Lsi01G017790.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G017790.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Sigma factor binding protein 1
Location	chr01 : 17030559 .. 17031056 (+)
Sequence length	498

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCCGGCGCCGGCACCGGAAACAACCACAGAATCCTCGATGCCGTTCACCGGTGTAAACCCACAAAGAAAACGAAGCAACCCAACAAAAAGAAACCCATCAAAGTTGTGTACATATCTAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCCGACCCCTCTAAATTCCCCTCCTCCGCCGTCTTCGGCGGCGCCGCCTCCTCCGACCTCCTCCACAACACCGCATCCGGCCGCGACGACGACGACGACGACGGTGCTAGTAATCTTATGATGAATAGTAACAACCCTTCACTTGCTGTTGAGCTGCCGGAGGAGGACGACTTTCTTGGTAGTTTTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTAATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCGACGACGGCGGTTGTCTATGAATCTTATGCAAGGTGA

mRNA sequence

ATGGACGCCGGCGCCGGCACCGGAAACAACCACAGAATCCTCGATGCCGTTCACCGGTGTAAACCCACAAAGAAAACGAAGCAACCCAACAAAAAGAAACCCATCAAAGTTGTGTACATATCTAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCCGACCCCTCTAAATTCCCCTCCTCCGCCGTCTTCGGCGGCGCCGCCTCCTCCGACCTCCTCCACAACACCGCATCCGGCCGCGACGACGACGACGACGACGGTGCTAGTAATCTTATGATGAATAGTAACAACCCTTCACTTGCTGTTGAGCTGCCGGAGGAGGACGACTTTCTTGGTAGTTTTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTAATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCGACGACGGCGGTTGTCTATGAATCTTATGCAAGGTGA

Coding sequence (CDS)

ATGGACGCCGGCGCCGGCACCGGAAACAACCACAGAATCCTCGATGCCGTTCACCGGTGTAAACCCACAAAGAAAACGAAGCAACCCAACAAAAAGAAACCCATCAAAGTTGTGTACATATCTAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCCGACCCCTCTAAATTCCCCTCCTCCGCCGTCTTCGGCGGCGCCGCCTCCTCCGACCTCCTCCACAACACCGCATCCGGCCGCGACGACGACGACGACGACGGTGCTAGTAATCTTATGATGAATAGTAACAACCCTTCACTTGCTGTTGAGCTGCCGGAGGAGGACGACTTTCTTGGTAGTTTTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTAATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCGACGACGGCGGTTGTCTATGAATCTTATGCAAGGTGA

Protein sequence

MDAGAGTGNNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR

Homology

[Close]

BLAST of Lsi01G017790.1 vs. Swiss-Prot
Match: SIB1_ARATH (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.6e-08
Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = 1


Query: 17  VHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFP 76
           V R  P +K K  +  KPIKV YISNPM+VQT AS+F  LVQELTGQDA D  P+P   P
Sbjct: 22  VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSP 81

Query: 77  SSAVFGGAASSD-----LLHNTASGRDDDD 100
           SS     +  ++     +LH    G  D D
Sbjct: 82  SSDDHNLSPPAENLAPRVLHQEPFGERDSD 111

[Close]

BLAST of Lsi01G017790.1 vs. Swiss-Prot
Match: SIB2_ARATH (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=SIB2 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-07
Identity = 34/70 (48.57%), Postives = 41/70 (58.57%), Query Frame = 1


Query: 9  NNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFP 68
          N  +   +  R  P +K K     KPIKV YISNPM+V+T  S+F  LVQELTGQDA   
Sbjct: 11 NQRKSSSSPTRIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADL 70

Query: 69 DPSKFPSSAV 79
           PS    +AV
Sbjct: 71 PPSPTTFTAV 80

[Close]

BLAST of Lsi01G017790.1 vs. TrEMBL
Match: A0A0A0L3J8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.4e-56
Identity = 125/167 (74.85%), Postives = 137/167 (82.04%), Query Frame = 1


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAG  TG++HR LDAV+R KPTKKTKQP    KKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV  GAAS+D L+NT S     +DDGA+NL++NSNN SL  E
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTIS--SGGEDDGATNLIVNSNNSSLVDE 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFP PVIGNFSGLLP A   AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLP-APVAAVVYESNAR 164

