Cp4.1LG19g02610 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG19g02610
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	sigma factor binding protein 1
Location	Cp4.1LG19 : 2160888 .. 2161388 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGCGGCGGCGGCGGCGGCAACCGCAACGACCACACATCTCTCGGCGGCGTCCGCCGACGAAAGCCGACGAAGAAAACAAACCAACCCAACAACAAAAAGAAACCCATCAAAGTTGTGTACATATCGAATCCAATGAAGGTTAAAACCAGTGCCTCTAAATTCATGGCTTTGGTCCAAGAGCTCACCGGCCAAGATGCCGACTTTCCCGACCCCTCTAAGTTCCACTCCTCCGACGTAGACGCCGGAGCCACCCCCGACCTCCTCCACAGCACGGCCGCCGCCGCCGCCCAGGACTATGATAGTCTAACGATGAATAATAATATCCCTACTACACTTGGTGTTGAGCTGCCGGCCGAGGACTACCTTCTTGGTAGCTTTTATGATGACTTTGACGACCTGATTCTTCCTCCTCCACTCATCGGAAACTTCTCCGAATTTCTACCAGCGGCTGAGGCGGCGGCGGCGGCGGTGATGTATGAATCTTATGCAATGTGA

mRNA sequence

ATGGACGGCGGCGGCGGCGGCGGCAACCGCAACGACCACACATCTCTCGGCGGCGTCCGCCGACGAAAGCCGACGAAGAAAACAAACCAACCCAACAACAAAAAGAAACCCATCAAAGTTGTGTACATATCGAATCCAATGAAGGTTAAAACCAGTGCCTCTAAATTCATGGCTTTGGTCCAAGAGCTCACCGGCCAAGATGCCGACTTTCCCGACCCCTCTAAGTTCCACTCCTCCGACGTAGACGCCGGAGCCACCCCCGACCTCCTCCACAGCACGGCCGCCGCCGCCGCCCAGGACTATGATAGTCTAACGATGAATAATAATATCCCTACTACACTTGGTGTTGAGCTGCCGGCCGAGGACTACCTTCTTGGTAGCTTTTATGATGACTTTGACGACCTGATTCTTCCTCCTCCACTCATCGGAAACTTCTCCGAATTTCTACCAGCGGCTGAGGCGGCGGCGGCGGCGGTGATGTATGAATCTTATGCAATGTGA

Coding sequence (CDS)

ATGGACGGCGGCGGCGGCGGCGGCAACCGCAACGACCACACATCTCTCGGCGGCGTCCGCCGACGAAAGCCGACGAAGAAAACAAACCAACCCAACAACAAAAAGAAACCCATCAAAGTTGTGTACATATCGAATCCAATGAAGGTTAAAACCAGTGCCTCTAAATTCATGGCTTTGGTCCAAGAGCTCACCGGCCAAGATGCCGACTTTCCCGACCCCTCTAAGTTCCACTCCTCCGACGTAGACGCCGGAGCCACCCCCGACCTCCTCCACAGCACGGCCGCCGCCGCCGCCCAGGACTATGATAGTCTAACGATGAATAATAATATCCCTACTACACTTGGTGTTGAGCTGCCGGCCGAGGACTACCTTCTTGGTAGCTTTTATGATGACTTTGACGACCTGATTCTTCCTCCTCCACTCATCGGAAACTTCTCCGAATTTCTACCAGCGGCTGAGGCGGCGGCGGCGGCGGTGATGTATGAATCTTATGCAATGTGA

Protein sequence

MDGGGGGGNRNDHTSLGGVRRRKPTKKTNQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDVDAGATPDLLHSTAAAAAQDYDSLTMNNNIPTTLGVELPAEDYLLGSFYDDFDDLILPPPLIGNFSEFLPAAEAAAAAVMYESYAM

Homology

[Close]

BLAST of Cp4.1LG19g02610 vs. Swiss-Prot
Match: SIB1_ARATH (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-07
Identity = 33/61 (54.10%), Postives = 39/61 (63.93%), Query Frame = 1


Query: 22 RKPTKKTNQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDV 81
          RK  K+  +  +  KPIKV YISNPM+V+T ASKF  LVQELTGQDA    P   +S   
Sbjct: 24 RKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSPSS 83

Query: 82 D 83
          D
Sbjct: 84 D 84

[Close]

