Cucsa.337760 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.337760
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	VQ motif-containing protein, putative
Location	scaffold03356 : 765288 .. 766585 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGCATGGTATATTACTACATAGCATAGTAGTGGATTCTGATTCACAATCTGCAATCCGCAATCCGCATCCGTGGCTGCTTTTCACTATGACGTCATCACAAAAAGTCGACATGACGTCACGACAGAGACGACTTGTCGTTTACCTCGCGGCGGTCCAGTGCATTATTGGTGTATAAAAGCGTACCATCCTCCACGCTATCTAATACATCGTGGAACACACGCTCAAGGTAAAAGGGAGAGGCGTAATTAACCTCCCATGCGCCACGCGGTTGTTGAGCGCGTGAATTTGAGAAGATTTGTTTTCTCCTTGGGGTTCTTCAACGCCATTGGCTTACCAAATTTTGCCAATTTCCTGTGATTTCTCTCTCTTTTTCTTTTCTTTTCTTTTTTTTTGAATTATATAATCTTTACTTTAATATTTGTTACCAAAATTCATTTCATCAAAAATCTCTATTACAAAACAGCACTTATATTGTTCCATAATTTAGAAAAAATAATTTATTTTTATTCCTAAGTTTAGAACGTAACTAAAAATAAATAAAAAGATAAGACGGTAACTTTTGAAATAATAGAGTATCAACGTACATAAATCAAACTTTTTTTTTTCCTCCTGTCATTCCAAGAAGCCTCCTACTTATGATTTTGCAGCCACCAAACACTTTTCTTTCTCCCATAAATTAAACCCTCAAAAACTGCCTCTTCACGAACACGAACTCGAAATAATGGATCGAAGTTTACTAGTAAGTGAGCTAACGACGACGATGAAGAAGAACACGAAAACAACACGAAAAAGGAAATCATGTGAAGAAAATAAGCAACCGCTTAAAGTTGTATACATATCGAACCCGATGAGGGTTCACACAAGCGCATCTGAATTTAGAGCCTTAGTCCAAGAACTAACGGGACGAGATGCGGAGTTTCCTGACCCGACTAAGTTCTATCCAGCGTCGTCGTGCGAGATCATGAATGATGATGATGTTGAGAAGAAAGTAGTAGCAGCAGAAGGAGAGGAGGATGAGCAAGAACTGTTGATTGATTCAAGCTGTGATGATGATTTCTTAAGGAGTTCATATGAAAGCTTGGAGGATATTTTGAGGAGAGATGTGATGGAGAACTTTGGAGCCATCTCTACATCTTTATTCAATCCTTTGGTTTAGTATAATGATTGAGGTTTTCATCTTTATTCTCTCAGCTTTCATTATAATTTAGCTATATATTTCAAGAGCCTGTCCAAAAATAAATGAAATGCACAATATTGTAATGTGTATCTTTAATTTACTCACTCTATCATAATCCA

mRNA sequence

GTGCATGGTATATTACTACATAGCATAGTAGTGGATTCTGATTCACAATCTGCAATCCGCAATCCGCATCCGTGGCTGCTTTTCACTATGACGTCATCACAAAAAGTCGACATGACGTCACGACAGAGACGACTTGTCGTTTACCTCGCGGCGGTCCAGTGCATTATTGGTGTATAAAAGCGTACCATCCTCCACGCTATCTAATACATCGTGGAACACACGCTCAAGGTAAAAGGGAGAGGCGTAATTAACCTCCCATGCGCCACGCGGTTGTTGAGCGCGTGAATTTGAGAAGATTTGTTTTCTCCTTGGGGTTCTTCAACGCCATTGGCTTACCAAATTTTGCCAATTTCCTGTGATttctctctctttttcttttcttttctttttttttGAATTATATAATCTTTACTTTAATATTTGTTACCAAAATTCATTTCATCAAAAATCTCTATTACAAAACAGCACTTATATTGTTCCataatttagaaaaaataatttatttttattCCTAAGTTTAGAACGTAACTAAAAATAAATAAAAAGATAAGACGGTAACTTTTGAAATAATAGAGTATCAACGTACATAAATCAAACTTTTTTTTTTCCTCCTGTCATTCCAAGAAGCCTCCTACTTATGATTTTGCAGCCACCAAACACTTTTCTTTCTCCCATAAATTAAACCCTCAAAAACTGCCTCTTCACGAACACGAACTCGAAATAATGGATCGAAGTTTACTAGTAAGTGAGCTAACGACGACGATGAAGAAGAACACGAAAACAACACGAAAAAGGAAATCATGTGAAGAAAATAAGCAACCGCTTAAAGTTGTATACATATCGAACCCGATGAGGGTTCACACAAGCGCATCTGAATTTAGAGCCTTAGTCCAAGAACTAACGGGACGAGATGCGGAGTTTCCTGACCCGACTAAGTTCTATCCAGCGTCGTCGTGCGAGATCATGAATGATGATGATGTTGAGAAGAAAGTAGTAGCAGCAGAAGGAGAGGAGGATGAGCAAGAACTGTTGATTGATTCAAGCTGTGATGATGATTTCTTAAGGAGTTCATATGAAAGCTTGGAGGATATTTTGAGGAGAGATGTGATGGAGAACTTTGGAGCCATCTCTACATCTTTATTCAATCCTTTGGTTTAGTATAATGATTGAGGTTTTCATCTTTATTCTCTCAGCTTTCATTATAATTTAGCTATATATTTCAAGAGCCTGTCCAAAAATAAATGAAATGCACAATATTGTAATGTGTATCTTTAATTTACTCACTCTATCATAATCCA

