Lsi01G004920 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G004920
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Tapetum determinant 1
Location	chr01 : 4054551 .. 4055240 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGTGGTGCTTTTCACAGATTCTGCTTCTGTTTTCTCCTCACATGTTTTCTTGGTAATGGTAACTCTTCTTTTATTTGATCTATTATCTATAATCTATCATGCCTCTGCATCTTCTTGCCCATCTGATTTACATTTACACCCACCACTTTCTTTTTTTTCTTTCTTTTTTGGTGGAATTCAGAATTCAAGTTGGTTCATTTGAGAGTTGTTCAGGTAGCTGCAAGAGAGAAAAGAAATGGGATTTCTGGGATGTCGCTTCAATCTTCTAATAGTGGTAAGAAACTCATTCTTACTACAGAAATCAAAATGTTGTTCTTTACATATATACCATGGATCTCATTCTAAATAGGTAAAGAGATGAATCGCATTGGTTCAGAATGTTCAAAAGACGATGTCATTATATTTCAAGGCCAAACAACTCCACTTCCGGATGGGATTCCAACATATATGGTTCAGATCTTGAATTCATGTGCTTCAGACTGCAGCATCTCCAACATTCACGTCAAATGTGAGTGGTTCAGCTCAGCCAGATTGGTGAATCCAAGAATTTTTAGGCGAGTCACTTATGATGACTGCCTTGTCAACGATGGCCAAGCTCTTGGTCCTGGTCAAACTCTGTCTTTTCAATATGCTAATACTTTCCCTTACCCTCTTTCTGTAGCTTCTGTAACTTGTTCTTCTTAA

mRNA sequence

ATGAAAGGTGGTGCTTTTCACAGATTCTGCTTCTGTTTTCTCCTCACATGTTTTCTTGGTAATGAATTCAAGTTGGTTCATTTGAGAGTTGTTCAGGTAGCTGCAAGAGAGAAAAGAAATGGGATTTCTGGGATGTCGCTTCAATCTTCTAATAGTGGTAAAGAGATGAATCGCATTGGTTCAGAATGTTCAAAAGACGATGTCATTATATTTCAAGGCCAAACAACTCCACTTCCGGATGGGATTCCAACATATATGGTTCAGATCTTGAATTCATGTGCTTCAGACTGCAGCATCTCCAACATTCACGTCAAATGTGAGTGGTTCAGCTCAGCCAGATTGGTGAATCCAAGAATTTTTAGGCGAGTCACTTATGATGACTGCCTTGTCAACGATGGCCAAGCTCTTGGTCCTGGTCAAACTCTGTCTTTTCAATATGCTAATACTTTCCCTTACCCTCTTTCTGTAGCTTCTGTAACTTGTTCTTCTTAA

Coding sequence (CDS)

ATGAAAGGTGGTGCTTTTCACAGATTCTGCTTCTGTTTTCTCCTCACATGTTTTCTTGGTAATGAATTCAAGTTGGTTCATTTGAGAGTTGTTCAGGTAGCTGCAAGAGAGAAAAGAAATGGGATTTCTGGGATGTCGCTTCAATCTTCTAATAGTGGTAAAGAGATGAATCGCATTGGTTCAGAATGTTCAAAAGACGATGTCATTATATTTCAAGGCCAAACAACTCCACTTCCGGATGGGATTCCAACATATATGGTTCAGATCTTGAATTCATGTGCTTCAGACTGCAGCATCTCCAACATTCACGTCAAATGTGAGTGGTTCAGCTCAGCCAGATTGGTGAATCCAAGAATTTTTAGGCGAGTCACTTATGATGACTGCCTTGTCAACGATGGCCAAGCTCTTGGTCCTGGTCAAACTCTGTCTTTTCAATATGCTAATACTTTCCCTTACCCTCTTTCTGTAGCTTCTGTAACTTGTTCTTCTTAA

Protein sequence

MKGGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCSS

Homology

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BLAST of Lsi01G004920 vs. Swiss-Prot
Match: TDL1_ARATH (TPD1 protein homolog 1 OS=Arabidopsis thaliana GN=TDL1 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-46
Identity = 84/129 (65.12%), Postives = 101/129 (78.29%), Query Frame = 1


Query: 33  VAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNS 92
           V+  E R  +S   L S + G   NRIG +CSKDD+++FQG T PLP G+P+Y V+I NS
Sbjct: 50  VSINENRTALSRKLLLSPDIGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNS 109

