Cucsa.365720 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.365720
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold03611 : 3583936 .. 3585534 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCAAGAAGATTCCTTTATTGGTAGAGCCAAGAATAATAGATCCAAGATCCTGAACCCGAAAAAGGAAAATAAAAAGTTAAATATTACATGGAGGATTCAACTGAAAAGAACAGGAAACCAGAGATGATTCCCAAGAGGGTTGCTTCCTATTTGCCTATCATCTTCAAGTCTCTCCTTCAAATTCCGATGAGCATCTCAAGATTTTTGAGGTTTCAACTTTTTAGACAGCAACCACATGATTCTTCCTCCGCTTCCACCGTCGCACCGGACCCCAAAATTCTCATGGCGGCCAATATCCAAGCTACTCCTCAAACTTCAAGGGGTATCACTTTAGTAAGTATCTCTTCCACTGATCATCTCTTCTGATTTTTATTTATCTTAAGTACAATAATCACACTCTTACAATTTGGACCTAAAGAAAACATTTCAATGTTTTCTCCACCAATTCATATGTAAATATTGAAATTACTCATTTTCAAATTCTAACTTCCTTTTTCTTTTTTAATTTTCAAGATACTTCATCTTACACTGCTAAACTTCTAATATAAACTCTCAAATTCCAACGCATATATATTCAATCCACAATTCAAAAGTTAACAAAACACTCTCTTTTGTTTAAATTTTAAAGGTAATCATAGGAATGACAAGAAATATTATAAGACTTTCTAATTTAGCAATATTTTTTGAAAATTTCAAATATAGCAATTTAAAGTTTGATTTTTGTTTTTATTACGCTAAATTCACTCTACTTAGTGTATTAGCTTTATATTAATTATATATCCCATATACTTTTATGTTTGGTGTATTGGTTAACCAACTGATATACTCTATATTTGATATATATATATATATTAATCAATCGATGAACTCTTATACTTTGTAGTACGTTAATTATATCATTGACTTAATTTGGATATTATGTGCAAAGTATCATAATTTAAACATAAGTCTAAGTTATTTTAAAATGAAAGAAAACAAAAAGTTATTTGCAGCTTGTGTACACTTAGATAGCTGCCCAATAAAATTTGTACACATGACATCGATGTATTTCTTTTTCAACACAAAAATTTGAATTGGTTTTATTTTGGTTTTACCGTGTATTAAATTAATTAATTAAGCTAAATTTGAAAGTTAAGGTCATATAATTGGATATATGAAATAAAATGGTAGAGGTGGTTCTCTCACATCGTCCAATGGAACGTTAAAGAAGCAACACTAGTAGCTAGATCTTCTCACATCTATACATCGTCAATAGTACTTTCTCTTCTACCGATCAATTTTTTTTAATTTTATCATATATGTTTTCTGTTTGTGTTTTTTTCTTCTAACTTTGTAGGGAATTCAAATGAATTGATTGGAGCGTTCAAGTCCCCCACAATCTTATGTTTTTTATATAATATATATAGAAAAACGTGTATTCATCTCACTGATCGAATATGTGTGCTGTTTTGCAGAGGAAGGATAGAAGGAAAAGGGATTCGCACATAAAACCATGCAGAAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCGTCCTTTAAATGATCATCATAATAATGGTCCTTAAA

mRNA sequence

GCCAAGAAGATTCCTTTATTGGTAGAGCCAAGAATAATAGATCCAAGATCCTGAACCCGAAAAAGGAAAATAAAAAGTTAAATATTACATGGAGGATTCAACTGAAAAGAACAGGAAACCAGAGATGATTCCCAAGAGGGTTGCTTCCTATTTGCCTATCATCTTCAAGTCTCTCCTTCAAATTCCGATGAGCATCTCAAGATTTTTGAGGTTTCAACTTTTTAGACAGCAACCACATGATTCTTCCTCCGCTTCCACCGTCGCACCGGACCCCAAAATTCTCATGGCGGCCAATATCCAAGCTACTCCTCAAACTTCAAGGGGTATCACTTTAAGGAAGGATAGAAGGAAAAGGGATTCGCACATAAAACCATGCAGAAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCGTCCTTTAAATGATCATCATAATAATGGTCCTTAAA

