Lsi01G017790 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G017790
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Sigma factor binding protein 1
Location	chr01 : 17030559 .. 17031056 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCCGGCGCCGGCACCGGAAACAACCACAGAATCCTCGATGCCGTTCACCGGTGTAAACCCACAAAGAAAACGAAGCAACCCAACAAAAAGAAACCCATCAAAGTTGTGTACATATCTAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCCGACCCCTCTAAATTCCCCTCCTCCGCCGTCTTCGGCGGCGCCGCCTCCTCCGACCTCCTCCACAACACCGCATCCGGCCGCGACGACGACGACGACGACGGTGCTAGTAATCTTATGATGAATAGTAACAACCCTTCACTTGCTGTTGAGCTGCCGGAGGAGGACGACTTTCTTGGTAGTTTTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTAATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCGACGACGGCGGTTGTCTATGAATCTTATGCAAGGTGA

mRNA sequence

ATGGACGCCGGCGCCGGCACCGGAAACAACCACAGAATCCTCGATGCCGTTCACCGGTGTAAACCCACAAAGAAAACGAAGCAACCCAACAAAAAGAAACCCATCAAAGTTGTGTACATATCTAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCCGACCCCTCTAAATTCCCCTCCTCCGCCGTCTTCGGCGGCGCCGCCTCCTCCGACCTCCTCCACAACACCGCATCCGGCCGCGACGACGACGACGACGACGGTGCTAGTAATCTTATGATGAATAGTAACAACCCTTCACTTGCTGTTGAGCTGCCGGAGGAGGACGACTTTCTTGGTAGTTTTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTAATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCGACGACGGCGGTTGTCTATGAATCTTATGCAAGGTGA

Coding sequence (CDS)

ATGGACGCCGGCGCCGGCACCGGAAACAACCACAGAATCCTCGATGCCGTTCACCGGTGTAAACCCACAAAGAAAACGAAGCAACCCAACAAAAAGAAACCCATCAAAGTTGTGTACATATCTAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCCGACCCCTCTAAATTCCCCTCCTCCGCCGTCTTCGGCGGCGCCGCCTCCTCCGACCTCCTCCACAACACCGCATCCGGCCGCGACGACGACGACGACGACGGTGCTAGTAATCTTATGATGAATAGTAACAACCCTTCACTTGCTGTTGAGCTGCCGGAGGAGGACGACTTTCTTGGTAGTTTTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTAATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCGACGACGGCGGTTGTCTATGAATCTTATGCAAGGTGA

Protein sequence

MDAGAGTGNNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR

Homology

[Close]

BLAST of Lsi01G017790 vs. Swiss-Prot
Match: SIB1_ARATH (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.6e-08
Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = 1


Query: 17  VHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFP 76
           V R  P +K K  +  KPIKV YISNPM+VQT AS+F  LVQELTGQDA D  P+P   P
Sbjct: 22  VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSP 81

Query: 77  SSAVFGGAASSD-----LLHNTASGRDDDD 100
           SS     +  ++     +LH    G  D D
Sbjct: 82  SSDDHNLSPPAENLAPRVLHQEPFGERDSD 111

[Close]

BLAST of Lsi01G017790 vs. Swiss-Prot
Match: SIB2_ARATH (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=SIB2 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-07
Identity = 34/70 (48.57%), Postives = 41/70 (58.57%), Query Frame = 1


Query: 9  NNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFP 68
          N  +   +  R  P +K K     KPIKV YISNPM+V+T  S+F  LVQELTGQDA   
Sbjct: 11 NQRKSSSSPTRIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADL 70

Query: 69 DPSKFPSSAV 79
           PS    +AV
Sbjct: 71 PPSPTTFTAV 80

[Close]

BLAST of Lsi01G017790 vs. TrEMBL
Match: A0A0A0L3J8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.4e-56
Identity = 125/167 (74.85%), Postives = 137/167 (82.04%), Query Frame = 1