Query: 93  CASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPY 152
           C SDC+I+ IHV C WFSS RLVNPR+FRR+ YDDCLVNDGQ LGPGQ+LSFQYAN+F Y
Sbjct: 110 CVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSY 169

Query: 153 PLSVASVTC 162
           PLSVASV+C
Sbjct: 170 PLSVASVSC 178

[Close]

BLAST of Lsi01G004920 vs. Swiss-Prot
Match: TPD1_ARATH (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana GN=TPD1 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.5e-35
Identity = 70/123 (56.91%), Postives = 87/123 (70.73%), Query Frame = 1


Query: 45  MSLQSSNSGK-----EMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSI 104
           M L S  +GK     E  RIG +C   D+++ Q  T P+P+GIP YMV+I N C S C I
Sbjct: 54  MLLLSPGTGKTERSVEPERIGEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCII 113

Query: 105 SNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASV 163
           S IH+ C WFSSA+L+NPR+F+R+ YDDCLVN+G+ L  G TLSF YANTFPY LSVA V
Sbjct: 114 SRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFV 173

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BLAST of Lsi01G004920 vs. Swiss-Prot
Match: TDL1A_ORYSJ (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica GN=TDL1A PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.9e-30
Identity = 60/127 (47.24%), Postives = 84/127 (66.14%), Query Frame = 1


Query: 42  ISGMSLQSSNSGKEMNRIGSECS-KDDVIIFQGQTTPLPDGIPTYMVQILNSCAS----- 101
           +SG        G    R+   C+  DD+ I+QG+ TPLP G+P Y V ++N CA      
Sbjct: 93  VSGSGGGGGGDGVRTRRVDDGCAGADDIAIYQGRATPLPSGVPAYTVDVMNRCAGGGGGD 152

Query: 102 -DCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPL 161
            +C+I+ IHV+C WFSS  LV+PR+FRR+ +DDCL+NDG+ L  G+T+SF+Y N+FPY L
Sbjct: 153 EECAIAGIHVRCGWFSSVSLVDPRVFRRLGHDDCLLNDGRPLLAGETVSFEYTNSFPYKL 212

[Close]

BLAST of Lsi01G004920 vs. Swiss-Prot
Match: TDL1B_ORYSJ (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica GN=TDL1B PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.0e-24
Identity = 52/115 (45.22%), Postives = 80/115 (69.57%), Query Frame = 1


Query: 49  SSNSGKE-MNRIGSE-CSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKC 108
           S N G+  M R+  + CS+ +V+++Q     LP GIPTY V+I+N C + C++ ++H+ C
Sbjct: 55  SPNGGRHWMQRMQPDSCSEQNVVVYQNNAEHLPSGIPTYSVEIINVCTA-CTVYDVHISC 114

Query: 109 EWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTC 162
             F+SA LV+P  F+R+ ++DCLV  G  LGP + +SFQY+N+F YPL+VA+V C
Sbjct: 115 GEFASAELVDPSQFQRIGFNDCLVKGGGRLGPSEAVSFQYSNSFAYPLAVANVAC 168

[Close]

BLAST of Lsi01G004920 vs. Swiss-Prot
Match: Y1583_ARATH (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.2e-07
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 85  YMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYD--DCLVNDGQALGPGQTL 144
           + V+++N C   C I N+ +KC+ F  + LV+P   R ++    +C+VNDG  L P QTL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 145 SFQYANTFPYPL 155
           SF Y+NT  + L
Sbjct: 108 SFNYSNTHQFAL 117

[Close]

BLAST of Lsi01G004920 vs. TrEMBL
Match: A0A0A0KL27_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511090 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.1e-76
Identity = 140/161 (86.96%), Postives = 149/161 (92.55%), Query Frame = 1


Query: 3   GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSE 62
           GGAFHRFC  FLLT FLGNEFKLVHLRV+Q AARE RNGIS MSLQSSNSGKEMNRIGS 
Sbjct: 4   GGAFHRFCLWFLLTIFLGNEFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSR 63

Query: 63  CSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRR 122
           C+KDD+IIFQG  TPLP GIPTY+VQILNSCASDCSISNIHVKC WFSSARLVNPRIF+R
Sbjct: 64  CAKDDIIIFQGPATPLPGGIPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKR 123

