CmaCh03G005840 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G005840
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Tapetum determinant 1
Location	Cma_Chr03 : 5263391 .. 5264168 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTTGGTGCTTTTCCCAGATTTTTCCTCTGTTTTTCCCTGTTTCTTGGTAATTCTTCTGTTCTTTTAGTGGATCTTCTTCCCCATGTCATTTAAATTTATACCCAACCAGTTTTACTGTCTTTTGATTTGGAATATTCAGCGTTCAAGTTGGTTCGTTTGAGTGTTGTTCAGGCGGCTGCAAGAGAAAAAAACAGTGGAATTTCTTGGATGTCGCTTCAGTCTTCTAAAACTGGTAAGAAACGCATTGTTACAATTGTTCATTAGTTCTTTACTTATAAACCATGAATCTTATTCTAAATAGGTCGAGGGATGAATCGGGTTGGTTCAGAATGTTCAAAAGACGACGTGGTTGTATTTCAAGGGCAAACAGCTCCACTTCCAGATGGGATTCCATCGTTCATAGTTCAGATCTTAAATTCATGTTCTTCAGGCTGCAGCATCTCCAACATTCACATGAAATGTGGTTGGTTCAGCTCAGCCAGATTGGTGAATCCAAGAATTTTCCGGCGAGTCAAGTATGATGACTGCCTTATCAACGACGGCAAGGCTCTTGGTCCTGGCCAAACTCTGTCATTTCAATATGCTAACACTTTTCTTTACCCTCTTTCTGTATCTTCTGTAACTTGTTCTTCGTGACTTAACAAGCCTATGAACAGATAGCCCTTGTGGACCTTATGAATTGTCTATGATCCTTTAGTTTTCTAAGAACTTCTCACATTAATCATTTGATCGACTTTCTGTGTACATTCTGTTATAATCTTCTGTCAATTCG

mRNA sequence

ATGAAAGTTGGTGCTTTTCCCAGATTTTTCCTCTGTTTTTCCCTGTTTCTTGCGTTCAAGTTGGTTCGTTTGAGTGTTGTTCAGGCGGCTGCAAGAGAAAAAAACAGTGGAATTTCTTGGATGTCGCTTCAGTCTTCTAAAACTGGTCGAGGGATGAATCGGGTTGGTTCAGAATGTTCAAAAGACGACGTGGTTGTATTTCAAGGGCAAACAGCTCCACTTCCAGATGGGATTCCATCGTTCATAGTTCAGATCTTAAATTCATGTTCTTCAGGCTGCAGCATCTCCAACATTCACATGAAATGTGGTTGGTTCAGCTCAGCCAGATTGGTGAATCCAAGAATTTTCCGGCGAGTCAAGTATGATGACTGCCTTATCAACGACGGCAAGGCTCTTGGTCCTGGCCAAACTCTGTCATTTCAATATGCTAACACTTTTCTTTACCCTCTTTCTGTATCTTCTGTAACTTGTTCTTCGTGACTTAACAAGCCTATGAACAGATAGCCCTTGTGGACCTTATGAATTGTCTATGATCCTTTAGTTTTCTAAGAACTTCTCACATTAATCATTTGATCGACTTTCTGTGTACATTCTGTTATAATCTTCTGTCAATTCG

Coding sequence (CDS)

ATGAAAGTTGGTGCTTTTCCCAGATTTTTCCTCTGTTTTTCCCTGTTTCTTGCGTTCAAGTTGGTTCGTTTGAGTGTTGTTCAGGCGGCTGCAAGAGAAAAAAACAGTGGAATTTCTTGGATGTCGCTTCAGTCTTCTAAAACTGGTCGAGGGATGAATCGGGTTGGTTCAGAATGTTCAAAAGACGACGTGGTTGTATTTCAAGGGCAAACAGCTCCACTTCCAGATGGGATTCCATCGTTCATAGTTCAGATCTTAAATTCATGTTCTTCAGGCTGCAGCATCTCCAACATTCACATGAAATGTGGTTGGTTCAGCTCAGCCAGATTGGTGAATCCAAGAATTTTCCGGCGAGTCAAGTATGATGACTGCCTTATCAACGACGGCAAGGCTCTTGGTCCTGGCCAAACTCTGTCATTTCAATATGCTAACACTTTTCTTTACCCTCTTTCTGTATCTTCTGTAACTTGTTCTTCGTGA