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAG  TG++HR LDAV+R KPTKKTKQP    KKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV  GAAS+D L+NT S     +DDGA+NL++NSNN SL  E
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTIS--SGGEDDGATNLIVNSNNSSLVDE 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFP PVIGNFSGLLP A   AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLP-APVAAVVYESNAR 164

[Close]

BLAST of Lsi01G017790 vs. TrEMBL
Match: W9R567_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013937 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.1e-16
Identity = 67/160 (41.88%), Postives = 94/160 (58.75%), Query Frame = 1


Query: 9   NNHRILDAVHRCKPTKKTKQPNKK---KPIKVVYISNPMKVQTSASEFMALVQELTGQDA 68
           +N  +L ++ R KPTKKT   NK    +P+KVVYISNPMK++TSASEF ALVQELTGQDA
Sbjct: 3   SNSNVLTSLQR-KPTKKTSANNKTKKTRPVKVVYISNPMKIKTSASEFRALVQELTGQDA 62

Query: 69  DFPDPSKFPSSAVFGGAASSDLLHNTASGRD--DDDDDGASNLMMNSNNPSLAVELPEED 128
           +FPDP+KF ++    G     +      G D  +  + GA+     SNN S         
Sbjct: 63  EFPDPTKFLAT---NGEDQVGVDSTVKIGGDHSNSQEQGAT----ESNNSSTTTT----- 122

Query: 129 DFLGSFYNDFEDLIFPPPVIGNF-SGLLPAAATTAVVYES 163
               S Y   +D +F P ++ +F +G+ P++AT +V Y+S
Sbjct: 123 ----SRYEALDDDVFMPQMMESFEAGIFPSSATASVWYDS 145

[Close]

BLAST of Lsi01G017790 vs. TrEMBL
Match: A0A068ULZ1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028988001 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 59/140 (42.14%), Postives = 82/140 (58.57%), Query Frame = 1


Query: 14  LDAVHRCKPTKKTKQP-NKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSK 73
           +D +      K  KQP NKKKP+KVVYISNPMKV+TSASEF ALVQELTGQDAD PDP+K
Sbjct: 1   MDKMLSVNQKKTNKQPKNKKKPVKVVYISNPMKVKTSASEFRALVQELTGQDADMPDPTK 60

Query: 74  FPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVELPEEDD--FLGSFY 133
           +  +   GG+   ++   +   +  +DD      ++   N     E+PE  D    G+  
Sbjct: 61  YSDTDSVGGSCQEEV---STELKTMEDDQVVQQPLVQPKN-----EMPERADCNIYGTCD 120

Query: 134 NDFEDLIFPPPVIGNFSGLL 151
            + +DL++ P    +F GL+
Sbjct: 121 REDDDLLYMPE---SFPGLV 129

[Close]

BLAST of Lsi01G017790 vs. TrEMBL
Match: A0A0A0LFH5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G820480 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 52/118 (44.07%), Postives = 71/118 (60.17%), Query Frame = 1


Query: 21  KPTKKTKQ-PNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVF 80
           K T+K K     K+P+KVVYISNPM+V TSASEF ALVQELTG+DA+FPDP+KF      
Sbjct: 19  KTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYP---- 78

Query: 81  GGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLI 138
             A+S ++++      DDD +          +   L ++   +DDFL S Y   ED++
Sbjct: 79  --ASSCEIMN------DDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESLEDIL 124

[Close]

BLAST of Lsi01G017790 vs. TrEMBL
Match: I1JN53_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G127800 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-12
Identity = 71/167 (42.51%), Postives = 89/167 (53.29%), Query Frame = 1


Query: 16  AVHRCKPTKKTKQPNKKK---PIKVVYISNPMKVQTSASEFMALVQELTGQDADF-PDPS 75
           +V +  PTKKTK P KK    P+KVVYISNPMK++TSASEF ALVQELTGQDA+  PDP+
Sbjct: 11  SVQQRTPTKKTK-PKKKNTPHPVKVVYISNPMKIKTSASEFRALVQELTGQDAESPPDPT 70