Query: 123 VTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCSS 164
           V+YDDCLVNDG+ALGPG+TLSFQYANTFPYPLSV+S TCSS
Sbjct: 124 VSYDDCLVNDGRALGPGRTLSFQYANTFPYPLSVSSATCSS 164

[Close]

BLAST of Lsi01G004920 vs. TrEMBL
Match: A0A078GK28_BRANA (BnaA05g18070D protein OS=Brassica napus GN=BnaA05g18070D PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.9e-45
Identity = 85/125 (68.00%), Postives = 102/125 (81.60%), Query Frame = 1


Query: 37  EKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASD 96
           E RNG+S   L S + G    RIG ECSKDDV++FQG T PLP+G+P + V+ILN+CASD
Sbjct: 51  ENRNGLSRKLLLSPDIGDGTKRIGEECSKDDVVVFQGSTVPLPNGVPAFTVEILNACASD 110

Query: 97  CSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSV 156
           CS++ IHV C WFSS RLVNPR+FRR++YDDCLVNDGQ L PGQTLSFQYAN+F YPLSV
Sbjct: 111 CSVAEIHVSCGWFSSVRLVNPRVFRRLSYDDCLVNDGQPLAPGQTLSFQYANSFAYPLSV 170

Query: 157 ASVTC 162
           +SV+C
Sbjct: 171 SSVSC 175

[Close]

BLAST of Lsi01G004920 vs. TrEMBL
Match: M4D124_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.9e-45
Identity = 85/125 (68.00%), Postives = 102/125 (81.60%), Query Frame = 1


Query: 37  EKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASD 96
           E RNG+S   L S + G    RIG ECSKDDV++FQG T PLP+G+P + V+ILN+CASD
Sbjct: 51  ENRNGLSRKLLLSPDIGDGTKRIGEECSKDDVVVFQGSTVPLPNGVPAFTVEILNACASD 110

Query: 97  CSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSV 156
           CS++ IHV C WFSS RLVNPR+FRR++YDDCLVNDGQ L PGQTLSFQYAN+F YPLSV
Sbjct: 111 CSVAEIHVSCGWFSSVRLVNPRVFRRLSYDDCLVNDGQPLAPGQTLSFQYANSFAYPLSV 170

Query: 157 ASVTC 162
           +SV+C
Sbjct: 171 SSVSC 175

[Close]

BLAST of Lsi01G004920 vs. TrEMBL
Match: D7KHL8_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_473449 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.6e-44
Identity = 83/125 (66.40%), Postives = 98/125 (78.40%), Query Frame = 1


Query: 37  EKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASD 96
           E R  +    L S + G   NRIG +CSKDD+++FQG T PLP G+P+Y V+I NSC SD
Sbjct: 39  ENRTALPRKLLLSPDIGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSD 98

Query: 97  CSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSV 156
           C+I+ IHV C WFSS RLVNPR+FRR+ YDDCLVNDGQ LGPGQTLSFQYAN+F YPLSV
Sbjct: 99  CNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQTLSFQYANSFSYPLSV 158

Query: 157 ASVTC 162
           ASV+C
Sbjct: 159 ASVSC 163

[Close]

BLAST of Lsi01G004920 vs. TrEMBL
Match: F6HCV9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00170 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.6e-44
Identity = 91/159 (57.23%), Postives = 116/159 (72.96%), Query Frame = 1


Query: 4   GAFHRFCFCFLLTCFLGNEFKLVHLRVVQV-AAREKRNGISGMSLQSSNSGKEMNRIGSE 63
           GA  + C+  LL     +E K+  + + ++  ++E   G     L S + G  MNRIG  
Sbjct: 16  GASTQLCYISLLELSSSSE-KIGDIGIKKLFLSKENSTGFVRKLLASPDEGGAMNRIGGT 75

Query: 64  CSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRR 123
           CSKD+++IFQG TTPLP GIPTY VQILN C + CSISNIHV+C WFSSARL+NPR+FRR
Sbjct: 76  CSKDNIVIFQGPTTPLPSGIPTYTVQILNVCVAGCSISNIHVRCGWFSSARLINPRLFRR 135

Query: 124 VTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTC 162
           + +DDCLVN+G ALGPG++LSFQYAN+F YPLSV SV+C
Sbjct: 136 IFFDDCLVNNGDALGPGESLSFQYANSFRYPLSVLSVSC 173

[Close]

