MELO3C026143.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026143.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr03 : 18230775 .. 18232582 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAACTATTTGGTTCATAATCAATGGATTGAAGAGTCAAGAAGATTCCTTATTGTTGGTAGAGCGAAGGAGAATAGATCCAATATCTAAACCGAAAAAAGTGAAATAAAAAATTAAATATATATATATGGAGATTCAAGTGAAAAGAATAGGAAACGAGAGATGATTCCGAAGAGGGTTGCTTTGTATTTGCCTATCATCTTCAAGTCTCTCCTACAAATTCCGATGAGCATCTCAAGATTTTTGAGGTTTCAACTTTTTAGAGAGCAACCACATGTGTCTTCCTCCGCTTCCACCGTCGCACCTCCTCAAACTTCAAGGGGTATCGTCACATTAGTATGTATCTCTTCCACTCTCTTCTGATTTTTATTTATTTTAAGTACAATAATCACTCTCTACGCTTTGGACCCAAAGAAAACATTTCAACATTGAATTACTCCATTTCAAATTCTAACTTTTCTTTTTTTGGACATTTATAGAGATACTTAATAACTCCCAATATAGAACACTTTCAAATTCCAACACATATATATTGAATCCACCACTCCAAAGTCAACAAAACACTCTCTTTTGTTTATATTTTAGGGGTAATTATAGGAATGACTATAAATATTTTAAGATTTTTTTAATTTAGCAAGATTTTTTTTTTTTTTTTAATTTTCAAATATAGCAATTTAAGTCTGATTTTGTGTTTTTATTACGCTAAATTTACTCTATTTAGTGTATTAGTTTTATATTAATTATATATCCCATATACTTTTTAAGTTTGATTTTGTGTTTGGATTGCTTAGATAGATGCGAAATAAAACTTTTAGATATGAAATATGTTTCTTTTTTTTTTTTTTTTTTTTAAGCAACACAAAAATTTGAATTGGTTTTATTTTGATTTTACTATGCAACAAAAATACTGTAAGAGATGGGTCCATTTAAAAATTAAATAAAATTAATTAAGCTAAATTGGAAAGTTGAGATCATATAATTGATATACGGAATAAAAGAGGAAGGATGGTTATCTAAAGTCATCCAATTGAATATTGAAAAAGTAGACACTAGTAGCTAAATCTCCTCACATCTATATGATTCTATAGACTTAAATTAATTATTGAAAGTTATTATACATAGTTAACGGAACTATCTCTATCGACAATCAATTTTTCTGATTCTGTTATACACATTCATTTTGTCTGTCTTTCTGTCTGTTTTTCTCTTTTTTTTTTTAGATTTAATATAGGTTCAGATAGTTGGAGTTGTTGACGTTGTTTATATAATATATATAAAAAAGTTGAAATAATTACAAATAATTATAAGGGGAGGTAGTTTAGTCACATACCTGTCGTTCAATCTTCTTGGACTCAAGTTCAAGCCTCGGTATTTTCCTTTTTTTTTTTCGGATTTAATTTTGATGAATTATAAAGTGCATTCGCCTCACTGATCCAATGTGTGCTGTTTTGTAGAGGAAGGATAGAAGGAAAAGGAATTCGCACATAAAACCATGCAGGAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCCTCCGCACATAAAACCATGCAGGAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATCGATCCTCCTCGCTTCCTCCTCTAAATGACCATCATAATAATGCTCCTCAAAATCCCACGTCACATAATTTACTATTTCTGTTGTATGCATTTGGACATTTTCTCTCTCTCTTTTTTTATATGTTTTATAAATAACCTTTAAATTGAATGACTATTTTGAAGTACTGATTCTGTG

