CmaCh03G001350 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G001350
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	VQ motif-containing protein, putative
Location	Cma_Chr03 : 1606702 .. 1608521 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTCGGCGCTTGGCTTTCCTTCTTCCACATTTATTTCTTGTCGGTTTCCTCCCTACCCCAATCCCTATATGTCCCCGCACTTTCTCTCCTTCTCTCACACCCCAAAAGAAAAACCCTTCTTTTTCCCTTCCAAAATGGACGGCAGCGCCGGCACCGGCACCGGAAACAGCCACAGACTCCTCGACGGCGTCCACCGGCGAAAGCCCACAAAGAAAACCAAACAGCCCAACAAAAACAAACCCATCAAAGTCGTGTACATATCCAACCCCATGAAGGTTCAAATCAGCGCATCTGGATTCATGGCTTTGGTCCAACAACTCACCGGCCAAGACGCCGAGTTTCCAGACTCCTCTAAGTTCCCACCCGCCGCCGCCTTCCCCGACATCCACGACACCACGGCGGATGCTAATCTGATGATGAATAACAACCCTTCACTTACTGTTGAGCCTCCGATGGAGGATGACCCCCTTCTTGGCACTTTCTATGATGACATTGACGATCTGATTTTTCCCCCTCCGGTGATCGGAAACTACCCAGCACTGCTTCCGGCGGCGGCGGCAACGGCGGTTTTGTATGAATCTTATGCAAGGTGAAAAAACATGTTGGCGAAAATCTTTAAATTCTCTCTTTAATTTTTGCATATTTTGTATATGAAATTAGAGAATAACAACTATTAATTATCATATATTTTGTTTTTATATTTAATTTCTAAATTTCAATTCTAAACTCGTAATTATATCAATTTAAACCCTAATTTCGCGAAAAAATAACGCAAACGAATCAATGTTATAATTAAATAAATGTTAGCTCATTTTTTTTAATTAATAGATTGAATTATGAAGTTCATATTGCAAGTTGATATTTAAAATTTTATAAATTATTTAAAAAATATTTTGATTTTGATTTTTCATGAAATTAATGGACCCAAACTGTACCTTTTTTGTTTGGTTAGGGTAATTTCAGCAAGTTGGGGAAAGGATTGAAGGGAAAGGGAATTGGGTGAGCCATGGAATATGATGTAACTCAACATCACAACCAAACAAAACCCTTAAAAGGTCAATATTTAAAACTTTATATTATTTAGATACAAATAATACACATTAATTAACCTTTAATTATAATAATCCTTTTTTCAAACGTTTAAAAAATGTTATTTGTTAAATATTTATTTATTTATTTTGAAACATTTAATTAAGATTTTATGTTTTGAAAAATTATCTGTCCTATAATTTAAAACTATTTGTAAAAGTTGTTGAATCATGATCATTACAAGCAAGTCGATACTTTATAAGTTGTTCGTAATTGTAGTTAGGTCAAAAATTTATTTTATCCCTATAATTACAATTTTTGTATTAGTGATTCTCTAATGAATAATTTGTTTATGATCCAATCATAAACTAAGCCTCTCTCAGGTTATGTAAATGGTGGGGTTCATTGTTCAAGTCTCAAAATCAACGCTTAAGAGGACTACTCATCTGCTTACTCTATGTGGGAAAAGTGAATTTCATCTCGTGAATTATGTTCTTAACTTTATATTAGATTAAGTACCCAAAATGGTAGGCATATGAATAAGCTACCAAACCTATTTTCACCAATGCAAAATAGAAGACAAACTCTCACAAGCAAGAGTTCATAACTCACTCAAGATTAAGATCGAGTCGCTAATGATCATCGGGTTTATAATGAGATTTAGTTGTCCAGTCTTCTAAAAACTCATTGTATAGGATACCCCTACTCACATATCTTCACATGAAACGAAGGCACCCATCTTTATCTATATATTCTCAACCATTTAAGTTATTACTTGAACATAATCCTC