BLAST of Lsi01G004920 vs. TAIR10
Match: AT1G32583.1 (AT1G32583.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 187.6 bits (475), Expect = 6.2e-48
Identity = 84/129 (65.12%), Postives = 101/129 (78.29%), Query Frame = 1


Query: 33  VAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNS 92
           V+  E R  +S   L S + G   NRIG +CSKDD+++FQG T PLP G+P+Y V+I NS
Sbjct: 50  VSINENRTALSRKLLLSPDIGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNS 109

Query: 93  CASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPY 152
           C SDC+I+ IHV C WFSS RLVNPR+FRR+ YDDCLVNDGQ LGPGQ+LSFQYAN+F Y
Sbjct: 110 CVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSY 169

Query: 153 PLSVASVTC 162
           PLSVASV+C
Sbjct: 170 PLSVASVSC 178

[Close]

BLAST of Lsi01G004920 vs. TAIR10
Match: AT4G24972.1 (AT4G24972.1 tapetum determinant 1)

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-36
Identity = 70/123 (56.91%), Postives = 87/123 (70.73%), Query Frame = 1


Query: 45  MSLQSSNSGK-----EMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSI 104
           M L S  +GK     E  RIG +C   D+++ Q  T P+P+GIP YMV+I N C S C I
Sbjct: 54  MLLLSPGTGKTERSVEPERIGEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCII 113

Query: 105 SNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASV 163
           S IH+ C WFSSA+L+NPR+F+R+ YDDCLVN+G+ L  G TLSF YANTFPY LSVA V
Sbjct: 114 SRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFV 173

[Close]

BLAST of Lsi01G004920 vs. TAIR10
Match: AT1G05835.1 (AT1G05835.1 PHD finger protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-08
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 85  YMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYD--DCLVNDGQALGPGQTL 144
           + V+++N C   C I N+ +KC+ F  + LV+P   R ++    +C+VNDG  L P QTL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 145 SFQYANTFPYPL 155
           SF Y+NT  + L
Sbjct: 108 SFNYSNTHQFAL 117

[Close]

BLAST of Lsi01G004920 vs. NCBI nr
Match: gi|659079118|ref|XP_008440085.1| (PREDICTED: uncharacterized protein LOC103484668 isoform X1 [Cucumis melo])

HSP 1 Score: 294.3 bits (752), Expect = 1.3e-76
Identity = 140/160 (87.50%), Postives = 148/160 (92.50%), Query Frame = 1


Query: 3   GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSE 62
           GGAFHRFC CFLL  FLGNEFKLVHLRV+Q AARE RNGIS MSLQSSNSGKEMNRIGSE
Sbjct: 4   GGAFHRFCLCFLLAIFLGNEFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSE 63

Query: 63  CSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRR 122
           CSK D+IIFQG  TPLP GIPTY+VQILNSCASDCSISNIHVKC WFSSARLVNPRIF+R
Sbjct: 64  CSKKDIIIFQGPATPLPGGIPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKR 123

Query: 123 VTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCS 163
           V+YDDCLVNDG+ALGPG+TLSFQYANTFPYPLSV+S TCS
Sbjct: 124 VSYDDCLVNDGRALGPGRTLSFQYANTFPYPLSVSSATCS 163

[Close]

BLAST of Lsi01G004920 vs. NCBI nr
Match: gi|449434404|ref|XP_004134986.1| (PREDICTED: TPD1 protein homolog 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 293.1 bits (749), Expect = 3.0e-76
Identity = 140/161 (86.96%), Postives = 149/161 (92.55%), Query Frame = 1


Query: 3   GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSE 62
           GGAFHRFC  FLLT FLGNEFKLVHLRV+Q AARE RNGIS MSLQSSNSGKEMNRIGS 
Sbjct: 4   GGAFHRFCLWFLLTIFLGNEFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSR 63

Query: 63  CSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRR 122
           C+KDD+IIFQG  TPLP GIPTY+VQILNSCASDCSISNIHVKC WFSSARLVNPRIF+R
Sbjct: 64  CAKDDIIIFQGPATPLPGGIPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKR 123

Query: 123 VTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCSS 164
           V+YDDCLVNDG+ALGPG+TLSFQYANTFPYPLSV+S TCSS
Sbjct: 124 VSYDDCLVNDGRALGPGRTLSFQYANTFPYPLSVSSATCSS 164

[Close]

