTTTCTCCTCAGTGTTATTATGTTGTATGACGTGTTGGAGAACAAAATTGGTGTAGAGATTTCATCTTGTTCCATTTGTAATTCTAACAAGCTATGAGCAGGGAAGTGTAAGAATCCATGAATGAAAATATAGAATAATATTCATAGCTTGCCATGAAATGTTGTCGTATTACCAGAATACGTTGGGTGTAGGCTGGACCAACGGCAACATTTATAGCTCTAGTATTCAAGAAGACAATGGGGAGGTTTTCTCGAATAGTGAAGAGGAATAGGAGAATTTTTAGAACTAATGGGCTGCCTTGGGAGTGTTTTGTCTTCAGGCTGGATTAATGCCTCTCTACTGTGATTCTGTGGACCTCTGTAATTATTAAGTAGCTATTAATTCTGTCCATTAACCTTTTTTTCCTTTATCCTATAATAAATATTTTTATTTGAACTTGTGATGTAAATGAATATAGTTCAACTGATATTTAAATGTGTTAGTAAGCAAGAGGAATTTGGTTCGAATCTCCCAAACCCACGGTAGTCAAAATATTTTGGACTTGTCTTTTTATAAACTTGCTTGTGTTTCCTTTTCGAGAATGAAAGTTTGATTTCTGATGGGTATTGAAGAATACTGATTTAGACAAGGGAGATTGGCTCTGTTATTTATTTGCTGATTAAAGTGTGAAAAAGCCCTTTTATCTATCCATGTGCCATACCTGACTTTATAATTCCTGTGCTTCCTTTTGTCGATCCTTCTATCAACGAGTACAAGAGTTATATGGAGTTGCAATGTTGTTAACAAGAAATTGCGGCTTTTCCTTCATCTGAAGGCTTATACTTGCAGATATCACTTTTAACCTTTTTGTATGATGTTAGTAGAATACTCAATAAAGAAAGACTCATGTAGATATCATTTGTGTTATTACAGCAGGACAAGGGTCGTGCATTGCCAAAGTTCGGTGATTGGGATGTAAATAATCCTGCATCTGCAGAAGGATTTACAGTCATATTTAACAAGGCTAGAAATGAGAAGAAGACCACTGGAACTGCTGCCAATATGGTTCCTCAAGAAAGAAATGAACCTGTCTTCAACAATGAGAGTTACCCTCAGTATCCTCCACCCAAGGTCTGTTTAATAGAAGACTTGACAACCAATTAGATCTACATATATCTTAAATCTAATATAATTTTTGGTATTTGGATGCAGAAGAGGTGGTTTTGCTGTGGTTGAAGCCACAGTGGTTTCGGGATCTTGAATTTGTCTCATCTATTGTGAAAGACCGTAAAATTTTGAAGTCTCAACATATTGACTCATACCTTCCTTTCTTCCCTTTTCACTTTCATGCTATCATAATTTATAGCACATGGTACTCAGCTTATTTATCATGTAATACAGGATGGAAAAAGGCAAATTACATTGTCAAAATCTCGTTTCAATTTCATGGCATTCCTTTATCTCTATCATTCGTCAAAATGAATTGACCCTGTTAAAGTAAAATCGAATCGACCCTGTCCAAGTAAGGCTG

mRNA sequence

ATGAGCGACGTGCAACCGTCGTTAACAATCTCAACTGTCGCTCTCGTAACAAACTATTGTGTGTTACTGTTGACAAATTTGTCCTTTTCCATCCTGTATTGCTCGCACTCTCTTTTTTCCCTTTCCGTTTTTGGTCTTCTCCTCTCCGATCCACGGCCCTTTCGTCCTGCAATCATGGCATCGCAGGACAAGGGTCGTGCATTGCCAAAGTTCGGTGATTGGGATGTAAATAATCCTGCATCTGCAGAAGGATTTACAGTCATATTTAACAAGGCTAGAAATGAGAAGAAGACCACTGGAACTGCTGCCAATATGGTTCCTCAAGAAAGAAATGAACCTGTCTTCAACAATGAGAGTTACCCTCAAAGAGGTGGTTTTGCTGTGGTTGAAGCCACAGTGGTTTCGGGATCTTGA

Coding sequence (CDS)