mRNA sequence

TTGTCGGCGCTTGGCTTTCCTTCTTCCACATTTATTTCTTGTCGGTTTCCTCCCTACCCCAATCCCTATATGTCCCCGCACTTTCTCTCCTTCTCTCACACCCCAAAAGAAAAACCCTTCTTTTTCCCTTCCAAAATGGACGGCAGCGCCGGCACCGGCACCGGAAACAGCCACAGACTCCTCGACGGCGTCCACCGGCGAAAGCCCACAAAGAAAACCAAACAGCCCAACAAAAACAAACCCATCAAAGTCGTGTACATATCCAACCCCATGAAGGTTCAAATCAGCGCATCTGGATTCATGGCTTTGGTCCAACAACTCACCGGCCAAGACGCCGAGTTTCCAGACTCCTCTAAGTTCCCACCCGCCGCCGCCTTCCCCGACATCCACGACACCACGGCGGATGCTAATCTGATGATGAATAACAACCCTTCACTTACTGTTGAGCCTCCGATGGAGGATGACCCCCTTCTTGGCACTTTCTATGATGACATTGACGATCTGATTTTTCCCCCTCCGGTGATCGGAAACTACCCAGCACTGCTTCCGGCGGCGGCGGCAACGGCGGTTTTGTATGAATCTTATGCAAGGGTAATTTCAGCAAGTTGGGGAAAGGATTGAAGGGAAAGGGAATTGGGTGAGCCATGGAATATGATGTAACTCAACATCACAACCAAACAAAACCCTTAAAAGGTTATGTAAATGGTGGGGTTCATTGTTCAAGTCTCAAAATCAACGCTTAAGAGGACTACTCATCTGCTTACTCTATGTGGGAAAAGTGAATTTCATCTCGTGAATTATGTTCTTAACTTTATATTAGATTAAGTACCCAAAATGGTAGGCATATGAATAAGCTACCAAACCTATTTTCACCAATGCAAAATAGAAGACAAACTCTCACAAGCAAGAGTTCATAACTCACTCAAGATTAAGATCGAGTCGCTAATGATCATCGGGTTTATAATGAGATTTAGTTGTCCAGTCTTCTAAAAACTCATTGTATAGGATACCCCTACTCACATATCTTCACATGAAACGAAGGCACCCATCTTTATCTATATATTCTCAACCATTTAAGTTATTACTTGAACATAATCCTC

Coding sequence (CDS)

ATGTCCCCGCACTTTCTCTCCTTCTCTCACACCCCAAAAGAAAAACCCTTCTTTTTCCCTTCCAAAATGGACGGCAGCGCCGGCACCGGCACCGGAAACAGCCACAGACTCCTCGACGGCGTCCACCGGCGAAAGCCCACAAAGAAAACCAAACAGCCCAACAAAAACAAACCCATCAAAGTCGTGTACATATCCAACCCCATGAAGGTTCAAATCAGCGCATCTGGATTCATGGCTTTGGTCCAACAACTCACCGGCCAAGACGCCGAGTTTCCAGACTCCTCTAAGTTCCCACCCGCCGCCGCCTTCCCCGACATCCACGACACCACGGCGGATGCTAATCTGATGATGAATAACAACCCTTCACTTACTGTTGAGCCTCCGATGGAGGATGACCCCCTTCTTGGCACTTTCTATGATGACATTGACGATCTGATTTTTCCCCCTCCGGTGATCGGAAACTACCCAGCACTGCTTCCGGCGGCGGCGGCAACGGCGGTTTTGTATGAATCTTATGCAAGGGTAATTTCAGCAAGTTGGGGAAAGGATTGA

Protein sequence

MSPHFLSFSHTPKEKPFFFPSKMDGSAGTGTGNSHRLLDGVHRRKPTKKTKQPNKNKPIKVVYISNPMKVQISASGFMALVQQLTGQDAEFPDSSKFPPAAAFPDIHDTTADANLMMNNNPSLTVEPPMEDDPLLGTFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYARVISASWGKD

Homology

[Close]

BLAST of CmaCh03G001350 vs. Swiss-Prot
Match: SIB1_ARATH (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-08
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 1


Query: 41 VHRRKPTKKTKQPNKNKPIKVVYISNPMKVQISASGFMALVQQLTGQDA 90
          V R+ P +K K  + NKPIKV YISNPM+VQ  AS F  LVQ+LTGQDA
Sbjct: 22 VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDA 70