Coding sequence (CDS)

ATGGAGGATTCAACTGAAAAGAACAGGAAACCAGAGATGATTCCCAAGAGGGTTGCTTCCTATTTGCCTATCATCTTCAAGTCTCTCCTTCAAATTCCGATGAGCATCTCAAGATTTTTGAGGTTTCAACTTTTTAGACAGCAACCACATGATTCTTCCTCCGCTTCCACCGTCGCACCGGACCCCAAAATTCTCATGGCGGCCAATATCCAAGCTACTCCTCAAACTTCAAGGGGTATCACTTTAAGGAAGGATAGAAGGAAAAGGGATTCGCACATAAAACCATGCAGAAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCGTCCTTTAA

Protein sequence

MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAPDPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL*
Homology
[Close]
BLAST of Cucsa.365720 vs. TrEMBL
Match: A0A0A0KAN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020180 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.4e-61
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

Query: 1   MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP 60
           MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP
Sbjct: 1   MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP 60

Query: 61  DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 120
           DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL
Sbjct: 61  DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 120

[Close]
BLAST of Cucsa.365720 vs. NCBI nr
Match: gi|778709895|ref|XP_004138359.2| (PREDICTED: uncharacterized protein LOC101208209 isoform X1 [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 3.4e-61
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

Query: 1   MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP 60
           MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP
Sbjct: 1   MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP 60

Query: 61  DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 120
           DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL
Sbjct: 61  DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 120

[Close]
BLAST of Cucsa.365720 vs. NCBI nr
Match: gi|778709899|ref|XP_011656472.1| (PREDICTED: uncharacterized protein LOC101208209 isoform X2 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 4.2e-51
Identity = 107/120 (89.17%), Postives = 107/120 (89.17%), Query Frame = 1 

Query: 1   MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP 60
           MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP
Sbjct: 1   MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP 60

Query: 61  DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 120
                        PQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL
Sbjct: 61  -------------PQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 107

The following BLAST results are available for this feature:
BLAST of Cucsa.365720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAN8_CUCSA2.4e-61100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020180 PE=4 SV=1[more]
BLAST of Cucsa.365720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778709895|ref|XP_004138359.2|3.4e-61100.00PREDICTED: uncharacterized protein LOC101208209 isoform X1 [Cucumis sativus][more]
gi|778709899|ref|XP_011656472.1|4.2e-5189.17PREDICTED: uncharacterized protein LOC101208209 isoform X2 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.365720.1Cucsa.365720.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.365720Csa6G020180Cucumber (Chinese Long) v2cgycuB511
Cucsa.365720MELO3C026143Melon (DHL92) v3.5.1cgymeB590
Cucsa.365720CSPI06G02710Wild cucumber (PI 183967)cgycpiB540
Cucsa.365720MELO3C026143.2Melon (DHL92) v3.6.1cgymedB588
Cucsa.365720CsaV3_6G002950Cucumber (Chinese Long) v3cgycucB556
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.365720Melon (DHL92) v3.5.1cgymeB592
Cucsa.365720Watermelon (Charleston Gray)cgywcgB622
Cucsa.365720Watermelon (Charleston Gray)cgywcgB627
Cucsa.365720Watermelon (97103) v1cgywmB656
Cucsa.365720Watermelon (97103) v1cgywmB657
Cucsa.365720Watermelon (97103) v1cgywmB661
Cucsa.365720Bottle gourd (USVL1VR-Ls)cgylsiB591
Cucsa.365720Watermelon (97103) v2cgywmbB627
Cucsa.365720Watermelon (97103) v2cgywmbB633
Cucsa.365720Wax gourdcgywgoB733