Coding sequence (CDS)

ATGGATCGAAGTTTACTAGTAAGTGAGCTAACGACGACGATGAAGAAGAACACGAAAACAACACGAAAAAGGAAATCATGTGAAGAAAATAAGCAACCGCTTAAAGTTGTATACATATCGAACCCGATGAGGGTTCACACAAGCGCATCTGAATTTAGAGCCTTAGTCCAAGAACTAACGGGACGAGATGCGGAGTTTCCTGACCCGACTAAGTTCTATCCAGCGTCGTCGTGCGAGATCATGAATGATGATGATGTTGAGAAGAAAGTAGTAGCAGCAGAAGGAGAGGAGGATGAGCAAGAACTGTTGATTGATTCAAGCTGTGATGATGATTTCTTAAGGAGTTCATATGAAAGCTTGGAGGATATTTTGAGGAGAGATGTGATGGAGAACTTTGGAGCCATCTCTACATCTTTATTCAATCCTTTGGTTTAG

Protein sequence

MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPLV*

Homology

[Close]

BLAST of Cucsa.337760 vs. Swiss-Prot
Match: SIB1_ARATH (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.2e-09
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 1


Query: 11 TTTMKKNTKTTRKRKSCEENKQ------PLKVVYISNPMRVHTSASEFRALVQELTGRDA 70
          TT++ K   +   RKS ++ K+      P+KV YISNPMRV T AS+FR LVQELTG+DA
Sbjct: 11 TTSLDKKKPSPVSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDA 70

Query: 71 EFPDPTKFYPASS 78
              P   Y  SS
Sbjct: 71 VDLQPEPIYSPSS 83

[Close]

BLAST of Cucsa.337760 vs. Swiss-Prot
Match: SIB2_ARATH (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=SIB2 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-07
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 1


Query: 22 RKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEF--PDPTKF 73
          +KRKS   +K P+KV YISNPMRV T  S+FR LVQELTG+DA    P PT F
Sbjct: 26 QKRKSTTTHK-PIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPSPTTF 77

[Close]

BLAST of Cucsa.337760 vs. TrEMBL
Match: A0A0A0LFH5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G820480 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.2e-74
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1


Query: 1   MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELT 60
           MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELT
Sbjct: 1   MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELT 60

Query: 61  GRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESL 120
           GRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESL
Sbjct: 61  GRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESL 120

Query: 121 EDILRRDVMENFGAISTSLFNPLV 145
           EDILRRDVMENFGAISTSLFNPLV
Sbjct: 121 EDILRRDVMENFGAISTSLFNPLV 144

[Close]

BLAST of Cucsa.337760 vs. TrEMBL
Match: A0A0A0L3J8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.3e-17
Identity = 57/132 (43.18%), Postives = 80/132 (60.61%), Query Frame = 1


Query: 15  KKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYP 74
           +K TK T++ K+    K+P+KVVYISNPM+V TSAS F ALVQELTG+DA+FPDP+KF P
Sbjct: 20  RKPTKKTKQPKN--RLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPP 79