[Close]

BLAST of CmaCh03G001350 vs. Swiss-Prot
Match: SIB2_ARATH (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=SIB2 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.6e-08
Identity = 44/128 (34.38%), Postives = 58/128 (45.31%), Query Frame = 1


Query: 23  MDGSAGTGTGNSHRLLDGVHRRKPTKKTKQPNKNKPIKVVYISNPMKVQISASGFMALVQ 82
           MD S+ T   N  +      R  P +K K    +KPIKV YISNPM+V+   S F  LVQ
Sbjct: 1   MDQSSSTLLINQRKSSSSPTRIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQ 60

Query: 83  QLTGQDAEFPDSSKFPPAAAFPDIHDTTADANLMMNNNPSLTVEPPMEDDPLLGTFYDDI 142
           +LTGQDA     +  PP+       D        MN  P         D  + G +Y  +
Sbjct: 61  ELTGQDA-----ADLPPSPTTFTAVDLHRPCESEMNLEPL--------DGEVRGEYYSPL 115

Query: 143 DDLIFPPP 151
           D+ +F  P
Sbjct: 121 DEEVFNAP 115

[Close]

BLAST of CmaCh03G001350 vs. TrEMBL
Match: A0A0A0L3J8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.4e-41
Identity = 104/164 (63.41%), Postives = 119/164 (72.56%), Query Frame = 1


Query: 27  AGTGTGNSHRLLDGVHRRKPTKKTKQPNKN--KPIKVVYISNPMKVQISASGFMALVQQL 86
           AGT TG+ HR LD V+RRKPTKKTKQP     KPIKVVYISNPMKVQ SASGFMALVQ+L
Sbjct: 3   AGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQEL 62

Query: 87  TGQDAEFPDSSKFPP------AAAFPDIHDTTAD-------ANLMMN-NNPSLTVEPPME 146
           TGQDA+FPD SKFPP      AA+   +++T +         NL++N NN SL  E P E
Sbjct: 63  TGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVPAE 122

Query: 147 DDPLLGTFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 175
           DD +LG+FYDD DDLIFP PVIGN+  LLPA  A AV+YES AR
Sbjct: 123 DD-ILGSFYDDFDDLIFPSPVIGNFSGLLPAPVA-AVVYESNAR 164

[Close]

BLAST of CmaCh03G001350 vs. TrEMBL
Match: W9R567_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013937 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.3e-14
Identity = 56/144 (38.89%), Postives = 80/144 (55.56%), Query Frame = 1


Query: 43  RRKPTKKTKQPNKN---KPIKVVYISNPMKVQISASGFMALVQQLTGQDAEFPDSSKFPP 102
           +RKPTKKT   NK    +P+KVVYISNPMK++ SAS F ALVQ+LTGQDAEFPD +KF  
Sbjct: 12  QRKPTKKTSANNKTKKTRPVKVVYISNPMKIKTSASEFRALVQELTGQDAEFPDPTKFLA 71

Query: 103 AAAFPDI-----------HDTTADANLMMNNNPSLTVEPPMEDDPLLGTFYDDIDDLIFP 162
                 +           H  + +     +NN S T            + Y+ +DD +F 
Sbjct: 72  TNGEDQVGVDSTVKIGGDHSNSQEQGATESNNSSTTTT----------SRYEALDDDVFM 131

Query: 163 PPVIGNYPA-LLPAAAATAVLYES 172
           P ++ ++ A + P++A  +V Y+S
Sbjct: 132 PQMMESFEAGIFPSSATASVWYDS 145

[Close]

BLAST of CmaCh03G001350 vs. TrEMBL
Match: V7CXI4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G123400g PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.1e-12
Identity = 57/141 (40.43%), Postives = 83/141 (58.87%), Query Frame = 1


Query: 41  VHRRKPTKKTKQPNKN--KPIKVVYISNPMKVQISASGFMALVQQLTGQDAEF-PDSSKF 100
           V +R PTKKTK   KN   P+KVVYISNPMK++ SAS F ALVQ+LTGQDA+  P+ ++F
Sbjct: 10  VQQRAPTKKTKPKKKNIPHPVKVVYISNPMKIKTSASEFRALVQELTGQDAQSPPNPTRF 69