ATGAGCGACGTGCAACCGTCGTTAACAATCTCAACTGTCGCTCTCGTAACAAACTATTGTGTGTTACTGTTGACAAATTTGTCCTTTTCCATCCTGTATTGCTCGCACTCTCTTTTTTCCCTTTCCGTTTTTGGTCTTCTCCTCTCCGATCCACGGCCCTTTCGTCCTGCAATCATGGCATCGCAGGACAAGGGTCGTGCATTGCCAAAGTTCGGTGATTGGGATGTAAATAATCCTGCATCTGCAGAAGGATTTACAGTCATATTTAACAAGGCTAGAAATGAGAAGAAGACCACTGGAACTGCTGCCAATATGGTTCCTCAAGAAAGAAATGAACCTGTCTTCAACAATGAGAGTTACCCTCAAAGAGGTGGTTTTGCTGTGGTTGAAGCCACAGTGGTTTCGGGATCTTGA
Homology
[Close]
BLAST of CSPI01G09140 vs. Swiss-Prot
Match: RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-07
Identity = 31/75 (41.33%), Postives = 42/75 (56.00%), Query Frame = 1 

Query: 49  SDPRPFRPAIMASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKT----TGTAAN 108
           S P+P       S +K   +PKFGDWD NNP+SA+G+T IFNK R E+ +    +G++  
Sbjct: 129 SRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRT 188

Query: 109 MVPQERNEPVFNNES 120
              Q    P  NN S
Sbjct: 189 PTHQSSRNP--NNTS 201

[Close]
BLAST of CSPI01G09140 vs. TrEMBL
Match: A0A0A0LRE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050070 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 6.0e-61
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1 

Query: 1   MSDVQPSLTISTVALVTNYCVLLLTNLSFSILYCSHSLFSLSVFGLLLSDPRPFRPAIMA 60
           MSDVQPSLTISTVALVTNYCVLLLTNLSFSILYCSHSLFSLSVFGLLLSDPRPFRPAIMA
Sbjct: 1   MSDVQPSLTISTVALVTNYCVLLLTNLSFSILYCSHSLFSLSVFGLLLSDPRPFRPAIMA 60

Query: 61  SQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESY 120
           SQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESY
Sbjct: 61  SQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESY 120

Query: 121 PQ 123
           PQ
Sbjct: 121 PQ 122

[Close]
BLAST of CSPI01G09140 vs. TrEMBL
Match: K7MLD9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G126900 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.5e-16
Identity = 46/69 (66.67%), Postives = 54/69 (78.26%), Query Frame = 1 

Query: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE 118
           M+SQ+ GR LPKFG+WDVNNPASAEGFTVIFNKAR+EKKT    A   P+ R++PVF NE
Sbjct: 1   MSSQENGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTNTATATPTPR-RSDPVFKNE 60

Query: 119 SY--PQRGG 126
           +Y  PQ  G
Sbjct: 61  NYNNPQYSG 68

[Close]
BLAST of CSPI01G09140 vs. TrEMBL
Match: A0A0B2PY55_GLYSO (RPM1-interacting protein 4 OS=Glycine soja GN=glysoja_033302 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.5e-16
Identity = 46/69 (66.67%), Postives = 54/69 (78.26%), Query Frame = 1 

Query: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE 118
           M+SQ+ GR LPKFG+WDVNNPASAEGFTVIFNKAR+EKKT    A   P+ R++PVF NE
Sbjct: 1   MSSQENGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTNTATATPTPR-RSDPVFKNE 60

Query: 119 SY--PQRGG 126
           +Y  PQ  G
Sbjct: 61  NYNNPQYSG 68

[Close]
BLAST of CSPI01G09140 vs. TrEMBL
Match: A0A0B2RRF0_GLYSO (RPM1-interacting protein 4 OS=Glycine soja GN=glysoja_016710 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.2e-15
Identity = 46/69 (66.67%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE 118
           MASQ+ GR LPKFG+WDVNNPASAEGFTVIFNKAR+EKKT     N     R++PVF NE
Sbjct: 1   MASQENGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKT-----NTATPRRSDPVFKNE 60

Query: 119 SY--PQRGG 126
           +Y  PQ  G
Sbjct: 61  NYNTPQYSG 64

[Close]
BLAST of CSPI01G09140 vs. TrEMBL
Match: I1K074_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.2e-15
Identity = 46/69 (66.67%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE 118
           MASQ+ GR LPKFG+WDVNNPASAEGFTVIFNKAR+EKKT     N     R++PVF NE
Sbjct: 1   MASQENGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKT-----NTATPRRSDPVFKNE 60

Query: 119 SY--PQRGG 126
           +Y  PQ  G
Sbjct: 61  NYNTPQYSG 64

[Close]
BLAST of CSPI01G09140 vs. TAIR10
Match: AT5G55850.2 (AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 73.9 bits (180), Expect = 8.4e-14
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1 

Query: 62  QDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTG 101
           +DKGR LPKFG+WDVN+PASAEGFTVIFNKAR+EKKT G
Sbjct: 18  RDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG 56

[Close]
BLAST of CSPI01G09140 vs. TAIR10
Match: AT2G04410.1 (AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 71.6 bits (174), Expect = 4.2e-13
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 1 