Query: 75  ASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSS----------CDDDFLRSSYESLED-I 134
           ++ C+     D     +++ GE+D    LI +S           +DD L S Y+  +D I
Sbjct: 80  SAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLI 139

Query: 135 LRRDVMENFGAI 136
               V+ NF  +
Sbjct: 140 FPSPVIGNFSGL 149

[Close]

BLAST of Cucsa.337760 vs. TrEMBL
Match: W9R567_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013937 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-16
Identity = 53/126 (42.06%), Postives = 77/126 (61.11%), Query Frame = 1


Query: 10  LTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP 69
           LT+  +K TK T      ++  +P+KVVYISNPM++ TSASEFRALVQELTG+DAEFPDP
Sbjct: 8   LTSLQRKPTKKTSANNKTKKT-RPVKVVYISNPMKIKTSASEFRALVQELTGQDAEFPDP 67

Query: 70  TKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESL-EDILRRDV 129
           TKF   +  + +  D   K  +  +    +++   +S+       S YE+L +D+    +
Sbjct: 68  TKFLATNGEDQVGVDSTVK--IGGDHSNSQEQGATESNNSSTTTTSRYEALDDDVFMPQM 127

Query: 130 MENFGA 135
           ME+F A
Sbjct: 128 MESFEA 130

[Close]

BLAST of Cucsa.337760 vs. TrEMBL
Match: A0A068ULZ1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028988001 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 1


Query: 17  NTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPAS 76
           N K T K+   +  K+P+KVVYISNPM+V TSASEFRALVQELTG+DA+ PDPTK+    
Sbjct: 8   NQKKTNKQP--KNKKKPVKVVYISNPMKVKTSASEFRALVQELTGQDADMPDPTKYSDTD 67

Query: 77  SCEIMNDDDVEKKVVAAEGEEDEQELLI 105
           S      ++V  ++   E ++  Q+ L+
Sbjct: 68  SVGGSCQEEVSTELKTMEDDQVVQQPLV 93

[Close]

BLAST of Cucsa.337760 vs. TrEMBL
Match: A0A061EVV1_THECC (VQ motif-containing protein, putative OS=Theobroma cacao GN=TCM_024241 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 1


Query: 16  KNTKTTRKRKSCEE--NKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFY 75
           +++K  +K KS ++  N +P+KVVYISNPM+V TSAS+FRALVQELTG+DAE PDPTKF 
Sbjct: 9   QHSKAAKKAKSKKKKNNNKPIKVVYISNPMKVKTSASKFRALVQELTGQDAELPDPTKFT 68

Query: 76  PASSCEIMNDDDV---EKKVVAAEGEEDEQEL 103
                   +DDDV   +K   A +   D+  L
Sbjct: 69  DT------DDDDVGSNQKVPDAVKNSTDDHAL 94

[Close]

BLAST of Cucsa.337760 vs. TAIR10
Match: AT3G56710.1 (AT3G56710.1 sigma factor binding protein 1)

HSP 1 Score: 62.0 bits (149), Expect = 3.5e-10
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 1


Query: 11 TTTMKKNTKTTRKRKSCEENKQ------PLKVVYISNPMRVHTSASEFRALVQELTGRDA 70
          TT++ K   +   RKS ++ K+      P+KV YISNPMRV T AS+FR LVQELTG+DA
Sbjct: 11 TTSLDKKKPSPVSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDA 70

Query: 71 EFPDPTKFYPASS 78
              P   Y  SS
Sbjct: 71 VDLQPEPIYSPSS 83

[Close]

BLAST of Cucsa.337760 vs. TAIR10
Match: AT2G41180.1 (AT2G41180.1 VQ motif-containing protein)

HSP 1 Score: 57.4 bits (137), Expect = 8.6e-09
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 1


Query: 22 RKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEF--PDPTKF 73
          +KRKS   +K P+KV YISNPMRV T  S+FR LVQELTG+DA    P PT F
Sbjct: 26 QKRKSTTTHK-PIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPSPTTF 77

[Close]

BLAST of Cucsa.337760 vs. NCBI nr
Match: gi|778685199|ref|XP_011652185.1| (PREDICTED: uncharacterized protein LOC105434994 [Cucumis sativus])