Query: 101 PPAAAFPDIHDTTADANLMMNN-------NPSLTVEPPMEDDPLLGTFYDDIDDLIFPPP 160
               A     D+++D  + +++       +P ++V+   +      +F    DD +F P 
Sbjct: 70  ---HALDSSDDSSSDKVISVDDHVIPIPMDPDISVQQQQQHLQPSSSFEAPDDDDVFTPQ 129

Query: 161 VIGNYPALLPAAAATAVLYES 172
           +I N  ALLPA    ++ YES
Sbjct: 130 MIENISALLPA----SLFYES 143

[Close]

BLAST of CmaCh03G001350 vs. TrEMBL
Match: B9IHR2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s03600g PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.0e-12
Identity = 59/151 (39.07%), Postives = 76/151 (50.33%), Query Frame = 1


Query: 40  GVHRRKPTKKTKQPNKNKPIKVVYISNPMKVQISASGFMALVQQLTGQDAEFPDSSKFPP 99
           GV  RK TK  K   K KP+KVVYISNPMK +ISASGF ALVQ+LTGQD+E PD +K   
Sbjct: 12  GVQERKGTKIAK--TKKKPMKVVYISNPMKFKISASGFRALVQELTGQDSELPDPTK--- 71

Query: 100 AAAFPDIHDTTADANLMMNNNPSLTV-----------------EPPMEDDPLLGTFYDDI 159
                D  D     N    +N S TV                 +PP   D   G+F D  
Sbjct: 72  ---IVDDDDHGVGGNYRTVSNASKTVVDDHCALEVPTKDPSQEQPPARQDAPFGSFDD-- 131

Query: 160 DDLIFPPPVIGNYPALLPAAAATAVLYESYA 174
              +F P ++ N   ++P+ +     YE+Y+
Sbjct: 132 ---VFMPQMLENVAGIMPSNS----WYEAYS 145

[Close]

BLAST of CmaCh03G001350 vs. TrEMBL
Match: A0A059DHW1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02242 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.0e-11
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 1


Query: 37 LLDGVHRRKPTKKTKQPNKNKPIKVVYISNPMKVQISASGFMALVQQLTGQDAEFPDSSK 96
          +L  + +RKPTK++K   K+KPIKVVYISNPM+V+ SAS F ALVQ+LTG+DAEFPD +K
Sbjct: 4  MLCSMQKRKPTKRSKP--KSKPIKVVYISNPMRVKTSASQFRALVQKLTGRDAEFPDPAK 62

Query: 97 F 98
          F
Sbjct: 64 F 62

[Close]

BLAST of CmaCh03G001350 vs. TAIR10
Match: AT3G56710.1 (AT3G56710.1 sigma factor binding protein 1)

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-09
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 1


Query: 41 VHRRKPTKKTKQPNKNKPIKVVYISNPMKVQISASGFMALVQQLTGQDA 90
          V R+ P +K K  + NKPIKV YISNPM+VQ  AS F  LVQ+LTGQDA
Sbjct: 22 VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDA 70

[Close]

BLAST of CmaCh03G001350 vs. TAIR10
Match: AT2G41180.1 (AT2G41180.1 VQ motif-containing protein)

HSP 1 Score: 58.5 bits (140), Expect = 4.9e-09
Identity = 44/128 (34.38%), Postives = 58/128 (45.31%), Query Frame = 1


Query: 23  MDGSAGTGTGNSHRLLDGVHRRKPTKKTKQPNKNKPIKVVYISNPMKVQISASGFMALVQ 82
           MD S+ T   N  +      R  P +K K    +KPIKV YISNPM+V+   S F  LVQ
Sbjct: 1   MDQSSSTLLINQRKSSSSPTRIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQ 60

Query: 83  QLTGQDAEFPDSSKFPPAAAFPDIHDTTADANLMMNNNPSLTVEPPMEDDPLLGTFYDDI 142
           +LTGQDA     +  PP+       D        MN  P         D  + G +Y  +
Sbjct: 61  ELTGQDA-----ADLPPSPTTFTAVDLHRPCESEMNLEPL--------DGEVRGEYYSPL 115

