Carg06770 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06770
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Rpm1-interacting protein 4
Location	Cucurbita_argyrosperma_scaffold_012 : 908272 .. 910748 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGTTTTTGAGATCACTTGGGGAAGTTGAAACGACGTGAATCCCACGTTATCTTGCGTGTCGTTTCGATTTCAATTCTCTTTTGGGGGGCGTTTGATTCGCTGGGTTGGAGGTTTGATAAGAAATCACTGACGATTTGTTTTCTTTTCGTTTTTGTTTTCCTCGTATCCGATCCACCGCCCTGCGTCCTGCGATCATGGCACCGGTAAGTTTTATACTTCATTTTCATGCATCTTTGATTTTTAATTAGAAGAATTTAACTTTTCGTTCTGTTTCCCCAAAGAAATTGCGATTGTGTTCATCGGGATGATCTAAAGGGATTGATTAAACACACACCAATCGGTGATTAGGCTACATGGATGTAATCGTAGGATTTGGTTATTGAAATAAGGTATTGATTAGTCAATGGTGGCTGAGATGAAGGAGGGAGATGTGATTCCTTTGACGCTAACAATGCTCTAGAATGAAATAACAAATCGCCATGGTTTGTTTTCTCCTTCGTTTTATTACAATTGACGTGTTGGAGAACATTTGATGTAGAAATTCAATCTTGTTTGTATGTTTTAACAAGATTCGAGCAGGGAAGTGTAAGAATTTATGCATGAAAATATGAACATTTAGTTAGGTTGATTAGATTTTCAGTCATGGTAGCCTTATTAGGGATTTGCTAGATTGGATATATAGGAACTCATGTCCATGGCACCATTCCTGCACTGAAATATTTGCGTATTCCAACATTTTAGAACATAGAATAGGTTGGGCTTAGACAAATCCGGTGGAAAATTTAGAGCTCCACTGTTCAAGAAAACCAGAATAGGAGAATGCTTAGAAGGGGTGAACAGCATTGGAAGGTCTCAGTCTTTTGCTAGGTTAAATGGTTCTCTATGATCTGTTTATAAGGAGTTTTATAATTATTGTATGGTCCTTAATCTTGTTCATTGAAACTTCTTGTAATCCAAAAGGAAACCCATCTAGGAAACACAATCAACATTCCCAGTTCATGGAAAATTGAAAATACTGATCTAGATAATGGAGAATTGTCCATATTGCTTATTTTCAGGCTAAAAAGTGAAAAAAAATATATCATTTCATCCTTCAATGCGCCATATCTGTCTTAAATTCTGTTGGAAGCAGCCTGCGCTTCCTTTTGCCAGTCCTTCCATCTGTAGAAGAGTTGTAGGCTATAAGTAATTGTGGGCTGTTTGTTATCTGAAGTCATTTACCAGCAGAGATCATTGAACATTTTTTCAAGATGTTAATAGTAGCATGCTTAATAAAGTCTCATGGAGATTCATTGCATAATTGCAGCAGGACAAGGGTTGTCCACTGCCGAAGTTCGGGGAATGGGATGAAAATAAGATCATTAAACATTTTTCAAAGCTTTTAGTAGTAGCATGCTTACTAAAGTCTCATGTAGATATCATTGCATAATTGCAGAAGGACAAGGGTCGTCCACTGCCGAAGTTCGGGGAATGGGATGTAAATAAGATCCTTAAAACATTTTTCAAAGATTTTAATAGTAGCATGCTTACTAAAGTCTCATGTAGATATCATTGCATAACTGCAGCAGGACAAGGGTCGTCCACTGCCGAAATTCGGGGAATGGGATGTAGTAAATAAGATCATTAAACATTTTTCAAAGCTTTTAGTAGTAGCATGCTTAGTAAAGTCTCATGTAGATATCATTGCATAACTGCAGCAGGACAAGGGTCGTCCACTGCCGAAATTCGGGGAATGGGATGTAGTAAATAAGATCATTAAACATTTTTCAAAGCTTTTAGTAGTAGCATGCTTAGTAAAGTCTCATGTAGATATCATTGCATAACTGCAGCAGGACAAGGGTCGTCCACTGCCGAAGTTCGGGGAATGGGATGTAAATAATCCTGCATCTGCTGAGGGATTTACGGTCATATTTAACAAGGCTAGAGATGAGAAGAAGACTACTGGAAGTGTTGCCAATATGGTTTCTTCACAAAGTAATGAGCCTGCCTACAACAATGAAAGTTTCCCTCAGTCTCCTCCACCAAAGGTCTGTTTATTAGAAGACTTTGGAATCAATTTGTTCTAGATATCTTGAATCTAATCTGTTCTTTGGTATTTGAATTGCAGAAGAGGTGGTTTTGCTGTGGTTGATGCCACCACAGTGGTTTCAGGGTCTTGACTTATGTAATCCATTGTGAAAGCCCGTAAGATTTGAGGGCCCTATCCAACGGTGGATCACTGGATCACAACATAGTTGTTGCGCCAAAAAATGACTCATATTATTCCTTTTTCCTTTTCACTTTGGCTTTCACGCTTCATTGACGTTATATAATAATGTTTATCACATGTTATTCTGTATTTGCATTGTAATACAGAATGGAAAGGATAAATTCCATTGTCGAGATCTTTTTTCAATTTCATGATGATGATCTTTATGTGGACCTATGGTGGAAGGATTCTGATGGGAACTTTCTATAAATTAGCTGCTTTGTTTT