Protein sequence

MKVGAFPRFFLCFSLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECSKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVKYDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCSS

Homology

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BLAST of CmaCh03G005840 vs. Swiss-Prot
Match: TDL1_ARATH (TPD1 protein homolog 1 OS=Arabidopsis thaliana GN=TDL1 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-44
Identity = 79/125 (63.20%), Postives = 99/125 (79.20%), Query Frame = 1


Query: 33  EKNSGISWMSLQSSKTGRGMNRVGSECSKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSG 92
           E  + +S   L S   G G NR+G +CSKDD+V+FQG T PLP G+PS+ V+I NSC S 
Sbjct: 54  ENRTALSRKLLLSPDIGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSD 113

Query: 93  CSISNIHMKCGWFSSARLVNPRIFRRVKYDDCLINDGKALGPGQTLSFQYANTFLYPLSV 152
           C+I+ IH+ CGWFSS RLVNPR+FRR+ YDDCL+NDG+ LGPGQ+LSFQYAN+F YPLSV
Sbjct: 114 CNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSV 173

Query: 153 SSVTC 158
           +SV+C
Sbjct: 174 ASVSC 178

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BLAST of CmaCh03G005840 vs. Swiss-Prot
Match: TPD1_ARATH (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana GN=TPD1 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.4e-35
Identity = 67/120 (55.83%), Postives = 88/120 (73.33%), Query Frame = 1


Query: 41  MSLQSSKTGRGMN--RVGSECSKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNI 100
           +S  + KT R +   R+G +C   D+VV Q  T P+P+GIP ++V+I N C SGC IS I
Sbjct: 57  LSPGTGKTERSVEPERIGEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRI 116

Query: 101 HMKCGWFSSARLVNPRIFRRVKYDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCS 159
           H+ CGWFSSA+L+NPR+F+R+ YDDCL+N+GK L  G TLSF YANTF Y LSV+ VTC+
Sbjct: 117 HINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFVTCA 176

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BLAST of CmaCh03G005840 vs. Swiss-Prot
Match: TDL1A_ORYSJ (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica GN=TDL1A PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.5e-29
Identity = 55/111 (49.55%), Postives = 80/111 (72.07%), Query Frame = 1


Query: 54  RVGSECS-KDDVVVFQGQTAPLPDGIPSFIVQILNSCSSG------CSISNIHMKCGWFS 113
           RV   C+  DD+ ++QG+  PLP G+P++ V ++N C+ G      C+I+ IH++CGWFS
Sbjct: 109 RVDDGCAGADDIAIYQGRATPLPSGVPAYTVDVMNRCAGGGGGDEECAIAGIHVRCGWFS 168

Query: 114 SARLVNPRIFRRVKYDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTC 158
           S  LV+PR+FRR+ +DDCL+NDG+ L  G+T+SF+Y N+F Y LSVS  TC
Sbjct: 169 SVSLVDPRVFRRLGHDDCLLNDGRPLLAGETVSFEYTNSFPYKLSVSVATC 219

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BLAST of CmaCh03G005840 vs. Swiss-Prot
Match: TDL1B_ORYSJ (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica GN=TDL1B PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.4e-24
Identity = 46/99 (46.46%), Postives = 74/99 (74.75%), Query Frame = 1


Query: 59  CSKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRR 118
           CS+ +VVV+Q     LP GIP++ V+I+N C++ C++ ++H+ CG F+SA LV+P  F+R
Sbjct: 71  CSEQNVVVYQNNAEHLPSGIPTYSVEIINVCTA-CTVYDVHISCGEFASAELVDPSQFQR 130