HSP 1 Score: 286.2 bits (731), Expect = 3.2e-74
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1


Query: 1   MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELT 60
           MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELT
Sbjct: 1   MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELT 60

Query: 61  GRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESL 120
           GRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESL
Sbjct: 61  GRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESL 120

Query: 121 EDILRRDVMENFGAISTSLFNPLV 145
           EDILRRDVMENFGAISTSLFNPLV
Sbjct: 121 EDILRRDVMENFGAISTSLFNPLV 144

[Close]

BLAST of Cucsa.337760 vs. NCBI nr
Match: gi|659085802|ref|XP_008443611.1| (PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 242.7 bits (618), Expect = 4.1e-61
Identity = 126/144 (87.50%), Postives = 134/144 (93.06%), Query Frame = 1


Query: 1   MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELT 60
           MDR+LLVSELTTT  K  KTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELT
Sbjct: 1   MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELT 60

Query: 61  GRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESL 120
           GRDAEFPDP+KFYPA SCEI+  +D+EKKVVA +GE+DEQELLIDSSCDDDF RSS+ESL
Sbjct: 61  GRDAEFPDPSKFYPA-SCEIVM-NDLEKKVVADQGEDDEQELLIDSSCDDDFWRSSFESL 120

Query: 121 EDILRRDVMENFGAISTSLFNPLV 145
           EDILRRDVMENFGAISTSL NPLV
Sbjct: 121 EDILRRDVMENFGAISTSLINPLV 142

[Close]

BLAST of Cucsa.337760 vs. NCBI nr
Match: gi|778694743|ref|XP_011653858.1| (PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 57/132 (43.18%), Postives = 80/132 (60.61%), Query Frame = 1


Query: 15  KKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYP 74
           +K TK T++ K+    K+P+KVVYISNPM+V TSAS F ALVQELTG+DA+FPDP+KF P
Sbjct: 20  RKPTKKTKQPKN--RLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPP 79

Query: 75  ASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSS----------CDDDFLRSSYESLED-I 134
           ++ C+     D     +++ GE+D    LI +S           +DD L S Y+  +D I
Sbjct: 80  SAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLI 139

Query: 135 LRRDVMENFGAI 136
               V+ NF  +
Sbjct: 140 FPSPVIGNFSGL 149

[Close]

BLAST of Cucsa.337760 vs. NCBI nr
Match: gi|659111355|ref|XP_008455708.1| (PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = 1


Query: 22  RKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIM 81
           + ++S ++ K+P+KVVYISNPM+V TSASEF ALVQELTG+DA+FPDP+KF P++ C+  
Sbjct: 44  KTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDA 103

Query: 82  NDDDVEKKVVAAEGEEDEQELLI----------DSSCDDDFLRSSYESLEDIL 125
              D     V+  G++D    LI          D   +DD L S Y+  +D++
Sbjct: 104 ASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLI 156

[Close]

BLAST of Cucsa.337760 vs. NCBI nr
Match: gi|703074146|ref|XP_010089743.1| (hypothetical protein L484_013937 [Morus notabilis])

HSP 1 Score: 92.4 bits (228), Expect = 6.8e-16
Identity = 53/126 (42.06%), Postives = 77/126 (61.11%), Query Frame = 1


Query: 10  LTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP 69
           LT+  +K TK T      ++  +P+KVVYISNPM++ TSASEFRALVQELTG+DAEFPDP
Sbjct: 8   LTSLQRKPTKKTSANNKTKKT-RPVKVVYISNPMKIKTSASEFRALVQELTGQDAEFPDP 67

Query: 70  TKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESL-EDILRRDV 129
           TKF   +  + +  D   K  +  +    +++   +S+       S YE+L +D+    +
Sbjct: 68  TKFLATNGEDQVGVDSTVK--IGGDHSNSQEQGATESNNSSTTTTSRYEALDDDVFMPQM 127

Query: 130 MENFGA 135
           ME+F A
Sbjct: 128 MESFEA 130

The following BLAST results are available for this feature:

BLAST of Cucsa.337760 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SIB1_ARATH	6.2e-09	49.32	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE...	[more]
SIB2_ARATH	1.5e-07	62.26	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=SIB2 PE...	[more]