Query: 76  KFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNL---------MMNSNNPSLAVELPEE 135
           +F             L+H  +S   D  ++   N+          +   N SLA    EE
Sbjct: 71  RF-----------HGLIHPDSSSSVDHIEEEEDNVHSVNCVVPPAVADENMSLAGCYEEE 130

Query: 136 DDFLGS---FYNDFEDL----IFPPPVIGNFSGLLPAAATTAVVYES 163
                S     N+FE L    +F P +I N S LLPA    +V YES
Sbjct: 131 QQQQPSSMESINNFEPLDDDDVFTPQMIENISALLPA----SVFYES 161

[Close]

BLAST of Lsi01G017790 vs. TAIR10
Match: AT3G56710.1 (AT3G56710.1 sigma factor binding protein 1)

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-09
Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = 1


Query: 17  VHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFP 76
           V R  P +K K  +  KPIKV YISNPM+VQT AS+F  LVQELTGQDA D  P+P   P
Sbjct: 22  VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSP 81

Query: 77  SSAVFGGAASSD-----LLHNTASGRDDDD 100
           SS     +  ++     +LH    G  D D
Sbjct: 82  SSDDHNLSPPAENLAPRVLHQEPFGERDSD 111

[Close]

BLAST of Lsi01G017790 vs. TAIR10
Match: AT2G41180.1 (AT2G41180.1 VQ motif-containing protein)

HSP 1 Score: 57.4 bits (137), Expect = 9.8e-09
Identity = 34/70 (48.57%), Postives = 41/70 (58.57%), Query Frame = 1


Query: 9  NNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFP 68
          N  +   +  R  P +K K     KPIKV YISNPM+V+T  S+F  LVQELTGQDA   
Sbjct: 11 NQRKSSSSPTRIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADL 70

Query: 69 DPSKFPSSAV 79
           PS    +AV
Sbjct: 71 PPSPTTFTAV 80

[Close]

BLAST of Lsi01G017790 vs. NCBI nr
Match: gi|659111355|ref|XP_008455708.1| (PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis melo])

HSP 1 Score: 233.0 bits (593), Expect = 3.7e-58
Identity = 128/167 (76.65%), Postives = 138/167 (82.63%), Query Frame = 1


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNKK--KPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGA TGNN R LDAV+R KP KKTKQ NKK  KPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV   AAS+D L+NT SG    DDDGASNL++NSNNPSL  +
Sbjct: 80  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSG--GGDDDGASNLIVNSNNPSLVDD 139

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Sbjct: 140 VPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP-GPMAAVVYESNAR 183

[Close]

BLAST of Lsi01G017790 vs. NCBI nr
Match: gi|778694743|ref|XP_011653858.1| (PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 2.0e-56
Identity = 125/167 (74.85%), Postives = 137/167 (82.04%), Query Frame = 1


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAG  TG++HR LDAV+R KPTKKTKQP    KKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV  GAAS+D L+NT S     +DDGA+NL++NSNN SL  E
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTIS--SGGEDDGATNLIVNSNNSSLVDE 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFP PVIGNFSGLLP A   AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLP-APVAAVVYESNAR 164

[Close]

BLAST of Lsi01G017790 vs. NCBI nr
Match: gi|703074146|ref|XP_010089743.1| (hypothetical protein L484_013937 [Morus notabilis])

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-15
Identity = 67/160 (41.88%), Postives = 94/160 (58.75%), Query Frame = 1


Query: 9   NNHRILDAVHRCKPTKKTKQPNKK---KPIKVVYISNPMKVQTSASEFMALVQELTGQDA 68
           +N  +L ++ R KPTKKT   NK    +P+KVVYISNPMK++TSASEF ALVQELTGQDA
Sbjct: 3   SNSNVLTSLQR-KPTKKTSANNKTKKTRPVKVVYISNPMKIKTSASEFRALVQELTGQDA 62