Query: 119 VKYDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTC 158
           + ++DCL+  G  LGP + +SFQY+N+F YPL+V++V C
Sbjct: 131 IGFNDCLVKGGGRLGPSEAVSFQYSNSFAYPLAVANVAC 168

[Close]

BLAST of CmaCh03G005840 vs. Swiss-Prot
Match: Y1583_ARATH (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.3e-07
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 1


Query: 81  FIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVKYD--DCLINDGKALGPGQTL 140
           F V+++N C   C I N+ +KC  F  + LV+P   R +     +C++NDG  L P QTL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 141 SFQYANTFLYPL 151
           SF Y+NT  + L
Sbjct: 108 SFNYSNTHQFAL 117

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BLAST of CmaCh03G005840 vs. TrEMBL
Match: A0A0A0KL27_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511090 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 7.7e-60
Identity = 117/160 (73.12%), Postives = 136/160 (85.00%), Query Frame = 1


Query: 4   GAFPRFFLCF--SLFLA--FKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSEC 63
           GAF RF L F  ++FL   FKLV L V+QAAARE  +GIS MSLQSS +G+ MNR+GS C
Sbjct: 5   GAFHRFCLWFLLTIFLGNEFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSRC 64

Query: 64  SKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRV 123
           +KDD+++FQG   PLP GIP++IVQILNSC+S CSISNIH+KCGWFSSARLVNPRIF+RV
Sbjct: 65  AKDDIIIFQGPATPLPGGIPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRV 124

Query: 124 KYDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCSS 160
            YDDCL+NDG+ALGPG+TLSFQYANTF YPLSVSS TCSS
Sbjct: 125 SYDDCLVNDGRALGPGRTLSFQYANTFPYPLSVSSATCSS 164

[Close]

BLAST of CmaCh03G005840 vs. TrEMBL
Match: M4D124_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 9.1e-45
Identity = 83/125 (66.40%), Postives = 101/125 (80.80%), Query Frame = 1


Query: 33  EKNSGISWMSLQSSKTGRGMNRVGSECSKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSG 92
           E  +G+S   L S   G G  R+G ECSKDDVVVFQG T PLP+G+P+F V+ILN+C+S 
Sbjct: 51  ENRNGLSRKLLLSPDIGDGTKRIGEECSKDDVVVFQGSTVPLPNGVPAFTVEILNACASD 110

Query: 93  CSISNIHMKCGWFSSARLVNPRIFRRVKYDDCLINDGKALGPGQTLSFQYANTFLYPLSV 152
           CS++ IH+ CGWFSS RLVNPR+FRR+ YDDCL+NDG+ L PGQTLSFQYAN+F YPLSV
Sbjct: 111 CSVAEIHVSCGWFSSVRLVNPRVFRRLSYDDCLVNDGQPLAPGQTLSFQYANSFAYPLSV 170

Query: 153 SSVTC 158
           SSV+C
Sbjct: 171 SSVSC 175

[Close]

BLAST of CmaCh03G005840 vs. TrEMBL
Match: A0A078GK28_BRANA (BnaA05g18070D protein OS=Brassica napus GN=BnaA05g18070D PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 9.1e-45
Identity = 83/125 (66.40%), Postives = 101/125 (80.80%), Query Frame = 1


Query: 33  EKNSGISWMSLQSSKTGRGMNRVGSECSKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSG 92
           E  +G+S   L S   G G  R+G ECSKDDVVVFQG T PLP+G+P+F V+ILN+C+S 
Sbjct: 51  ENRNGLSRKLLLSPDIGDGTKRIGEECSKDDVVVFQGSTVPLPNGVPAFTVEILNACASD 110

Query: 93  CSISNIHMKCGWFSSARLVNPRIFRRVKYDDCLINDGKALGPGQTLSFQYANTFLYPLSV 152
           CS++ IH+ CGWFSS RLVNPR+FRR+ YDDCL+NDG+ L PGQTLSFQYAN+F YPLSV
Sbjct: 111 CSVAEIHVSCGWFSSVRLVNPRVFRRLSYDDCLVNDGQPLAPGQTLSFQYANSFAYPLSV 170