mRNA sequence

AATGTTTTTGAGATCACTTGGGGAAGTTGAAACGACGTGAATCCCACGTTATCTTGCGTGTCGTTTCGATTTCAATTCTCTTTTGGGGGGCGTTTGATTCGCTGGGTTGGAGGTTTGATAAGAAATCACTGACGATTTGTTTTCTTTTCGTTTTTGTTTTCCTCGTATCCGATCCACCGCCCTGCGTCCTGCGATCATGGCACCGCAGGACAAGGGTCGTCCACTGCCGAAGTTCGGGGAATGGGATGTAAATAATCCTGCATCTGCTGAGGGATTTACGGTCATATTTAACAAGGCTAGAGATGAGAAGAAGACTACTGGAAGTGTTGCCAATATGGTTTCTTCACAAAGTAATGAGCCTGCCTACAACAATGAAAGTTTCCCTCAGTCTCCTCCACCAAAGAAGAGGTGGTTTTGCTGTGGTTGATGCCACCACAGTGGTTTCAGGGTCTTGACTTATGTAATCCATTGTGAAAGCCCGTAAGATTTGAGGGCCCTATCCAACGGTGGATCACTGGATCACAACATAGTTGTTGCGCCAAAAAATGACTCATATTATTCCTTTTTCCTTTTCACTTTGGCTTTCACGCTTCATTGACGTTATATAATAATGTTTATCACATGTTATTCTGTATTTGCATTGTAATACAGAATGGAAAGGATAAATTCCATTGTCGAGATCTTTTTTCAATTTCATGATGATGATCTTTATGTGGACCTATGGTGGAAGGATTCTGATGGGAACTTTCTATAAATTAGCTGCTTTGTTTT

Coding sequence (CDS)

ATGGCACCGCAGGACAAGGGTCGTCCACTGCCGAAGTTCGGGGAATGGGATGTAAATAATCCTGCATCTGCTGAGGGATTTACGGTCATATTTAACAAGGCTAGAGATGAGAAGAAGACTACTGGAAGTGTTGCCAATATGGTTTCTTCACAAAGTAATGAGCCTGCCTACAACAATGAAAGTTTCCCTCAGTCTCCTCCACCAAAGAAGAGGTGGTTTTGCTGTGGTTGA

Protein sequence

MAPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNESFPQSPPPKKRWFCCG

Homology

[Close]

BLAST of Carg06770 vs. NCBI nr
Match: XP_022954832.1 (RPM1-interacting protein 4-like [Cucurbita moschata] >XP_023542808.1 RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.5 bits (415), Expect = 1.4e-37
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNE 60
          MAPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNE
Sbjct: 1  MAPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNE 60

Query: 61 SFPQSPPPKKRWFCCG 77
          SFPQSPPPKKRWFCCG
Sbjct: 61 SFPQSPPPKKRWFCCG 76

[Close]

BLAST of Carg06770 vs. NCBI nr
Match: XP_022994173.1 (RPM1-interacting protein 4-like [Cucurbita maxima])