Query: 143 DDLIFPPP 151
           D+ +F  P
Sbjct: 121 DEEVFNAP 115

[Close]

BLAST of CmaCh03G001350 vs. NCBI nr
Match: gi|659111355|ref|XP_008455708.1| (PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis melo])

HSP 1 Score: 179.9 bits (455), Expect = 4.1e-42
Identity = 111/185 (60.00%), Postives = 126/185 (68.11%), Query Frame = 1


Query: 6   LSFSHTPKEKPFFFPSKMDGSAGTGTGNSHRLLDGVHRRKPTKKTKQPNKN--KPIKVVY 65
           L+ S  P + PF  PSKMD  AG  TGN+ R LD V+RRKP KKTKQ NK   KPIKVVY
Sbjct: 4   LTLSPFPLKNPFS-PSKMD--AGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVY 63

Query: 66  ISNPMKVQISASGFMALVQQLTGQDAEFPDSSKFPPAAAFPDI-------------HDTT 125
           ISNPMKVQ SAS FMALVQ+LTGQDA+FPD SKFPP+A   D               D  
Sbjct: 64  ISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDD 123

Query: 126 ADANLMMN-NNPSLTVEPPMEDDPLLGTFYDDIDDLIFPPPVIGNYPALLPAAAATAVLY 175
             +NL++N NNPSL  + P EDD +LG+FYDD DDLIFPPPV+GN   LLP   A AV+Y
Sbjct: 124 GASNLIVNSNNPSLVDDVPAEDD-ILGSFYDDFDDLIFPPPVMGNLSGLLPGPMA-AVVY 183

[Close]

BLAST of CmaCh03G001350 vs. NCBI nr
Match: gi|778694743|ref|XP_011653858.1| (PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 3.5e-41
Identity = 104/164 (63.41%), Postives = 119/164 (72.56%), Query Frame = 1


Query: 27  AGTGTGNSHRLLDGVHRRKPTKKTKQPNKN--KPIKVVYISNPMKVQISASGFMALVQQL 86
           AGT TG+ HR LD V+RRKPTKKTKQP     KPIKVVYISNPMKVQ SASGFMALVQ+L
Sbjct: 3   AGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQEL 62

Query: 87  TGQDAEFPDSSKFPP------AAAFPDIHDTTAD-------ANLMMN-NNPSLTVEPPME 146
           TGQDA+FPD SKFPP      AA+   +++T +         NL++N NN SL  E P E
Sbjct: 63  TGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVPAE 122

Query: 147 DDPLLGTFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 175
           DD +LG+FYDD DDLIFP PVIGN+  LLPA  A AV+YES AR
Sbjct: 123 DD-ILGSFYDDFDDLIFPSPVIGNFSGLLPAPVA-AVVYESNAR 164

[Close]

BLAST of CmaCh03G001350 vs. NCBI nr
Match: gi|703074146|ref|XP_010089743.1| (hypothetical protein L484_013937 [Morus notabilis])

HSP 1 Score: 86.3 bits (212), Expect = 6.2e-14
Identity = 56/144 (38.89%), Postives = 80/144 (55.56%), Query Frame = 1


Query: 43  RRKPTKKTKQPNKN---KPIKVVYISNPMKVQISASGFMALVQQLTGQDAEFPDSSKFPP 102
           +RKPTKKT   NK    +P+KVVYISNPMK++ SAS F ALVQ+LTGQDAEFPD +KF  
Sbjct: 12  QRKPTKKTSANNKTKKTRPVKVVYISNPMKIKTSASEFRALVQELTGQDAEFPDPTKFLA 71

Query: 103 AAAFPDI-----------HDTTADANLMMNNNPSLTVEPPMEDDPLLGTFYDDIDDLIFP 162
                 +           H  + +     +NN S T            + Y+ +DD +F 
Sbjct: 72  TNGEDQVGVDSTVKIGGDHSNSQEQGATESNNSSTTTT----------SRYEALDDDVFM 131

Query: 163 PPVIGNYPA-LLPAAAATAVLYES 172
           P ++ ++ A + P++A  +V Y+S
Sbjct: 132 PQMMESFEAGIFPSSATASVWYDS 145

[Close]