BLAST of Cp4.1LG19g02610 vs. Swiss-Prot
Match: SIB2_ARATH (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=SIB2 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 1


Query: 22 RKPTKKTNQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQD-ADF-PDPSKFHSS 81
          R P K+  +     KPIKV YISNPM+V+T  SKF  LVQELTGQD AD  P P+ F + 
Sbjct: 21 RIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPSPTTFTAV 80

[Close]

BLAST of Cp4.1LG19g02610 vs. TrEMBL
Match: A0A0A0L3J8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.6e-38
Identity = 105/169 (62.13%), Postives = 124/169 (73.37%), Query Frame = 1


Query: 1   MDGGGGGGNRNDHTSLGGVRRRKPTKKTNQPNNK-KKPIKVVYISNPMKVKTSASKFMAL 60
           MD G   G+  DH +L  V RRKPTKKT QP N+ KKPIKVVYISNPMKV+TSAS FMAL
Sbjct: 1   MDAGTATGS--DHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMAL 60

Query: 61  VQELTGQDADFPDPSKFHSSDV-DAGATPDLLHSTAAAAAQD--YDSLTMNNNIPTTLGV 120
           VQELTGQDADFPDPSKF  S V D  A+ D L++T ++  +D    +L +N+N  ++L  
Sbjct: 61  VQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSN-NSSLVD 120

Query: 121 ELPAEDYLLGSFYDDFDDLILPPPLIGNFSEFLPAAEAAAAAVMYESYA 166
           E+PAED +LGSFYDDFDDLI P P+IGNFS  LP   A  AAV+YES A
Sbjct: 121 EVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLP---APVAAVVYESNA 163

[Close]

BLAST of Cp4.1LG19g02610 vs. TrEMBL
Match: W9R567_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013937 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 65/159 (40.88%), Postives = 91/159 (57.23%), Query Frame = 1


Query: 9   NRNDHTSLGGVRRRKPTKKT--NQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQ 68
           N N  TSL    +RKPTKKT  N    K +P+KVVYISNPMK+KTSAS+F ALVQELTGQ
Sbjct: 4   NSNVLTSL----QRKPTKKTSANNKTKKTRPVKVVYISNPMKIKTSASEFRALVQELTGQ 63

Query: 69  DADFPDPSKFHSSDVD--AGATPDLLHSTAAAAAQDYDSLTMNNNIPTTLGVELPAEDYL 128
           DA+FPDP+KF +++ +   G    +      + +Q+  +   NN+  TT           
Sbjct: 64  DAEFPDPTKFLATNGEDQVGVDSTVKIGGDHSNSQEQGATESNNSSTTTT---------- 123

Query: 129 LGSFYDDFDDLILPPPLIGNFSEFLPAAEAAAAAVMYES 164
             S Y+  DD +  P ++ +F   +    +A A+V Y+S
Sbjct: 124 --SRYEALDDDVFMPQMMESFEAGI-FPSSATASVWYDS 145

[Close]

BLAST of Cp4.1LG19g02610 vs. TrEMBL
Match: A0A068ULZ1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028988001 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-14
Identity = 56/115 (48.70%), Postives = 73/115 (63.48%), Query Frame = 1


Query: 26  KKTN-QPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDVDAG 85
           KKTN QP NKKKP+KVVYISNPMKVKTSAS+F ALVQELTGQDAD PDP+K+  +D   G
Sbjct: 10  KKTNKQPKNKKKPVKVVYISNPMKVKTSASEFRALVQELTGQDADMPDPTKYSDTDSVGG 69

Query: 86  ATPDLLHSTAAAAAQDYDSLTMNNNIPTTLGVELPAEDYLLGSFYDDFDDLILPP 140
           +  + + ST     +D D +     +     +   A+  + G+   + DDL+  P
Sbjct: 70  SCQEEV-STELKTMED-DQVVQQPLVQPKNEMPERADCNIYGTCDREDDDLLYMP 122

[Close]

BLAST of Cp4.1LG19g02610 vs. TrEMBL
Match: A0A059DHW1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02242 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-14
Identity = 60/136 (44.12%), Postives = 79/136 (58.09%), Query Frame = 1


Query: 16  LGGVRRRKPTKKTNQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSK 75
           L  +++RKPTK++     K KPIKVVYISNPM+VKTSAS+F ALVQ+LTG+DA+FPDP+K
Sbjct: 5   LCSMQKRKPTKRSKP---KSKPIKVVYISNPMRVKTSASQFRALVQKLTGRDAEFPDPAK 64