Query: 153 SSVTC 158
           SSV+C
Sbjct: 171 SSVSC 175

[Close]

BLAST of CmaCh03G005840 vs. TrEMBL
Match: A0A078C858_BRANA (BnaC05g28500D protein OS=Brassica napus GN=BnaC05g28500D PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-43
Identity = 80/125 (64.00%), Postives = 101/125 (80.80%), Query Frame = 1


Query: 33  EKNSGISWMSLQSSKTGRGMNRVGSECSKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSG 92
           +  +G+S   L S   G G  R+G ECSKDD+VVFQG T PLP+G+P+F V+I+N+C+S 
Sbjct: 51  KNRTGVSRKLLLSPDIGDGTKRIGEECSKDDLVVFQGSTVPLPNGVPAFTVEIINACASD 110

Query: 93  CSISNIHMKCGWFSSARLVNPRIFRRVKYDDCLINDGKALGPGQTLSFQYANTFLYPLSV 152
           CS++ IH+ CGWFSS RLVNPR+FRR+ YDDCL+NDG+ L PGQTLSFQYAN+F YPLSV
Sbjct: 111 CSVTEIHVSCGWFSSVRLVNPRVFRRLSYDDCLVNDGQPLSPGQTLSFQYANSFSYPLSV 170

Query: 153 SSVTC 158
           SSV+C
Sbjct: 171 SSVSC 175

[Close]

BLAST of CmaCh03G005840 vs. TrEMBL
Match: A0A0D3CGN2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-43
Identity = 80/125 (64.00%), Postives = 101/125 (80.80%), Query Frame = 1


Query: 33  EKNSGISWMSLQSSKTGRGMNRVGSECSKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSG 92
           +  +G+S   L S   G G  R+G ECSKDD+VVFQG T PLP+G+P+F V+I+N+C+S 
Sbjct: 51  KNRTGVSRKLLLSPDIGDGTKRIGEECSKDDLVVFQGSTVPLPNGVPAFTVEIINACASD 110

Query: 93  CSISNIHMKCGWFSSARLVNPRIFRRVKYDDCLINDGKALGPGQTLSFQYANTFLYPLSV 152
           CS++ IH+ CGWFSS RLVNPR+FRR+ YDDCL+NDG+ L PGQTLSFQYAN+F YPLSV
Sbjct: 111 CSVTEIHVSCGWFSSVRLVNPRVFRRLSYDDCLVNDGQPLSPGQTLSFQYANSFSYPLSV 170

Query: 153 SSVTC 158
           SSV+C
Sbjct: 171 SSVSC 175

[Close]

BLAST of CmaCh03G005840 vs. TAIR10
Match: AT1G32583.1 (AT1G32583.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 180.6 bits (457), Expect = 7.4e-46
Identity = 79/125 (63.20%), Postives = 99/125 (79.20%), Query Frame = 1


Query: 33  EKNSGISWMSLQSSKTGRGMNRVGSECSKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSG 92
           E  + +S   L S   G G NR+G +CSKDD+V+FQG T PLP G+PS+ V+I NSC S 
Sbjct: 54  ENRTALSRKLLLSPDIGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSD 113

Query: 93  CSISNIHMKCGWFSSARLVNPRIFRRVKYDDCLINDGKALGPGQTLSFQYANTFLYPLSV 152
           C+I+ IH+ CGWFSS RLVNPR+FRR+ YDDCL+NDG+ LGPGQ+LSFQYAN+F YPLSV
Sbjct: 114 CNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSV 173

Query: 153 SSVTC 158
           +SV+C
Sbjct: 174 ASVSC 178

[Close]

BLAST of CmaCh03G005840 vs. TAIR10
Match: AT4G24972.1 (AT4G24972.1 tapetum determinant 1)

HSP 1 Score: 147.9 bits (372), Expect = 5.3e-36
Identity = 67/120 (55.83%), Postives = 88/120 (73.33%), Query Frame = 1