BLAST of CmaCh03G001350 vs. NCBI nr
Match: gi|1021527873|ref|XP_016207470.1| (PREDICTED: vacuolar protein sorting-associated protein 13-like protein [Arachis ipaensis])

HSP 1 Score: 83.6 bits (205), Expect = 4.0e-13
Identity = 64/139 (46.04%), Postives = 84/139 (60.43%), Query Frame = 1


Query: 32  GNSHRLLDGVHRRKPTKKT-KQPNKN-----KPIKVVYISNPMKVQISASGFMALVQQLT 91
           GNS   ++GV ++ PTK++ KQ  KN     K IKVVYISNPMKV+ SAS F ALVQ+LT
Sbjct: 5   GNSSSAMNGVQQKTPTKRSNKQKKKNNNNNKKEIKVVYISNPMKVKTSASEFRALVQELT 64

Query: 92  GQDAEFP-DSSKFPPAAAFPDIHDTTADANLMMNNNPSLTVEPPMEDDPLLGTFYDDIDD 151
           GQDAEFP DSS+F     +   HD   D+N   NNN +            +G  YD+++D
Sbjct: 65  GQDAEFPYDSSRF---KGYGSDHDGDDDSN---NNNNTKGGYDDNNCTDKVG--YDEVND 124

Query: 152 ---LIFPPPVIGNYPALLP 161
              ++ PPP   + P+LLP
Sbjct: 125 DTLVVVPPP---SPPSLLP 132

[Close]

BLAST of CmaCh03G001350 vs. NCBI nr
Match: gi|593798112|ref|XP_007162094.1| (hypothetical protein PHAVU_001G123400g [Phaseolus vulgaris])

HSP 1 Score: 80.1 bits (196), Expect = 4.4e-12
Identity = 57/141 (40.43%), Postives = 83/141 (58.87%), Query Frame = 1


Query: 41  VHRRKPTKKTKQPNKN--KPIKVVYISNPMKVQISASGFMALVQQLTGQDAEF-PDSSKF 100
           V +R PTKKTK   KN   P+KVVYISNPMK++ SAS F ALVQ+LTGQDA+  P+ ++F
Sbjct: 10  VQQRAPTKKTKPKKKNIPHPVKVVYISNPMKIKTSASEFRALVQELTGQDAQSPPNPTRF 69

Query: 101 PPAAAFPDIHDTTADANLMMNN-------NPSLTVEPPMEDDPLLGTFYDDIDDLIFPPP 160
               A     D+++D  + +++       +P ++V+   +      +F    DD +F P 
Sbjct: 70  ---HALDSSDDSSSDKVISVDDHVIPIPMDPDISVQQQQQHLQPSSSFEAPDDDDVFTPQ 129

Query: 161 VIGNYPALLPAAAATAVLYES 172
           +I N  ALLPA    ++ YES
Sbjct: 130 MIENISALLPA----SLFYES 143

The following BLAST results are available for this feature:

BLAST of CmaCh03G001350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SIB1_ARATH	5.1e-08	63.27	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE...	[more]
SIB2_ARATH	8.6e-08	34.38	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=SIB2 PE...	[more]

BLAST of CmaCh03G001350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3J8_CUCSA	2.4e-41	63.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G431960 PE=4 SV=1	[more]
W9R567_9ROSA	4.3e-14	38.89	Uncharacterized protein OS=Morus notabilis GN=L484_013937 PE=4 SV=1	[more]
V7CXI4_PHAVU	3.1e-12	40.43	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G123400g PE=4 SV=1	[more]
B9IHR2_POPTR	9.0e-12	39.07	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s03600g PE=4 SV=1	[more]
A0A059DHW1_EUCGR	2.0e-11	65.57	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02242 PE=4 SV=1	[more]

BLAST of CmaCh03G001350 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G56710.1	2.9e-09	63.27	sigma factor binding protein 1	[more]
AT2G41180.1	4.9e-09	34.38	VQ motif-containing protein	[more]