Query: 76  FHSSDVDAGATPDLLHSTAAAAAQDYDSLTMNNNIPTTLGVE--------LPAEDY--LL 135
           FH SD D G       +   AA  D        ++P    V+         P+ D+  L 
Sbjct: 65  FHGSDPD-GVGAAAPRAVVDAADDDVVEPGRRLSLPKVGSVQDLHHHHQNHPSGDHGRLG 124

Query: 136 GSFYDDFDDLILPPPL 142
              Y+ FDD+  P  L
Sbjct: 125 AGNYEPFDDVFTPQML 136

[Close]

BLAST of Cp4.1LG19g02610 vs. TrEMBL
Match: A0A061EVV1_THECC (VQ motif-containing protein, putative OS=Theobroma cacao GN=TCM_024241 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-13
Identity = 59/143 (41.26%), Postives = 80/143 (55.94%), Query Frame = 1


Query: 15  SLGGVRRRKPTKK--TNQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPD 74
           SLG ++  K  KK  + +  N  KPIKVVYISNPMKVKTSASKF ALVQELTGQDA+ PD
Sbjct: 4   SLGSLQHSKAAKKAKSKKKKNNNKPIKVVYISNPMKVKTSASKFRALVQELTGQDAELPD 63

Query: 75  PSKF-HSSDVDAGA---TPDLLHSTAAAAAQDY----DSLTMNNNIPTTLGVELPAEDY- 134
           P+KF  + D D G+    PD + ++    A +     D    ++  PT    ++P E + 
Sbjct: 64  PTKFTDTDDDDVGSNQKVPDAVKNSTDDHALEVPRVGDQAVHHHEQPTRAHHDVPFETFD 123

Query: 135 --LLGSFYDDFDDLILPPPLIGN 145
                    +FD ++   P + N
Sbjct: 124 EVFTPQMLREFDRVLASEPFLMN 146

[Close]

BLAST of Cp4.1LG19g02610 vs. TAIR10
Match: AT3G56710.1 (AT3G56710.1 sigma factor binding protein 1)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-08
Identity = 33/61 (54.10%), Postives = 39/61 (63.93%), Query Frame = 1


Query: 22 RKPTKKTNQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDV 81
          RK  K+  +  +  KPIKV YISNPM+V+T ASKF  LVQELTGQDA    P   +S   
Sbjct: 24 RKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSPSS 83

Query: 82 D 83
          D
Sbjct: 84 D 84

[Close]

BLAST of Cp4.1LG19g02610 vs. TAIR10
Match: AT2G41180.1 (AT2G41180.1 VQ motif-containing protein)

HSP 1 Score: 54.7 bits (130), Expect = 6.4e-08
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 1


Query: 22 RKPTKKTNQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQD-ADF-PDPSKFHSS 81
          R P K+  +     KPIKV YISNPM+V+T  SKF  LVQELTGQD AD  P P+ F + 
Sbjct: 21 RIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPSPTTFTAV 80

[Close]

BLAST of Cp4.1LG19g02610 vs. NCBI nr
Match: gi|778694743|ref|XP_011653858.1| (PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 9.5e-38
Identity = 105/169 (62.13%), Postives = 124/169 (73.37%), Query Frame = 1


Query: 1   MDGGGGGGNRNDHTSLGGVRRRKPTKKTNQPNNK-KKPIKVVYISNPMKVKTSASKFMAL 60
           MD G   G+  DH +L  V RRKPTKKT QP N+ KKPIKVVYISNPMKV+TSAS FMAL
Sbjct: 1   MDAGTATGS--DHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMAL 60

Query: 61  VQELTGQDADFPDPSKFHSSDV-DAGATPDLLHSTAAAAAQD--YDSLTMNNNIPTTLGV 120
           VQELTGQDADFPDPSKF  S V D  A+ D L++T ++  +D    +L +N+N  ++L  
Sbjct: 61  VQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSN-NSSLVD 120

Query: 121 ELPAEDYLLGSFYDDFDDLILPPPLIGNFSEFLPAAEAAAAAVMYESYA 166
           E+PAED +LGSFYDDFDDLI P P+IGNFS  LP   A  AAV+YES A
Sbjct: 121 EVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLP---APVAAVVYESNA 163