[Close]

BLAST of Lsi01G017790.1 vs. TrEMBL
Match: W9R567_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013937 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.1e-16
Identity = 67/160 (41.88%), Postives = 94/160 (58.75%), Query Frame = 1


Query: 9   NNHRILDAVHRCKPTKKTKQPNKK---KPIKVVYISNPMKVQTSASEFMALVQELTGQDA 68
           +N  +L ++ R KPTKKT   NK    +P+KVVYISNPMK++TSASEF ALVQELTGQDA
Sbjct: 3   SNSNVLTSLQR-KPTKKTSANNKTKKTRPVKVVYISNPMKIKTSASEFRALVQELTGQDA 62

Query: 69  DFPDPSKFPSSAVFGGAASSDLLHNTASGRD--DDDDDGASNLMMNSNNPSLAVELPEED 128
           +FPDP+KF ++    G     +      G D  +  + GA+     SNN S         
Sbjct: 63  EFPDPTKFLAT---NGEDQVGVDSTVKIGGDHSNSQEQGAT----ESNNSSTTTT----- 122

Query: 129 DFLGSFYNDFEDLIFPPPVIGNF-SGLLPAAATTAVVYES 163
               S Y   +D +F P ++ +F +G+ P++AT +V Y+S
Sbjct: 123 ----SRYEALDDDVFMPQMMESFEAGIFPSSATASVWYDS 145

[Close]

BLAST of Lsi01G017790.1 vs. TrEMBL
Match: A0A068ULZ1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028988001 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 59/140 (42.14%), Postives = 82/140 (58.57%), Query Frame = 1


Query: 14  LDAVHRCKPTKKTKQP-NKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSK 73
           +D +      K  KQP NKKKP+KVVYISNPMKV+TSASEF ALVQELTGQDAD PDP+K
Sbjct: 1   MDKMLSVNQKKTNKQPKNKKKPVKVVYISNPMKVKTSASEFRALVQELTGQDADMPDPTK 60

Query: 74  FPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVELPEEDD--FLGSFY 133
           +  +   GG+   ++   +   +  +DD      ++   N     E+PE  D    G+  
Sbjct: 61  YSDTDSVGGSCQEEV---STELKTMEDDQVVQQPLVQPKN-----EMPERADCNIYGTCD 120

Query: 134 NDFEDLIFPPPVIGNFSGLL 151
            + +DL++ P    +F GL+
Sbjct: 121 REDDDLLYMPE---SFPGLV 129

[Close]

BLAST of Lsi01G017790.1 vs. TrEMBL
Match: A0A0A0LFH5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G820480 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 52/118 (44.07%), Postives = 71/118 (60.17%), Query Frame = 1


Query: 21  KPTKKTKQ-PNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVF 80
           K T+K K     K+P+KVVYISNPM+V TSASEF ALVQELTG+DA+FPDP+KF      
Sbjct: 19  KTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYP---- 78

Query: 81  GGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLI 138
             A+S ++++      DDD +          +   L ++   +DDFL S Y   ED++
Sbjct: 79  --ASSCEIMN------DDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESLEDIL 124

[Close]

BLAST of Lsi01G017790.1 vs. TrEMBL
Match: I1JN53_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G127800 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-12
Identity = 71/167 (42.51%), Postives = 89/167 (53.29%), Query Frame = 1


Query: 16  AVHRCKPTKKTKQPNKKK---PIKVVYISNPMKVQTSASEFMALVQELTGQDADF-PDPS 75
           +V +  PTKKTK P KK    P+KVVYISNPMK++TSASEF ALVQELTGQDA+  PDP+
Sbjct: 11  SVQQRTPTKKTK-PKKKNTPHPVKVVYISNPMKIKTSASEFRALVQELTGQDAESPPDPT 70

Query: 76  KFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNL---------MMNSNNPSLAVELPEE 135
           +F             L+H  +S   D  ++   N+          +   N SLA    EE
Sbjct: 71  RF-----------HGLIHPDSSSSVDHIEEEEDNVHSVNCVVPPAVADENMSLAGCYEEE 130