Query: 41  MSLQSSKTGRGMN--RVGSECSKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNI 100
           +S  + KT R +   R+G +C   D+VV Q  T P+P+GIP ++V+I N C SGC IS I
Sbjct: 57  LSPGTGKTERSVEPERIGEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRI 116

Query: 101 HMKCGWFSSARLVNPRIFRRVKYDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCS 159
           H+ CGWFSSA+L+NPR+F+R+ YDDCL+N+GK L  G TLSF YANTF Y LSV+ VTC+
Sbjct: 117 HINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFVTCA 176

[Close]

BLAST of CmaCh03G005840 vs. TAIR10
Match: AT1G05835.1 (AT1G05835.1 PHD finger protein)

HSP 1 Score: 55.1 bits (131), Expect = 4.7e-08
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 1


Query: 81  FIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVKYD--DCLINDGKALGPGQTL 140
           F V+++N C   C I N+ +KC  F  + LV+P   R +     +C++NDG  L P QTL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 141 SFQYANTFLYPL 151
           SF Y+NT  + L
Sbjct: 108 SFNYSNTHQFAL 117

[Close]

BLAST of CmaCh03G005840 vs. NCBI nr
Match: gi|659079120|ref|XP_008440086.1| (PREDICTED: uncharacterized protein LOC103484668 isoform X2 [Cucumis melo])

HSP 1 Score: 245.7 bits (626), Expect = 5.3e-62
Identity = 118/157 (75.16%), Postives = 136/157 (86.62%), Query Frame = 1


Query: 4   GAFPRFFLCF--SLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECSK 63
           GAF RF LCF  ++FL FKLV L V+QAAARE  +GIS MSLQSS +G+ MNR+GSECSK
Sbjct: 5   GAFHRFCLCFLLAIFLEFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSECSK 64

Query: 64  DDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVKY 123
            D+++FQG   PLP GIP++IVQILNSC+S CSISNIH+KCGWFSSARLVNPRIF+RV Y
Sbjct: 65  KDIIIFQGPATPLPGGIPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRVSY 124

Query: 124 DDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCS 159
           DDCL+NDG+ALGPG+TLSFQYANTF YPLSVSS TCS
Sbjct: 125 DDCLVNDGRALGPGRTLSFQYANTFPYPLSVSSATCS 161

[Close]

BLAST of CmaCh03G005840 vs. NCBI nr
Match: gi|778720136|ref|XP_011658115.1| (PREDICTED: TPD1 protein homolog 1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 4.5e-61
Identity = 117/158 (74.05%), Postives = 136/158 (86.08%), Query Frame = 1


Query: 4   GAFPRFFLCF--SLFLAFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSECSK 63
           GAF RF L F  ++FL FKLV L V+QAAARE  +GIS MSLQSS +G+ MNR+GS C+K
Sbjct: 5   GAFHRFCLWFLLTIFLEFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSRCAK 64

Query: 64  DDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRVKY 123
           DD+++FQG   PLP GIP++IVQILNSC+S CSISNIH+KCGWFSSARLVNPRIF+RV Y
Sbjct: 65  DDIIIFQGPATPLPGGIPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRVSY 124

Query: 124 DDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCSS 160
           DDCL+NDG+ALGPG+TLSFQYANTF YPLSVSS TCSS
Sbjct: 125 DDCLVNDGRALGPGRTLSFQYANTFPYPLSVSSATCSS 162

[Close]

BLAST of CmaCh03G005840 vs. NCBI nr
Match: gi|659079118|ref|XP_008440085.1| (PREDICTED: uncharacterized protein LOC103484668 isoform X1 [Cucumis melo])

HSP 1 Score: 241.1 bits (614), Expect = 1.3e-60
Identity = 118/159 (74.21%), Postives = 136/159 (85.53%), Query Frame = 1


Query: 4   GAFPRFFLCF--SLFLA--FKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSEC 63
           GAF RF LCF  ++FL   FKLV L V+QAAARE  +GIS MSLQSS +G+ MNR+GSEC
Sbjct: 5   GAFHRFCLCFLLAIFLGNEFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSEC 64