[Close]

BLAST of Cp4.1LG19g02610 vs. NCBI nr
Match: gi|659111355|ref|XP_008455708.1| (PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 3.4e-35
Identity = 102/169 (60.36%), Postives = 119/169 (70.41%), Query Frame = 1


Query: 1   MDGGGGGGNRNDHTSLGGVRRRKPTKKTNQPNNK-KKPIKVVYISNPMKVKTSASKFMAL 60
           MD G   GN N  T L  V RRKP KKT Q N K KKPIKVVYISNPMKV+TSAS+FMAL
Sbjct: 20  MDAGAATGN-NPRT-LDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMAL 79

Query: 61  VQELTGQDADFPDPSKFHSSDV-DAGATPDLLHSTAAAAAQD--YDSLTMNNNIPTTLGV 120
           VQELTGQDADFPDPSKF  S V D  A+ D L++T +    D    +L +N+N P+ +  
Sbjct: 80  VQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVD- 139

Query: 121 ELPAEDYLLGSFYDDFDDLILPPPLIGNFSEFLPAAEAAAAAVMYESYA 166
           ++PAED +LGSFYDDFDDLI PPP++GN S  LP      AAV+YES A
Sbjct: 140 DVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP---GPMAAVVYESNA 182

[Close]

BLAST of Cp4.1LG19g02610 vs. NCBI nr
Match: gi|703074146|ref|XP_010089743.1| (hypothetical protein L484_013937 [Morus notabilis])

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 65/159 (40.88%), Postives = 91/159 (57.23%), Query Frame = 1


Query: 9   NRNDHTSLGGVRRRKPTKKT--NQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQ 68
           N N  TSL    +RKPTKKT  N    K +P+KVVYISNPMK+KTSAS+F ALVQELTGQ
Sbjct: 4   NSNVLTSL----QRKPTKKTSANNKTKKTRPVKVVYISNPMKIKTSASEFRALVQELTGQ 63

Query: 69  DADFPDPSKFHSSDVD--AGATPDLLHSTAAAAAQDYDSLTMNNNIPTTLGVELPAEDYL 128
           DA+FPDP+KF +++ +   G    +      + +Q+  +   NN+  TT           
Sbjct: 64  DAEFPDPTKFLATNGEDQVGVDSTVKIGGDHSNSQEQGATESNNSSTTTT---------- 123

Query: 129 LGSFYDDFDDLILPPPLIGNFSEFLPAAEAAAAAVMYES 164
             S Y+  DD +  P ++ +F   +    +A A+V Y+S
Sbjct: 124 --SRYEALDDDVFMPQMMESFEAGI-FPSSATASVWYDS 145

[Close]

BLAST of Cp4.1LG19g02610 vs. NCBI nr
Match: gi|661886847|emb|CDP09565.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-14
Identity = 56/115 (48.70%), Postives = 73/115 (63.48%), Query Frame = 1


Query: 26  KKTN-QPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDVDAG 85
           KKTN QP NKKKP+KVVYISNPMKVKTSAS+F ALVQELTGQDAD PDP+K+  +D   G
Sbjct: 10  KKTNKQPKNKKKPVKVVYISNPMKVKTSASEFRALVQELTGQDADMPDPTKYSDTDSVGG 69

Query: 86  ATPDLLHSTAAAAAQDYDSLTMNNNIPTTLGVELPAEDYLLGSFYDDFDDLILPP 140
           +  + + ST     +D D +     +     +   A+  + G+   + DDL+  P
Sbjct: 70  SCQEEV-STELKTMED-DQVVQQPLVQPKNEMPERADCNIYGTCDREDDDLLYMP 122

[Close]

BLAST of Cp4.1LG19g02610 vs. NCBI nr
Match: gi|702247028|ref|XP_010056024.1| (PREDICTED: uncharacterized protein LOC104444112 [Eucalyptus grandis])

HSP 1 Score: 87.0 bits (214), Expect = 3.3e-14
Identity = 60/136 (44.12%), Postives = 79/136 (58.09%), Query Frame = 1


Query: 16  LGGVRRRKPTKKTNQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSK 75
           L  +++RKPTK++     K KPIKVVYISNPM+VKTSAS+F ALVQ+LTG+DA+FPDP+K
Sbjct: 5   LCSMQKRKPTKRSKP---KSKPIKVVYISNPMRVKTSASQFRALVQKLTGRDAEFPDPAK 64