BLAST of Lsi01G004920 vs. NCBI nr
Match: gi|659079120|ref|XP_008440086.1| (PREDICTED: uncharacterized protein LOC103484668 isoform X2 [Cucumis melo])

HSP 1 Score: 284.3 bits (726), Expect = 1.4e-73
Identity = 138/160 (86.25%), Postives = 146/160 (91.25%), Query Frame = 1


Query: 3   GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSE 62
           GGAFHRFC CFLL  FL  EFKLVHLRV+Q AARE RNGIS MSLQSSNSGKEMNRIGSE
Sbjct: 4   GGAFHRFCLCFLLAIFL--EFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSE 63

Query: 63  CSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRR 122
           CSK D+IIFQG  TPLP GIPTY+VQILNSCASDCSISNIHVKC WFSSARLVNPRIF+R
Sbjct: 64  CSKKDIIIFQGPATPLPGGIPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKR 123

Query: 123 VTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCS 163
           V+YDDCLVNDG+ALGPG+TLSFQYANTFPYPLSV+S TCS
Sbjct: 124 VSYDDCLVNDGRALGPGRTLSFQYANTFPYPLSVSSATCS 161

[Close]

BLAST of Lsi01G004920 vs. NCBI nr
Match: gi|778720136|ref|XP_011658115.1| (PREDICTED: TPD1 protein homolog 1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 283.1 bits (723), Expect = 3.1e-73
Identity = 138/161 (85.71%), Postives = 147/161 (91.30%), Query Frame = 1


Query: 3   GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSE 62
           GGAFHRFC  FLLT FL  EFKLVHLRV+Q AARE RNGIS MSLQSSNSGKEMNRIGS 
Sbjct: 4   GGAFHRFCLWFLLTIFL--EFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSR 63

Query: 63  CSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRR 122
           C+KDD+IIFQG  TPLP GIPTY+VQILNSCASDCSISNIHVKC WFSSARLVNPRIF+R
Sbjct: 64  CAKDDIIIFQGPATPLPGGIPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKR 123

Query: 123 VTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCSS 164
           V+YDDCLVNDG+ALGPG+TLSFQYANTFPYPLSV+S TCSS
Sbjct: 124 VSYDDCLVNDGRALGPGRTLSFQYANTFPYPLSVSSATCSS 162

[Close]

BLAST of Lsi01G004920 vs. NCBI nr
Match: gi|657958863|ref|XP_008370972.1| (PREDICTED: uncharacterized protein LOC103434408 [Malus domestica])

HSP 1 Score: 192.6 bits (488), Expect = 5.4e-46
Identity = 92/136 (67.65%), Postives = 107/136 (78.68%), Query Frame = 1


Query: 32  QVAAREKRNGISGMSLQSSNSGKE------MNRIGSECSKDDVIIFQGQTTPLPDGIPTY 91
           QV + E      G  LQ S+ G +      MNRIG+ CSKDD++IFQGQT PLP+GIPTY
Sbjct: 48  QVFSNENHTTGLGRKLQQSDEGGDGGPGGDMNRIGTSCSKDDIVIFQGQTAPLPNGIPTY 107

Query: 92  MVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQ 151
            VQILN+C S CSIS+IHV+C WFSSARLVNPR+FRR  YDDCLVNDG+ALGPG+TLSFQ
Sbjct: 108 TVQILNACVSGCSISDIHVRCGWFSSARLVNPRVFRRNDYDDCLVNDGEALGPGETLSFQ 167

Query: 152 YANTFPYPLSVASVTC 162
           YAN+F YPLSV+SV C
Sbjct: 168 YANSFRYPLSVSSVVC 183

The following BLAST results are available for this feature:

BLAST of Lsi01G004920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TDL1_ARATH	1.1e-46	65.12	TPD1 protein homolog 1 OS=Arabidopsis thaliana GN=TDL1 PE=2 SV=1	[more]
TPD1_ARATH	2.5e-35	56.91	Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana GN=TPD1 PE=1 SV=1	[more]
TDL1A_ORYSJ	1.9e-30	47.24	TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica GN=TDL1A PE=1 SV=1	[more]
TDL1B_ORYSJ	2.0e-24	45.22	TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica GN=TDL1B PE=2 SV=1	[more]
Y1583_ARATH	2.2e-07	40.28	Uncharacterized protein At1g05835 OS=Arabidopsis thaliana GN=At1g05835 PE=2 SV=1	[more]