Query: 64  SKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRV 123
           SK D+++FQG   PLP GIP++IVQILNSC+S CSISNIH+KCGWFSSARLVNPRIF+RV
Sbjct: 65  SKKDIIIFQGPATPLPGGIPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRV 124

Query: 124 KYDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCS 159
            YDDCL+NDG+ALGPG+TLSFQYANTF YPLSVSS TCS
Sbjct: 125 SYDDCLVNDGRALGPGRTLSFQYANTFPYPLSVSSATCS 163

[Close]

BLAST of CmaCh03G005840 vs. NCBI nr
Match: gi|449434404|ref|XP_004134986.1| (PREDICTED: TPD1 protein homolog 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 1.1e-59
Identity = 117/160 (73.12%), Postives = 136/160 (85.00%), Query Frame = 1


Query: 4   GAFPRFFLCF--SLFLA--FKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGSEC 63
           GAF RF L F  ++FL   FKLV L V+QAAARE  +GIS MSLQSS +G+ MNR+GS C
Sbjct: 5   GAFHRFCLWFLLTIFLGNEFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSRC 64

Query: 64  SKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRRV 123
           +KDD+++FQG   PLP GIP++IVQILNSC+S CSISNIH+KCGWFSSARLVNPRIF+RV
Sbjct: 65  AKDDIIIFQGPATPLPGGIPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRV 124

Query: 124 KYDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTCSS 160
            YDDCL+NDG+ALGPG+TLSFQYANTF YPLSVSS TCSS
Sbjct: 125 SYDDCLVNDGRALGPGRTLSFQYANTFPYPLSVSSATCSS 164

[Close]

BLAST of CmaCh03G005840 vs. NCBI nr
Match: gi|657958863|ref|XP_008370972.1| (PREDICTED: uncharacterized protein LOC103434408 [Malus domestica])

HSP 1 Score: 195.3 bits (495), Expect = 8.2e-47
Identity = 97/159 (61.01%), Postives = 119/159 (74.84%), Query Frame = 1


Query: 14  SLFLAFKLVRLSVVQAAAREKN----------SGISWMSLQSSKTGRG-----MNRVGSE 73
           +LF A +L+ L  V  AA   N          +G+     QS + G G     MNR+G+ 
Sbjct: 25  ALFFAVELIHLGSVGEAAAGINRQVFSNENHTTGLGRKLQQSDEGGDGGPGGDMNRIGTS 84

Query: 74  CSKDDVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFRR 133
           CSKDD+V+FQGQTAPLP+GIP++ VQILN+C SGCSIS+IH++CGWFSSARLVNPR+FRR
Sbjct: 85  CSKDDIVIFQGQTAPLPNGIPTYTVQILNACVSGCSISDIHVRCGWFSSARLVNPRVFRR 144

Query: 134 VKYDDCLINDGKALGPGQTLSFQYANTFLYPLSVSSVTC 158
             YDDCL+NDG+ALGPG+TLSFQYAN+F YPLSVSSV C
Sbjct: 145 NDYDDCLVNDGEALGPGETLSFQYANSFRYPLSVSSVVC 183

The following BLAST results are available for this feature:

BLAST of CmaCh03G005840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TDL1_ARATH	1.3e-44	63.20	TPD1 protein homolog 1 OS=Arabidopsis thaliana GN=TDL1 PE=2 SV=1	[more]
TPD1_ARATH	9.4e-35	55.83	Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana GN=TPD1 PE=1 SV=1	[more]
TDL1A_ORYSJ	3.5e-29	49.55	TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica GN=TDL1A PE=1 SV=1	[more]
TDL1B_ORYSJ	4.4e-24	46.46	TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica GN=TDL1B PE=2 SV=1	[more]
Y1583_ARATH	8.3e-07	40.28	Uncharacterized protein At1g05835 OS=Arabidopsis thaliana GN=At1g05835 PE=2 SV=1	[more]