Query: 76  FHSSDVDAGATPDLLHSTAAAAAQDYDSLTMNNNIPTTLGVE--------LPAEDY--LL 135
           FH SD D G       +   AA  D        ++P    V+         P+ D+  L 
Sbjct: 65  FHGSDPD-GVGAAAPRAVVDAADDDVVEPGRRLSLPKVGSVQDLHHHHQNHPSGDHGRLG 124

Query: 136 GSFYDDFDDLILPPPL 142
              Y+ FDD+  P  L
Sbjct: 125 AGNYEPFDDVFTPQML 136

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g02610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SIB1_ARATH	2.3e-07	54.10	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE...	[more]
SIB2_ARATH	1.1e-06	54.84	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=SIB2 PE...	[more]

BLAST of Cp4.1LG19g02610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3J8_CUCSA	6.6e-38	62.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G431960 PE=4 SV=1	[more]
W9R567_9ROSA	1.3e-14	40.88	Uncharacterized protein OS=Morus notabilis GN=L484_013937 PE=4 SV=1	[more]
A0A068ULZ1_COFCA	1.8e-14	48.70	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028988001 PE=4 SV=1	[more]
A0A059DHW1_EUCGR	2.3e-14	44.12	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02242 PE=4 SV=1	[more]
A0A061EVV1_THECC	1.9e-13	41.26	VQ motif-containing protein, putative OS=Theobroma cacao GN=TCM_024241 PE=4 SV=1	[more]

BLAST of Cp4.1LG19g02610 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G56710.1	1.3e-08	54.10	sigma factor binding protein 1	[more]
AT2G41180.1	6.4e-08	54.84	VQ motif-containing protein	[more]

BLAST of Cp4.1LG19g02610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778694743\|ref\|XP_011653858.1\|	9.5e-38	62.13	PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis sativus]	[more]
gi\|659111355\|ref\|XP_008455708.1\|	3.4e-35	60.36	PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis melo]	[more]
gi\|703074146\|ref\|XP_010089743.1\|	1.9e-14	40.88	hypothetical protein L484_013937 [Morus notabilis]	[more]
gi\|661886847\|emb\|CDP09565.1\|	2.5e-14	48.70	unnamed protein product [Coffea canephora]	[more]
gi\|702247028\|ref\|XP_010056024.1\|	3.3e-14	44.12	PREDICTED: uncharacterized protein LOC104444112 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0051091	positive regulation of sequence-specific DNA binding transcription factor activity
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g02610.1	Cp4.1LG19g02610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 43..68 score: 4.3
None	No IPR available	PANTHER	PTHR33624	FAMILY NOT NAMED	coord: 8..151 score: 2.6
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC-RELATED	coord: 8..151 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG19g02610	Cucsa.068360	Cucumber (Gy14) v1	cgycpeB0106
Cp4.1LG19g02610	CmaCh03G001350	Cucurbita maxima (Rimu)	cmacpeB672
Cp4.1LG19g02610	CmaCh07G010850	Cucurbita maxima (Rimu)	cmacpeB880
Cp4.1LG19g02610	CmoCh03G001590	Cucurbita moschata (Rifu)	cmocpeB621
Cp4.1LG19g02610	CmoCh07G011340	Cucurbita moschata (Rifu)	cmocpeB817
Cp4.1LG19g02610	Csa4G431960	Cucumber (Chinese Long) v2	cpecuB487
Cp4.1LG19g02610	MELO3C019076	Melon (DHL92) v3.5.1	cpemeB461
Cp4.1LG19g02610	CSPI04G19260	Wild cucumber (PI 183967)	cpecpiB488
Cp4.1LG19g02610	Lsi01G017790	Bottle gourd (USVL1VR-Ls)	cpelsiB391
Cp4.1LG19g02610	MELO3C019076.2	Melon (DHL92) v3.6.1	cpemedB545
Cp4.1LG19g02610	CsaV3_4G029660	Cucumber (Chinese Long) v3	cpecucB0599
Cp4.1LG19g02610	Bhi03G002023	Wax gourd	cpewgoB0612
Cp4.1LG19g02610	CsGy4G018180	Cucumber (Gy14) v2	cgybcpeB521
Cp4.1LG19g02610	Carg13305	Silver-seed gourd	carcpeB0830

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None