Query: 69  DFPDPSKFPSSAVFGGAASSDLLHNTASGRD--DDDDDGASNLMMNSNNPSLAVELPEED 128
           +FPDP+KF ++    G     +      G D  +  + GA+     SNN S         
Sbjct: 63  EFPDPTKFLAT---NGEDQVGVDSTVKIGGDHSNSQEQGAT----ESNNSSTTTT----- 122

Query: 129 DFLGSFYNDFEDLIFPPPVIGNF-SGLLPAAATTAVVYES 163
               S Y   +D +F P ++ +F +G+ P++AT +V Y+S
Sbjct: 123 ----SRYEALDDDVFMPQMMESFEAGIFPSSATASVWYDS 145

[Close]

BLAST of Lsi01G017790 vs. NCBI nr
Match: gi|661886847|emb|CDP09565.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 59/140 (42.14%), Postives = 82/140 (58.57%), Query Frame = 1


Query: 14  LDAVHRCKPTKKTKQP-NKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSK 73
           +D +      K  KQP NKKKP+KVVYISNPMKV+TSASEF ALVQELTGQDAD PDP+K
Sbjct: 1   MDKMLSVNQKKTNKQPKNKKKPVKVVYISNPMKVKTSASEFRALVQELTGQDADMPDPTK 60

Query: 74  FPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVELPEEDD--FLGSFY 133
           +  +   GG+   ++   +   +  +DD      ++   N     E+PE  D    G+  
Sbjct: 61  YSDTDSVGGSCQEEV---STELKTMEDDQVVQQPLVQPKN-----EMPERADCNIYGTCD 120

Query: 134 NDFEDLIFPPPVIGNFSGLL 151
            + +DL++ P    +F GL+
Sbjct: 121 REDDDLLYMPE---SFPGLV 129

[Close]

BLAST of Lsi01G017790 vs. NCBI nr
Match: gi|778685199|ref|XP_011652185.1| (PREDICTED: uncharacterized protein LOC105434994 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 52/118 (44.07%), Postives = 71/118 (60.17%), Query Frame = 1


Query: 21  KPTKKTKQ-PNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVF 80
           K T+K K     K+P+KVVYISNPM+V TSASEF ALVQELTG+DA+FPDP+KF      
Sbjct: 19  KTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYP---- 78

Query: 81  GGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLI 138
             A+S ++++      DDD +          +   L ++   +DDFL S Y   ED++
Sbjct: 79  --ASSCEIMN------DDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESLEDIL 124

The following BLAST results are available for this feature:

BLAST of Lsi01G017790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SIB1_ARATH	4.6e-08	47.78	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE...	[more]
SIB2_ARATH	1.7e-07	48.57	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=SIB2 PE...	[more]

BLAST of Lsi01G017790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3J8_CUCSA	1.4e-56	74.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G431960 PE=4 SV=1	[more]
W9R567_9ROSA	7.1e-16	41.88	Uncharacterized protein OS=Morus notabilis GN=L484_013937 PE=4 SV=1	[more]
A0A068ULZ1_COFCA	1.3e-14	42.14	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028988001 PE=4 SV=1	[more]
A0A0A0LFH5_CUCSA	1.2e-12	44.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G820480 PE=4 SV=1	[more]
I1JN53_SOYBN	1.6e-12	42.51	Uncharacterized protein OS=Glycine max GN=GLYMA_03G127800 PE=4 SV=1	[more]

BLAST of Lsi01G017790 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G56710.1	2.6e-09	47.78	sigma factor binding protein 1	[more]
AT2G41180.1	9.8e-09	48.57	VQ motif-containing protein	[more]