BLAST of Lsi01G004920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL27_CUCSA	2.1e-76	86.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511090 PE=4 SV=1	[more]
A0A078GK28_BRANA	1.9e-45	68.00	BnaA05g18070D protein OS=Brassica napus GN=BnaA05g18070D PE=4 SV=1	[more]
M4D124_BRARP	1.9e-45	68.00	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
D7KHL8_ARALL	4.6e-44	66.40	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
F6HCV9_VITVI	4.6e-44	57.23	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00170 PE=4 SV=...	[more]

BLAST of Lsi01G004920 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32583.1	6.2e-48	65.12	FUNCTIONS IN: molecular_function unknown	[more]
AT4G24972.1	1.4e-36	56.91	tapetum determinant 1	[more]
AT1G05835.1	1.3e-08	40.28	PHD finger protein	[more]

BLAST of Lsi01G004920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659079118\|ref\|XP_008440085.1\|	1.3e-76	87.50	PREDICTED: uncharacterized protein LOC103484668 isoform X1 [Cucumis melo]	[more]
gi\|449434404\|ref\|XP_004134986.1\|	3.0e-76	86.96	PREDICTED: TPD1 protein homolog 1-like isoform X1 [Cucumis sativus]	[more]
gi\|659079120\|ref\|XP_008440086.1\|	1.4e-73	86.25	PREDICTED: uncharacterized protein LOC103484668 isoform X2 [Cucumis melo]	[more]
gi\|778720136\|ref\|XP_011658115.1\|	3.1e-73	85.71	PREDICTED: TPD1 protein homolog 1-like isoform X2 [Cucumis sativus]	[more]
gi\|657958863\|ref\|XP_008370972.1\|	5.4e-46	67.65	PREDICTED: uncharacterized protein LOC103434408 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009408	response to heat
biological_process	GO:0008150	biological_process
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G004920.1	Lsi01G004920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33184	FAMILY NOT NAMED	coord: 33..162 score: 2.2
None	No IPR available	PANTHER	PTHR33184:SF13	SUBFAMILY NOT NAMED	coord: 33..162 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G004920	Csa6G511090	Cucumber (Chinese Long) v2	culsiB434
Lsi01G004920	CSPI06G32890	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G004920	Cucsa.044660	Cucumber (Gy14) v1	cgylsiB022
Lsi01G004920	CmaCh03G005840	Cucurbita maxima (Rimu)	cmalsiB597
Lsi01G004920	CmoCh03G006100	Cucurbita moschata (Rifu)	cmolsiB582
Lsi01G004920	Cla014393	Watermelon (97103) v1	lsiwmB144
Lsi01G004920	MELO3C007447	Melon (DHL92) v3.5.1	lsimeB149
Lsi01G004920	ClCG01G021330	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G004920	MELO3C007447.2	Melon (DHL92) v3.6.1	lsimedB156
Lsi01G004920	Cla97C01G020910	Watermelon (97103) v2	lsiwmbB115
Lsi01G004920	Carg00505	Silver-seed gourd	carlsiB364
Lsi01G004920	CsaV3_6G048340	Cucumber (Chinese Long) v3	cuclsiB462

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G004920	Cucumber (Chinese Long) v3	cuclsiB017
Lsi01G004920	Watermelon (97103) v2	lsiwmbB112
Lsi01G004920	Wax gourd	lsiwgoB168
Lsi01G004920	Bottle gourd (USVL1VR-Ls)	lsilsiB064
Lsi01G004920	Cucurbita maxima (Rimu)	cmalsiB367
Lsi01G004920	Cucurbita maxima (Rimu)	cmalsiB517
Lsi01G004920	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G004920	Cucurbita moschata (Rifu)	cmolsiB502
Lsi01G004920	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G004920	Cucurbita pepo (Zucchini)	cpelsiB054
Lsi01G004920	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G004920	Cucurbita pepo (Zucchini)	cpelsiB413
Lsi01G004920	Wild cucumber (PI 183967)	cpilsiB019
Lsi01G004920	Cucumber (Chinese Long) v2	culsiB020
Lsi01G004920	Melon (DHL92) v3.5.1	lsimeB129
Lsi01G004920	Cucumber (Gy14) v2	cgyblsiB014
Lsi01G004920	Cucumber (Gy14) v2	cgyblsiB016
Lsi01G004920	Cucumber (Gy14) v2	cgyblsiB398
Lsi01G004920	Silver-seed gourd	carlsiB585