Query: 136 DDFLGS---FYNDFEDL----IFPPPVIGNFSGLLPAAATTAVVYES 163
                S     N+FE L    +F P +I N S LLPA    +V YES
Sbjct: 131 QQQQPSSMESINNFEPLDDDDVFTPQMIENISALLPA----SVFYES 161

[Close]

BLAST of Lsi01G017790.1 vs. TAIR10
Match: AT3G56710.1 (AT3G56710.1 sigma factor binding protein 1)

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-09
Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = 1


Query: 17  VHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFP 76
           V R  P +K K  +  KPIKV YISNPM+VQT AS+F  LVQELTGQDA D  P+P   P
Sbjct: 22  VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSP 81

Query: 77  SSAVFGGAASSD-----LLHNTASGRDDDD 100
           SS     +  ++     +LH    G  D D
Sbjct: 82  SSDDHNLSPPAENLAPRVLHQEPFGERDSD 111

[Close]

BLAST of Lsi01G017790.1 vs. TAIR10
Match: AT2G41180.1 (AT2G41180.1 VQ motif-containing protein)

HSP 1 Score: 57.4 bits (137), Expect = 9.8e-09
Identity = 34/70 (48.57%), Postives = 41/70 (58.57%), Query Frame = 1


Query: 9  NNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFP 68
          N  +   +  R  P +K K     KPIKV YISNPM+V+T  S+F  LVQELTGQDA   
Sbjct: 11 NQRKSSSSPTRIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADL 70

Query: 69 DPSKFPSSAV 79
           PS    +AV
Sbjct: 71 PPSPTTFTAV 80

[Close]

BLAST of Lsi01G017790.1 vs. NCBI nr
Match: gi|659111355|ref|XP_008455708.1| (PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis melo])

HSP 1 Score: 233.0 bits (593), Expect = 3.7e-58
Identity = 128/167 (76.65%), Postives = 138/167 (82.63%), Query Frame = 1


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNKK--KPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGA TGNN R LDAV+R KP KKTKQ NKK  KPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV   AAS+D L+NT SG    DDDGASNL++NSNNPSL  +
Sbjct: 80  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSG--GGDDDGASNLIVNSNNPSLVDD 139

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Sbjct: 140 VPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP-GPMAAVVYESNAR 183

[Close]

BLAST of Lsi01G017790.1 vs. NCBI nr
Match: gi|778694743|ref|XP_011653858.1| (PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 2.0e-56
Identity = 125/167 (74.85%), Postives = 137/167 (82.04%), Query Frame = 1


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAG  TG++HR LDAV+R KPTKKTKQP    KKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV  GAAS+D L+NT S     +DDGA+NL++NSNN SL  E
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTIS--SGGEDDGATNLIVNSNNSSLVDE 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFP PVIGNFSGLLP A   AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLP-APVAAVVYESNAR 164

[Close]

BLAST of Lsi01G017790.1 vs. NCBI nr
Match: gi|703074146|ref|XP_010089743.1| (hypothetical protein L484_013937 [Morus notabilis])

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-15
Identity = 67/160 (41.88%), Postives = 94/160 (58.75%), Query Frame = 1


Query: 9   NNHRILDAVHRCKPTKKTKQPNKK---KPIKVVYISNPMKVQTSASEFMALVQELTGQDA 68
           +N  +L ++ R KPTKKT   NK    +P+KVVYISNPMK++TSASEF ALVQELTGQDA
Sbjct: 3   SNSNVLTSLQR-KPTKKTSANNKTKKTRPVKVVYISNPMKIKTSASEFRALVQELTGQDA 62

Query: 69  DFPDPSKFPSSAVFGGAASSDLLHNTASGRD--DDDDDGASNLMMNSNNPSLAVELPEED 128
           +FPDP+KF ++    G     +      G D  +  + GA+     SNN S         
Sbjct: 63  EFPDPTKFLAT---NGEDQVGVDSTVKIGGDHSNSQEQGAT----ESNNSSTTTT----- 122