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-36
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MAPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNE 60
          MAPQDKG PLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNE
Sbjct: 1  MAPQDKGCPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNE 60

Query: 61 SFPQSPPPKKRWFCCG 77
          SFPQSPPPKKRWFCCG
Sbjct: 61 SFPQSPPPKKRWFCCG 76

[Close]

BLAST of Carg06770 vs. NCBI nr
Match: XP_008439256.1 (PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 5.9e-31
Identity = 63/76 (82.89%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 1  MAPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNE 60
          MA QD+GRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKTTG+ ANMV  + NEP +NNE
Sbjct: 1  MASQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNE 60

Query: 61 SFPQSPPPKKRWFCCG 77
          S+PQ PPPKKRWFCCG
Sbjct: 61 SYPQYPPPKKRWFCCG 76

[Close]

BLAST of Carg06770 vs. NCBI nr
Match: XP_004152507.1 (PREDICTED: RPM1-interacting protein 4 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 5.0e-30
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 1  MAPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNE 60
          MA QDKGR LPKFG+WDVNNPASAEGFTVIFNKAR+EKKTTG+ ANMV  + NEP +NNE
Sbjct: 1  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE 60

Query: 61 SFPQSPPPKKRWFCCG 77
          S+PQ PPPKKRWFCCG
Sbjct: 61 SYPQYPPPKKRWFCCG 76

[Close]

BLAST of Carg06770 vs. NCBI nr
Match: KGN64368.1 (hypothetical protein Csa_1G050070 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 5.0e-30
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 1   MAPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNE 60
           MA QDKGR LPKFG+WDVNNPASAEGFTVIFNKAR+EKKTTG+ ANMV  + NEP +NNE
Sbjct: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE 118

Query: 61  SFPQSPPPKKRWFCCG 77
           S+PQ PPPKKRWFCCG
Sbjct: 119 SYPQYPPPKKRWFCCG 134

[Close]

BLAST of Carg06770 vs. TAIR10
Match: AT5G63270.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 87.4 bits (215), Expect = 4.1e-18
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 4  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKT---TGSVAN-MVSSQSNEPA-YN 63
          ++KG+PLPKFGEWDVNNPASAEGFTVIF+KA DEKKT   +G+  N +VS Q N+ +  N
Sbjct: 3  ENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNSDQN 62

Query: 64 NESFPQSPPPKKRWFC 75
          N    Q+P  K +WFC
Sbjct: 63 NNHSSQNPKAKNKWFC 78

[Close]

BLAST of Carg06770 vs. TAIR10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 87.0 bits (214), Expect = 5.3e-18
Identity = 45/71 (63.38%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 5  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNESFPQ 64
          DKGRPLPKFGEWDVN+P+SAEGFTVIFNKAR+EKK  G      S   +EP YN      
Sbjct: 3  DKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGG---KSDSPGKDEPGYNKNGEVL 62

Query: 65 SPPPKKRWFCC 76
            P KK WFCC
Sbjct: 63 EKPAKK-WFCC 69

[Close]

BLAST of Carg06770 vs. TAIR10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-15
Identity = 42/68 (61.76%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 4  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNESFP 63
          +DKGRPLPKFGEWDVN+PASAEGFTVIFNKARDEKKT G   +   S S     +    P
Sbjct: 18 RDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKS-SEGHVKSGGGDP 77

Query: 64 QSPPPKKR 72
            P P K+
Sbjct: 78 SKPQPVKK 84

[Close]

BLAST of Carg06770 vs. TAIR10
Match: AT5G40645.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 77.4 bits (189), Expect = 4.2e-15
Identity = 45/72 (62.50%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 4  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNESFP 63
          Q + RPLPKFGEWDVN+PASAEGFTVIF KARD+KKT  S     +SQ  +   NN+S  
Sbjct: 9  QQQDRPLPKFGEWDVNDPASAEGFTVIFAKARDDKKTNAS--GRAASQRRD---NNKS-- 68

Query: 64 QSPPPKKRWFCC 76
          Q  P KKR FCC
Sbjct: 69 QDEPTKKR-FCC 72

[Close]