BLAST of CmaCh03G005840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL27_CUCSA	7.7e-60	73.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511090 PE=4 SV=1	[more]
M4D124_BRARP	9.1e-45	66.40	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A078GK28_BRANA	9.1e-45	66.40	BnaA05g18070D protein OS=Brassica napus GN=BnaA05g18070D PE=4 SV=1	[more]
A0A078C858_BRANA	1.0e-43	64.00	BnaC05g28500D protein OS=Brassica napus GN=BnaC05g28500D PE=4 SV=1	[more]
A0A0D3CGN2_BRAOL	1.0e-43	64.00	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of CmaCh03G005840 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32583.1	7.4e-46	63.20	FUNCTIONS IN: molecular_function unknown	[more]
AT4G24972.1	5.3e-36	55.83	tapetum determinant 1	[more]
AT1G05835.1	4.7e-08	40.28	PHD finger protein	[more]

BLAST of CmaCh03G005840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659079120\|ref\|XP_008440086.1\|	5.3e-62	75.16	PREDICTED: uncharacterized protein LOC103484668 isoform X2 [Cucumis melo]	[more]
gi\|778720136\|ref\|XP_011658115.1\|	4.5e-61	74.05	PREDICTED: TPD1 protein homolog 1-like isoform X2 [Cucumis sativus]	[more]
gi\|659079118\|ref\|XP_008440085.1\|	1.3e-60	74.21	PREDICTED: uncharacterized protein LOC103484668 isoform X1 [Cucumis melo]	[more]
gi\|449434404\|ref\|XP_004134986.1\|	1.1e-59	73.13	PREDICTED: TPD1 protein homolog 1-like isoform X1 [Cucumis sativus]	[more]
gi\|657958863\|ref\|XP_008370972.1\|	8.2e-47	61.01	PREDICTED: uncharacterized protein LOC103434408 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G005840.1	CmaCh03G005840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33184	FAMILY NOT NAMED	coord: 53..157 score: 7.3
None	No IPR available	PANTHER	PTHR33184:SF2	TPD1	coord: 53..157 score: 7.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G005840	Cucsa.044660	Cucumber (Gy14) v1	cgycmaB0047
CmaCh03G005840	Cla014393	Watermelon (97103) v1	cmawmB632
CmaCh03G005840	Csa6G511090	Cucumber (Chinese Long) v2	cmacuB681
CmaCh03G005840	MELO3C007447	Melon (DHL92) v3.5.1	cmameB611
CmaCh03G005840	ClCG01G021330	Watermelon (Charleston Gray)	cmawcgB579
CmaCh03G005840	CSPI06G32890	Wild cucumber (PI 183967)	cmacpiB689
CmaCh03G005840	CmoCh03G006100	Cucurbita moschata (Rifu)	cmacmoB653
CmaCh03G005840	Lsi01G004920	Bottle gourd (USVL1VR-Ls)	cmalsiB597
CmaCh03G005840	MELO3C007447.2	Melon (DHL92) v3.6.1	cmamedB694
CmaCh03G005840	CsaV3_6G048340	Cucumber (Chinese Long) v3	cmacucB0809
CmaCh03G005840	Cla97C01G020910	Watermelon (97103) v2	cmawmbB670
CmaCh03G005840	Carg00505	Silver-seed gourd	carcmaB0567

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G005840	Wax gourd	cmawgoB0788
CmaCh03G005840	Cucurbita maxima (Rimu)	cmacmaB233
CmaCh03G005840	Cucurbita maxima (Rimu)	cmacmaB399
CmaCh03G005840	Cucurbita maxima (Rimu)	cmacmaB523
CmaCh03G005840	Cucurbita moschata (Rifu)	cmacmoB667
CmaCh03G005840	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G005840	Cucurbita pepo (Zucchini)	cmacpeB671
CmaCh03G005840	Cucurbita pepo (Zucchini)	cmacpeB676
CmaCh03G005840	Cucumber (Gy14) v2	cgybcmaB128
CmaCh03G005840	Cucumber (Gy14) v2	cgybcmaB831
CmaCh03G005840	Silver-seed gourd	carcmaB0912