Query: 129 DFLGSFYNDFEDLIFPPPVIGNF-SGLLPAAATTAVVYES 163
               S Y   +D +F P ++ +F +G+ P++AT +V Y+S
Sbjct: 123 ----SRYEALDDDVFMPQMMESFEAGIFPSSATASVWYDS 145

[Close]

BLAST of Lsi01G017790.1 vs. NCBI nr
Match: gi|661886847|emb|CDP09565.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 59/140 (42.14%), Postives = 82/140 (58.57%), Query Frame = 1


Query: 14  LDAVHRCKPTKKTKQP-NKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSK 73
           +D +      K  KQP NKKKP+KVVYISNPMKV+TSASEF ALVQELTGQDAD PDP+K
Sbjct: 1   MDKMLSVNQKKTNKQPKNKKKPVKVVYISNPMKVKTSASEFRALVQELTGQDADMPDPTK 60

Query: 74  FPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVELPEEDD--FLGSFY 133
           +  +   GG+   ++   +   +  +DD      ++   N     E+PE  D    G+  
Sbjct: 61  YSDTDSVGGSCQEEV---STELKTMEDDQVVQQPLVQPKN-----EMPERADCNIYGTCD 120

Query: 134 NDFEDLIFPPPVIGNFSGLL 151
            + +DL++ P    +F GL+
Sbjct: 121 REDDDLLYMPE---SFPGLV 129

[Close]

BLAST of Lsi01G017790.1 vs. NCBI nr
Match: gi|778685199|ref|XP_011652185.1| (PREDICTED: uncharacterized protein LOC105434994 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 52/118 (44.07%), Postives = 71/118 (60.17%), Query Frame = 1


Query: 21  KPTKKTKQ-PNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVF 80
           K T+K K     K+P+KVVYISNPM+V TSASEF ALVQELTG+DA+FPDP+KF      
Sbjct: 19  KTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYP---- 78

Query: 81  GGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLI 138
             A+S ++++      DDD +          +   L ++   +DDFL S Y   ED++
Sbjct: 79  --ASSCEIMN------DDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESLEDIL 124

The following BLAST results are available for this feature:

BLAST of Lsi01G017790.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SIB1_ARATH	4.6e-08	47.78	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE...	[more]
SIB2_ARATH	1.7e-07	48.57	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=SIB2 PE...	[more]

BLAST of Lsi01G017790.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3J8_CUCSA	1.4e-56	74.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G431960 PE=4 SV=1	[more]
W9R567_9ROSA	7.1e-16	41.88	Uncharacterized protein OS=Morus notabilis GN=L484_013937 PE=4 SV=1	[more]
A0A068ULZ1_COFCA	1.3e-14	42.14	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028988001 PE=4 SV=1	[more]
A0A0A0LFH5_CUCSA	1.2e-12	44.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G820480 PE=4 SV=1	[more]
I1JN53_SOYBN	1.6e-12	42.51	Uncharacterized protein OS=Glycine max GN=GLYMA_03G127800 PE=4 SV=1	[more]

BLAST of Lsi01G017790.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G56710.1	2.6e-09	47.78	sigma factor binding protein 1	[more]
AT2G41180.1	9.8e-09	48.57	VQ motif-containing protein	[more]

BLAST of Lsi01G017790.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111355\|ref\|XP_008455708.1\|	3.7e-58	76.65	PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis melo]	[more]
gi\|778694743\|ref\|XP_011653858.1\|	2.0e-56	74.85	PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis sativus]	[more]
gi\|703074146\|ref\|XP_010089743.1\|	1.0e-15	41.88	hypothetical protein L484_013937 [Morus notabilis]	[more]
gi\|661886847\|emb\|CDP09565.1\|	1.9e-14	42.14	unnamed protein product [Coffea canephora]	[more]
gi\|778685199\|ref\|XP_011652185.1\|	1.8e-12	44.07	PREDICTED: uncharacterized protein LOC105434994 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi01G017790	Lsi01G017790	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi01G017790.1.CDS.1	Lsi01G017790.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi01G017790.1	Lsi01G017790.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 40..65 score: 3.6
None	No IPR available	PANTHER	PTHR33624	FAMILY NOT NAMED	coord: 21..165 score: 1.3
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC-RELATED	coord: 21..165 score: 1.3