BLAST of CmaCh03G001350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111355\|ref\|XP_008455708.1\|	4.1e-42	60.00	PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis melo]	[more]
gi\|778694743\|ref\|XP_011653858.1\|	3.5e-41	63.41	PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis sativus]	[more]
gi\|703074146\|ref\|XP_010089743.1\|	6.2e-14	38.89	hypothetical protein L484_013937 [Morus notabilis]	[more]
gi\|1021527873\|ref\|XP_016207470.1\|	4.0e-13	46.04	PREDICTED: vacuolar protein sorting-associated protein 13-like protein [Arachis ...	[more]
gi\|593798112\|ref\|XP_007162094.1\|	4.4e-12	40.43	hypothetical protein PHAVU_001G123400g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0051091	positive regulation of sequence-specific DNA binding transcription factor activity
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G001350.1	CmaCh03G001350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 64..89 score: 2.3
None	No IPR available	PANTHER	PTHR33624	FAMILY NOT NAMED	coord: 43..174 score: 7.2
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC-RELATED	coord: 43..174 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G001350	Cucsa.068360	Cucumber (Gy14) v1	cgycmaB0109
CmaCh03G001350	Cucsa.337760	Cucumber (Gy14) v1	cgycmaB0938
CmaCh03G001350	Cla002876	Watermelon (97103) v1	cmawmB614
CmaCh03G001350	Csa4G431960	Cucumber (Chinese Long) v2	cmacuB669
CmaCh03G001350	Csa3G820480	Cucumber (Chinese Long) v2	cmacuB662
CmaCh03G001350	MELO3C019076	Melon (DHL92) v3.5.1	cmameB612
CmaCh03G001350	MELO3C009755	Melon (DHL92) v3.5.1	cmameB602
CmaCh03G001350	ClCG10G016220	Watermelon (Charleston Gray)	cmawcgB573
CmaCh03G001350	ClCG04G004500	Watermelon (Charleston Gray)	cmawcgB588
CmaCh03G001350	CSPI03G37800	Wild cucumber (PI 183967)	cmacpiB670
CmaCh03G001350	CSPI04G19260	Wild cucumber (PI 183967)	cmacpiB678
CmaCh03G001350	CmoCh07G011340	Cucurbita moschata (Rifu)	cmacmoB668
CmaCh03G001350	CmoCh03G001590	Cucurbita moschata (Rifu)	cmacmoB657
CmaCh03G001350	Lsi01G017790	Bottle gourd (USVL1VR-Ls)	cmalsiB601
CmaCh03G001350	Cp4.1LG10g11090	Cucurbita pepo (Zucchini)	cmacpeB655
CmaCh03G001350	Cp4.1LG19g02610	Cucurbita pepo (Zucchini)	cmacpeB672
CmaCh03G001350	MELO3C009755.2	Melon (DHL92) v3.6.1	cmamedB686
CmaCh03G001350	MELO3C019076.2	Melon (DHL92) v3.6.1	cmamedB697
CmaCh03G001350	CsaV3_3G040160	Cucumber (Chinese Long) v3	cmacucB0791
CmaCh03G001350	CsaV3_4G029660	Cucumber (Chinese Long) v3	cmacucB0798
CmaCh03G001350	Cla97C10G199120	Watermelon (97103) v2	cmawmbB674
CmaCh03G001350	Cla97C04G071190	Watermelon (97103) v2	cmawmbB687
CmaCh03G001350	Bhi03G002023	Wax gourd	cmawgoB0793
CmaCh03G001350	CsGy4G018180	Cucumber (Gy14) v2	cgybcmaB534
CmaCh03G001350	Carg13305	Silver-seed gourd	carcmaB0812

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh03G001350	CmaCh07G010850	Cucurbita maxima (Rimu)	cmacmaB524

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G001350	Cucurbita maxima (Rimu)	cmacmaB271
CmaCh03G001350	Cucurbita moschata (Rifu)	cmacmoB641
CmaCh03G001350	Cucurbita moschata (Rifu)	cmacmoB654
CmaCh03G001350	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G001350	Cucurbita pepo (Zucchini)	cmacpeB682
CmaCh03G001350	Bottle gourd (USVL1VR-Ls)	cmalsiB611
CmaCh03G001350	Cucumber (Gy14) v2	cgybcmaB409