BLAST of Cucsa.337760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFH5_CUCSA	2.2e-74	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G820480 PE=4 SV=1	[more]
A0A0A0L3J8_CUCSA	7.3e-17	43.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G431960 PE=4 SV=1	[more]
W9R567_9ROSA	4.8e-16	42.06	Uncharacterized protein OS=Morus notabilis GN=L484_013937 PE=4 SV=1	[more]
A0A068ULZ1_COFCA	1.4e-12	48.86	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028988001 PE=4 SV=1	[more]
A0A061EVV1_THECC	1.4e-12	51.09	VQ motif-containing protein, putative OS=Theobroma cacao GN=TCM_024241 PE=4 SV=1	[more]

BLAST of Cucsa.337760 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G56710.1	3.5e-10	49.32	sigma factor binding protein 1	[more]
AT2G41180.1	8.6e-09	62.26	VQ motif-containing protein	[more]

BLAST of Cucsa.337760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778685199\|ref\|XP_011652185.1\|	3.2e-74	100.00	PREDICTED: uncharacterized protein LOC105434994 [Cucumis sativus]	[more]
gi\|659085802\|ref\|XP_008443611.1\|	4.1e-61	87.50	PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo]	[more]
gi\|778694743\|ref\|XP_011653858.1\|	1.1e-16	43.18	PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis sativus]	[more]
gi\|659111355\|ref\|XP_008455708.1\|	1.1e-16	44.25	PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis melo]	[more]
gi\|703074146\|ref\|XP_010089743.1\|	6.8e-16	42.06	hypothetical protein L484_013937 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0051091	positive regulation of sequence-specific DNA binding transcription factor activity
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.337760.1	Cucsa.337760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 39..64 score: 1.3
None	No IPR available	PANTHER	PTHR33624	FAMILY NOT NAMED	coord: 31..133 score: 2.1
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC-RELATED	coord: 31..133 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.337760	Cla002876	Watermelon (97103) v1	cgywmB609
Cucsa.337760	Csa3G820480	Cucumber (Chinese Long) v2	cgycuB478
Cucsa.337760	MELO3C009755	Melon (DHL92) v3.5.1	cgymeB558
Cucsa.337760	ClCG10G016220	Watermelon (Charleston Gray)	cgywcgB579
Cucsa.337760	CSPI03G37800	Wild cucumber (PI 183967)	cgycpiB504
Cucsa.337760	CmaCh03G001350	Cucurbita maxima (Rimu)	cgycmaB0938
Cucsa.337760	CmaCh06G000260	Cucurbita maxima (Rimu)	cgycmaB0942
Cucsa.337760	CmoCh06G000220	Cucurbita moschata (Rifu)	cgycmoB0942
Cucsa.337760	CmoCh03G001590	Cucurbita moschata (Rifu)	cgycmoB0937
Cucsa.337760	Lsi01G017790	Bottle gourd (USVL1VR-Ls)	cgylsiB546
Cucsa.337760	Lsi03G016120	Bottle gourd (USVL1VR-Ls)	cgylsiB551
Cucsa.337760	Cp4.1LG08g13390	Cucurbita pepo (Zucchini)	cgycpeB0901
Cucsa.337760	MELO3C009755.2	Melon (DHL92) v3.6.1	cgymedB559
Cucsa.337760	CsaV3_3G040160	Cucumber (Chinese Long) v3	cgycucB523
Cucsa.337760	Cla97C10G199120	Watermelon (97103) v2	cgywmbB582
Cucsa.337760	Bhi11G002315	Wax gourd	cgywgoB677
Cucsa.337760	Bhi03G002023	Wax gourd	cgywgoB687
Cucsa.337760	Carg01295	Silver-seed gourd	carcgyB0199

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.337760	Cucurbita pepo (Zucchini)	cgycpeB0888
Cucsa.337760	Cucurbita pepo (Zucchini)	cgycpeB0900
Cucsa.337760	Silver-seed gourd	carcgyB0198
Cucsa.337760	Silver-seed gourd	carcgyB0296
Cucsa.337760	Wax gourd	cgywgoB673
Cucsa.337760	Cucurbita maxima (Rimu)	cgycmaB0926
Cucsa.337760	Cucurbita maxima (Rimu)	cgycmaB0943
Cucsa.337760	Cucurbita moschata (Rifu)	cgycmoB0926
Cucsa.337760	Cucurbita moschata (Rifu)	cgycmoB0943