Query: 63  DKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFN 117
           DKGR LPKFG+WDVN+P+SAEGFTVIFNKARNEKK  G + +     ++EP +N
Sbjct: 3   DKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDS---PGKDEPGYN 53

[Close]
BLAST of CSPI01G09140 vs. TAIR10
Match: AT3G48450.1 (AT3G48450.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 70.5 bits (171), Expect = 9.3e-13
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 1 

Query: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTA-----ANMVPQERNEP 118
           MA+ ++ R LPKFG+WD  NP SAEGFTVIFNKAR++KKT  TA     + + P    EP
Sbjct: 1   MATGNRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKTMKTAVAGPESIVSPPRNEEP 60

Query: 119 VFNNESY 121
             NN ++
Sbjct: 61  PKNNNNH 67

[Close]
BLAST of CSPI01G09140 vs. TAIR10
Match: AT5G63270.1 (AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-12
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 1 

Query: 61  SQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKT---TGTAAN-MVPQERNEPVFN 120
           +++KG+ LPKFG+WDVNNPASAEGFTVIF+KA +EKKT   +G   N +V  +RN+    
Sbjct: 2   AENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNSDQ 61

[Close]
BLAST of CSPI01G09140 vs. TAIR10
Match: AT2G17660.1 (AT2G17660.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-11
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 1 

Query: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNE 113
           MAS + GRALPKFG+WDVN+PA+A+GFTVIF+KA  +KKT  ++     Q + +
Sbjct: 1   MASNEAGRALPKFGEWDVNDPATADGFTVIFSKAGEDKKTGRSSTKTNSQRKQD 54

[Close]
BLAST of CSPI01G09140 vs. NCBI nr
Match: gi|700209272|gb|KGN64368.1| (hypothetical protein Csa_1G050070 [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 8.7e-61
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1 

Query: 1   MSDVQPSLTISTVALVTNYCVLLLTNLSFSILYCSHSLFSLSVFGLLLSDPRPFRPAIMA 60
           MSDVQPSLTISTVALVTNYCVLLLTNLSFSILYCSHSLFSLSVFGLLLSDPRPFRPAIMA
Sbjct: 1   MSDVQPSLTISTVALVTNYCVLLLTNLSFSILYCSHSLFSLSVFGLLLSDPRPFRPAIMA 60

Query: 61  SQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESY 120
           SQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESY
Sbjct: 61  SQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESY 120

Query: 121 PQ 123
           PQ
Sbjct: 121 PQ 122

[Close]
BLAST of CSPI01G09140 vs. NCBI nr
Match: gi|449469600|ref|XP_004152507.1| (PREDICTED: RPM1-interacting protein 4 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 6.7e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 

Query: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE 118
           MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE
Sbjct: 1   MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE 60

Query: 119 SYPQ 123
           SYPQ
Sbjct: 61  SYPQ 64

[Close]
BLAST of CSPI01G09140 vs. NCBI nr
Match: gi|659067399|ref|XP_008439256.1| (PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 1.8e-26
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 1 

Query: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE 118
           MASQD+GR LPKFG+WDVNNPASAEGFTVIFNKARNEKKTTG AANMVP+ERNEPVFNNE
Sbjct: 1   MASQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNE 60

Query: 119 SYPQ 123
           SYPQ
Sbjct: 61  SYPQ 64

[Close]
BLAST of CSPI01G09140 vs. NCBI nr
Match: gi|659067401|ref|XP_008439265.1| (PREDICTED: RPM1-interacting protein 4 isoform X2 [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-24
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 1 

Query: 61  SQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNESY 120
           + D+GR LPKFG+WDVNNPASAEGFTVIFNKARNEKKTTG AANMVP+ERNEPVFNNESY
Sbjct: 2   ASDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNESY 61

Query: 121 PQ 123
           PQ
Sbjct: 62  PQ 63

[Close]
BLAST of CSPI01G09140 vs. NCBI nr
Match: gi|1009130552|ref|XP_015882361.1| (PREDICTED: RPM1-interacting protein 4 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 1 

Query: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE 118
           MA+QDKGR LPKFG+WDVNNPASAEGFTVIFNKAR+EKKT+  A  +V   RN+  + NE
Sbjct: 1   MATQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSAAAVKIVTPRRNDSAYKNE 60