BLAST of Lsi01G017790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111355\|ref\|XP_008455708.1\|	3.7e-58	76.65	PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis melo]	[more]
gi\|778694743\|ref\|XP_011653858.1\|	2.0e-56	74.85	PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis sativus]	[more]
gi\|703074146\|ref\|XP_010089743.1\|	1.0e-15	41.88	hypothetical protein L484_013937 [Morus notabilis]	[more]
gi\|661886847\|emb\|CDP09565.1\|	1.9e-14	42.14	unnamed protein product [Coffea canephora]	[more]
gi\|778685199\|ref\|XP_011652185.1\|	1.8e-12	44.07	PREDICTED: uncharacterized protein LOC105434994 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0051091	positive regulation of sequence-specific DNA binding transcription factor activity
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G017790.1	Lsi01G017790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 40..65 score: 3.6
None	No IPR available	PANTHER	PTHR33624	FAMILY NOT NAMED	coord: 21..165 score: 1.3
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC-RELATED	coord: 21..165 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G017790	Csa4G431960	Cucumber (Chinese Long) v2	culsiB249
Lsi01G017790	Csa3G820480	Cucumber (Chinese Long) v2	culsiB167
Lsi01G017790	CSPI04G19260	Wild cucumber (PI 183967)	cpilsiB248
Lsi01G017790	CSPI03G37800	Wild cucumber (PI 183967)	cpilsiB166
Lsi01G017790	Cucsa.337760	Cucumber (Gy14) v1	cgylsiB546
Lsi01G017790	Cucsa.068360	Cucumber (Gy14) v1	cgylsiB067
Lsi01G017790	CmaCh03G001350	Cucurbita maxima (Rimu)	cmalsiB601
Lsi01G017790	CmaCh07G010850	Cucurbita maxima (Rimu)	cmalsiB791
Lsi01G017790	CmoCh03G001590	Cucurbita moschata (Rifu)	cmolsiB584
Lsi01G017790	CmoCh07G011340	Cucurbita moschata (Rifu)	cmolsiB779
Lsi01G017790	Cla002876	Watermelon (97103) v1	lsiwmB130
Lsi01G017790	MELO3C019076	Melon (DHL92) v3.5.1	lsimeB158
Lsi01G017790	MELO3C009755	Melon (DHL92) v3.5.1	lsimeB144
Lsi01G017790	ClCG10G016220	Watermelon (Charleston Gray)	lsiwcgB121
Lsi01G017790	ClCG04G004500	Watermelon (Charleston Gray)	lsiwcgB143
Lsi01G017790	MELO3C009755.2	Melon (DHL92) v3.6.1	lsimedB149
Lsi01G017790	MELO3C019076.2	Melon (DHL92) v3.6.1	lsimedB165
Lsi01G017790	Cla97C04G071190	Watermelon (97103) v2	lsiwmbB142
Lsi01G017790	Cla97C10G199120	Watermelon (97103) v2	lsiwmbB119
Lsi01G017790	Bhi03G002023	Wax gourd	lsiwgoB182
Lsi01G017790	Cp4.1LG19g02610	Cucurbita pepo (Zucchini)	cpelsiB391
Lsi01G017790	Cp4.1LG10g11090	Cucurbita pepo (Zucchini)	cpelsiB056
Lsi01G017790	CsGy4G018180	Cucumber (Gy14) v2	cgyblsiB237
Lsi01G017790	Carg13305	Silver-seed gourd	carlsiB527
Lsi01G017790	CsaV3_3G040160	Cucumber (Chinese Long) v3	cuclsiB182
Lsi01G017790	CsaV3_4G029660	Cucumber (Chinese Long) v3	cuclsiB273

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Lsi01G017790	Lsi03G016120	Bottle gourd (USVL1VR-Ls)	lsilsiB073

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G017790	Cucurbita maxima (Rimu)	cmalsiB229
Lsi01G017790	Cucurbita moschata (Rifu)	cmolsiB217
Lsi01G017790	Cucurbita pepo (Zucchini)	cpelsiB048
Lsi01G017790	Cucurbita pepo (Zucchini)	cpelsiB489
Lsi01G017790	Cucumber (Gy14) v2	cgyblsiB152
Lsi01G017790	Silver-seed gourd	carlsiB224