BLAST of Carg06770 vs. TAIR10
Match: AT3G48450.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 70.5 bits (171), Expect = 5.1e-13
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1  MAPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKT 41
          MA  ++ RPLPKFGEWD  NP SAEGFTVIFNKARD+KKT
Sbjct: 1  MATGNRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKT 40

[Close]

BLAST of Carg06770 vs. Swiss-Prot
Match: sp|O22633|NOI4_ARATH (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.3e-17
Identity = 44/71 (61.97%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 5  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNESFPQ 64
          DKGRPLPKFGEWDVN+PASAEGFTVIFNKARDEKKT G   +    +S+E    +     
Sbjct: 3  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS--PGKSSEGHVKSGGGDP 62

Query: 65 SPPPKKRWFCC 76
          S P  K+W CC
Sbjct: 63 SKPQPKKWLCC 71

[Close]

BLAST of Carg06770 vs. Swiss-Prot
Match: sp|Q8GYN5|RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.6e-06
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 5   DKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNESFPQ 64
           +K   +PKFG+WD NNP+SA+G+T IFNK R+E+    S AN VS  S  P + +   P 
Sbjct: 143 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREER---SSGAN-VSGSSRTPTHQSSRNPN 199

Query: 65  S 66
           +
Sbjct: 203 N 199

[Close]

BLAST of Carg06770 vs. TrEMBL
Match: tr|A0A1S3AZ04|A0A1S3AZ04_CUCME (RPM1-interacting protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484092 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.9e-31
Identity = 63/76 (82.89%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 1  MAPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNE 60
          MA QD+GRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKTTG+ ANMV  + NEP +NNE
Sbjct: 1  MASQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNE 60

Query: 61 SFPQSPPPKKRWFCCG 77
          S+PQ PPPKKRWFCCG
Sbjct: 61 SYPQYPPPKKRWFCCG 76

[Close]

BLAST of Carg06770 vs. TrEMBL
Match: tr|A0A0A0LRE5|A0A0A0LRE5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050070 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.3e-30
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 1   MAPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNE 60
           MA QDKGR LPKFG+WDVNNPASAEGFTVIFNKAR+EKKTTG+ ANMV  + NEP +NNE
Sbjct: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVPQERNEPVFNNE 118

Query: 61  SFPQSPPPKKRWFCCG 77
           S+PQ PPPKKRWFCCG
Sbjct: 119 SYPQYPPPKKRWFCCG 134

[Close]

BLAST of Carg06770 vs. TrEMBL
Match: tr|A0A1S3AYE6|A0A1S3AYE6_CUCME (RPM1-interacting protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484092 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 60/72 (83.33%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 5  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNESFPQ 64
          D+GRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKTTG+ ANMV  + NEP +NNES+PQ
Sbjct: 4  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNESYPQ 63

Query: 65 SPPPKKRWFCCG 77
           PPPKKRWFCCG
Sbjct: 64 YPPPKKRWFCCG 75

[Close]

BLAST of Carg06770 vs. TrEMBL
Match: tr|A0A251PCL0|A0A251PCL0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G158200 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.6e-23
Identity = 58/85 (68.24%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 1  MAPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMV-------SSQSN 60
          MA QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKT+ +   MV       S + N
Sbjct: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSAAQVKMVTPRKTDGSLRRN 60

Query: 61 EPAYN--NESFPQSPPPKKRWFCCG 77
             YN  NE +P+ PP KKRWFCCG
Sbjct: 61 GTGYNTVNEHYPKYPPSKKRWFCCG 85

[Close]

BLAST of Carg06770 vs. TrEMBL
Match: tr|A0A2P4ND06|A0A2P4ND06_QUESU (Rpm1-interacting protein 4 OS=Quercus suber OX=58331 GN=CFP56_69926 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.6e-21
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 5  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNESFPQ 64
          DK +PLPKFGEWDVNNPASAEGFTVIFN ARDEKKT+    N+V+ + + P Y N+S+PQ
Sbjct: 5  DKVQPLPKFGEWDVNNPASAEGFTVIFNNARDEKKTSAGTENLVTPRRSNPVYKNDSYPQ 64

Query: 65 SPPPKKRWFCCG 77
            P KK+WFCCG
Sbjct: 65 Y-PQKKKWFCCG 75

The following BLAST results are available for this feature:

BLAST of Carg06770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954832.1	1.4e-37	100.00	RPM1-interacting protein 4-like [Cucurbita moschata] >XP_023542808.1 RPM1-intera...	[more]
XP_022994173.1	1.2e-36	98.68	RPM1-interacting protein 4-like [Cucurbita maxima]	[more]
XP_008439256.1	5.9e-31	82.89	PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo]	[more]
XP_004152507.1	5.0e-30	81.58	PREDICTED: RPM1-interacting protein 4 [Cucumis sativus]	[more]
KGN64368.1	5.0e-30	81.58	hypothetical protein Csa_1G050070 [Cucumis sativus]	[more]

BLAST of Carg06770 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63270.1	4.1e-18	60.53	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT2G04410.1	5.3e-18	63.38	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	1.1e-15	61.76	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G40645.1	4.2e-15	62.50	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT3G48450.1	5.1e-13	77.50	RPM1-interacting protein 4 (RIN4) family protein	[more]

BLAST of Carg06770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22633\|NOI4_ARATH	4.3e-17	61.97	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]
sp\|Q8GYN5\|RIN4_ARATH	2.6e-06	45.90	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]

BLAST of Carg06770 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AZ04\|A0A1S3AZ04_CUCME	3.9e-31	82.89	RPM1-interacting protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484092 PE...	[more]
tr\|A0A0A0LRE5\|A0A0A0LRE5_CUCSA	3.3e-30	81.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050070 PE=4 SV=1	[more]
tr\|A0A1S3AYE6\|A0A1S3AYE6_CUCME	1.2e-29	83.33	RPM1-interacting protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484092 PE...	[more]
tr\|A0A251PCL0\|A0A251PCL0_PRUPE	6.6e-23	68.24	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G158200 PE=4 SV=1	[more]
tr\|A0A2P4ND06\|A0A2P4ND06_QUESU	3.6e-21	68.06	Rpm1-interacting protein 4 OS=Quercus suber OX=58331 GN=CFP56_69926 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06770-RA	Carg06770-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 5..40 e-value: 3.4E-23 score: 80.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..76
None	No IPR available	PANTHER	PTHR33159:SF2	RPM1-INTERACTING PROTEIN 4 RIN4 FAMILY PROTEIN	coord: 4..75
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 4..75

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06770	Csa1G050070	Cucumber (Chinese Long) v2	carcuB0523
Carg06770	ClCG03G003430	Watermelon (Charleston Gray)	carwcgB0480
Carg06770	CSPI01G09140	Wild cucumber (PI 183967)	carcpiB0531
Carg06770	Cucsa.391700	Cucumber (Gy14) v1	carcgyB0571
Carg06770	CmaCh18G002090	Cucurbita maxima (Rimu)	carcmaB0692
Carg06770	CmoCh18G001860	Cucurbita moschata (Rifu)	carcmoB0673
Carg06770	Lsi02G004670	Bottle gourd (USVL1VR-Ls)	carlsiB447
Carg06770	Cp4.1LG09g09750	Cucurbita pepo (Zucchini)	carcpeB0694
Carg06770	CsGy1G009170	Cucumber (Gy14) v2	carcgybB0500
Carg06770	CsaV3_1G009220	Cucumber (Chinese Long) v3	carcucB0529
Carg06770	Cla97C03G054510	Watermelon (97103) v2	carwmbB0517

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06770	Wax gourd	carwgoB0601
Carg06770	Silver-seed gourd	carcarB481
Carg06770	Silver-seed gourd	carcarB484
Carg06770	Cucurbita maxima (Rimu)	carcmaB0686
Carg06770	Cucurbita maxima (Rimu)	carcmaB0688
Carg06770	Cucurbita maxima (Rimu)	carcmaB0689
Carg06770	Cucurbita moschata (Rifu)	carcmoB0669
Carg06770	Cucurbita moschata (Rifu)	carcmoB0670
Carg06770	Cucurbita pepo (Zucchini)	carcpeB0695
Carg06770	Cucurbita pepo (Zucchini)	carcpeB0698
Carg06770	Cucurbita pepo (Zucchini)	carcpeB0699
Carg06770	Melon (DHL92) v3.5.1	carmeB0499
Carg06770	Melon (DHL92) v3.6.1	carmedB0504
Carg06770	Watermelon (97103) v1	carwmB0489