Query: 119 SYP 122
           +YP
Sbjct: 61  TYP 63

The following BLAST results are available for this feature:
BLAST of CSPI01G09140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RIN4_ARATH1.9e-0741.33RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1[more]
BLAST of CSPI01G09140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRE5_CUCSA6.0e-61100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050070 PE=4 SV=1[more]
K7MLD9_SOYBN4.5e-1666.67Uncharacterized protein OS=Glycine max GN=GLYMA_17G126900 PE=4 SV=1[more]
A0A0B2PY55_GLYSO4.5e-1666.67RPM1-interacting protein 4 OS=Glycine soja GN=glysoja_033302 PE=4 SV=1[more]
A0A0B2RRF0_GLYSO2.2e-1566.67RPM1-interacting protein 4 OS=Glycine soja GN=glysoja_016710 PE=4 SV=1[more]
I1K074_SOYBN2.2e-1566.67Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
BLAST of CSPI01G09140 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G55850.28.4e-1484.62 RPM1-interacting protein 4 (RIN4) family protein[more]
AT2G04410.14.2e-1364.81 RPM1-interacting protein 4 (RIN4) family protein[more]
AT3G48450.19.3e-1352.24 RPM1-interacting protein 4 (RIN4) family protein[more]
AT5G63270.11.2e-1254.69 RPM1-interacting protein 4 (RIN4) family protein[more]
AT2G17660.11.0e-1155.56 RPM1-interacting protein 4 (RIN4) family protein[more]
BLAST of CSPI01G09140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209272|gb|KGN64368.1|8.7e-61100.00hypothetical protein Csa_1G050070 [Cucumis sativus][more]
gi|449469600|ref|XP_004152507.1|6.7e-29100.00PREDICTED: RPM1-interacting protein 4 [Cucumis sativus][more]
gi|659067399|ref|XP_008439256.1|1.8e-2692.19PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo][more]
gi|659067401|ref|XP_008439265.1|1.7e-2488.71PREDICTED: RPM1-interacting protein 4 isoform X2 [Cucumis melo][more]
gi|1009130552|ref|XP_015882361.1|1.2e-1769.84PREDICTED: RPM1-interacting protein 4 isoform X1 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008700TypeIII_avirulence_cleave
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G09140.1CSPI01G09140.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008700RIN4, pathogenic type III effector avirulence factor Avr cleavage sitePFAMPF05627AvrRpt-cleavagecoord: 63..98
score: 6.5
NoneNo IPR availablePANTHERPTHR33159FAMILY NOT NAMEDcoord: 59..111
score: 3.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G09140Csa1G050070Cucumber (Chinese Long) v2cpicuB000
CSPI01G09140ClCG03G003430Watermelon (Charleston Gray)cpiwcgB038
CSPI01G09140Lsi02G004670Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G09140CsaV3_1G009220Cucumber (Chinese Long) v3cpicucB001
CSPI01G09140Cla97C03G054510Watermelon (97103) v2cpiwmbB032
CSPI01G09140Bhi07G001490Wax gourdcpiwgoB069
CSPI01G09140Cucsa.391700Cucumber (Gy14) v1cgycpiB576
CSPI01G09140CmaCh18G002090Cucurbita maxima (Rimu)cmacpiB394
CSPI01G09140CmoCh18G001860Cucurbita moschata (Rifu)cmocpiB383
CSPI01G09140Cp4.1LG09g09750Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G09140CsGy1G009170Cucumber (Gy14) v2cgybcpiB001
CSPI01G09140Carg06770Silver-seed gourdcarcpiB0531
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G09140Cucurbita moschata (Rifu)cmocpiB056
CSPI01G09140Cucurbita moschata (Rifu)cmocpiB098
CSPI01G09140Cucurbita moschata (Rifu)cmocpiB193
CSPI01G09140Cucumber (Chinese Long) v2cpicuB017
CSPI01G09140Melon (DHL92) v3.5.1cpimeB024
CSPI01G09140Melon (DHL92) v3.5.1cpimeB064
CSPI01G09140Watermelon (Charleston Gray)cpiwcgB075
CSPI01G09140Watermelon (Charleston Gray)cpiwcgB094
CSPI01G09140Watermelon (97103) v1cpiwmB010
CSPI01G09140Cucurbita pepo (Zucchini)cpecpiB517
CSPI01G09140Bottle gourd (USVL1VR-Ls)cpilsiB083
CSPI01G09140Melon (DHL92) v3.6.1cpimedB023
CSPI01G09140Cucumber (Gy14) v2cgybcpiB052
CSPI01G09140Silver-seed gourdcarcpiB0654
CSPI01G09140Silver-seed gourdcarcpiB1041
CSPI01G09140Cucumber (Chinese Long) v3cpicucB022
CSPI01G09140Watermelon (97103) v2cpiwmbB072
CSPI01G09140Watermelon (97103) v2cpiwmbB088
CSPI01G09140Wax gourdcpiwgoB030
CSPI01G09140Wild cucumber (PI 183967)cpicpiB008
CSPI01G09140Cucurbita maxima (Rimu)cmacpiB063
CSPI01G09140Cucurbita maxima (Rimu)cmacpiB103
CSPI01G09140Cucurbita maxima (Rimu)cmacpiB161
CSPI01G09140Cucurbita maxima (Rimu)cmacpiB206
CSPI01G09140Cucurbita maxima (Rimu)cmacpiB410