mRNA sequence

AAAGAACTATTTGGTTCATAATCAATGGATTGAAGAGTCAAGAAGATTCCTTATTGTTGGTAGAGCGAAGGAGAATAGATCCAATATCTAAACCGAAAAAAGTGAAATAAAAAATTAAATATATATATATGGAGATTCAAGTGAAAAGAATAGGAAACGAGAGATGATTCCGAAGAGGGTTGCTTTGTATTTGCCTATCATCTTCAAGTCTCTCCTACAAATTCCGATGAGCATCTCAAGATTTTTGAGGTTTCAACTTTTTAGAGAGCAACCACATGTGTCTTCCTCCGCTTCCACCGTCGCACCTCCTCAAACTTCAAGGGGTATCGTCACATTAAGGAAGGATAGAAGGAAAAGGAATTCGCACATAAAACCATGCAGGAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCCTCCGCACATAAAACCATGCAGGAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATCGATCCTCCTCGCTTCCTCCTCTAAATGACCATCATAATAATGCTCCTCAAAATCCCACGTCACATAATTTACTATTTCTGTTGTATGCATTTGGACATTTTCTCTCTCTCTTTTTTTATATGTTTTATAAATAACCTTTAAATTGAATGACTATTTTGAAGTACTGATTCTGTG

Coding sequence (CDS)

ATGATTCCGAAGAGGGTTGCTTTGTATTTGCCTATCATCTTCAAGTCTCTCCTACAAATTCCGATGAGCATCTCAAGATTTTTGAGGTTTCAACTTTTTAGAGAGCAACCACATGTGTCTTCCTCCGCTTCCACCGTCGCACCTCCTCAAACTTCAAGGGGTATCGTCACATTAAGGAAGGATAGAAGGAAAAGGAATTCGCACATAAAACCATGCAGGAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCCTCCGCACATAA

Protein sequence

MIPKRVALYLPIIFKSLLQIPMSISRFLRFQLFREQPHVSSSASTVAPPQTSRGIVTLRKDRRKRNSHIKPCRSNGGGGQTNSLKCDRIDPPRFLRT

Homology

[Close]

BLAST of MELO3C026143.2 vs. NCBI nr
Match: XP_011656472.1 (PREDICTED: uncharacterized protein LOC101208209 isoform X2 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 2.3e-40
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1   MIPKRVALYLPIIFKSLLQIPMSISRFLRFQLFREQPHVSSSASTVAPPQTSRGIVTLRK 60
           MIPKRVA YLPIIFKSLLQIPMSISRFLRFQLFR+QPH SSSASTVAPPQTSRGI TLRK
Sbjct: 13  MIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAPPQTSRGI-TLRK 72

Query: 61  DRRKRNSHIKPCRSNGGGGQTNSLKCDRIDPPRFL 96
           DRRKR+SHIKPCRSNGGGGQTNSLKCDRIDPPRF+
Sbjct: 73  DRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFV 106

[Close]

BLAST of MELO3C026143.2 vs. NCBI nr
Match: XP_004138359.2 (PREDICTED: uncharacterized protein LOC101208209 isoform X1 [Cucumis sativus] >KGN45904.1 hypothetical protein Csa_6G020180 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 1.4e-37
Identity = 89/108 (82.41%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 1   MIPKRVALYLPIIFKSLLQIPMSISRFLRFQLFREQPHVSSSASTVAP------------ 60
           MIPKRVA YLPIIFKSLLQIPMSISRFLRFQLFR+QPH SSSASTVAP            
Sbjct: 13  MIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAPDPKILMAANIQA 72

Query: 61  -PQTSRGIVTLRKDRRKRNSHIKPCRSNGGGGQTNSLKCDRIDPPRFL 96
            PQTSRGI TLRKDRRKR+SHIKPCRSNGGGGQTNSLKCDRIDPPRF+
Sbjct: 73  TPQTSRGI-TLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFV 119

[Close]

BLAST of MELO3C026143.2 vs. TrEMBL
Match: tr|A0A0A0KAN8|A0A0A0KAN8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020180 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 9.3e-38
Identity = 89/108 (82.41%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 1   MIPKRVALYLPIIFKSLLQIPMSISRFLRFQLFREQPHVSSSASTVAP------------ 60
           MIPKRVA YLPIIFKSLLQIPMSISRFLRFQLFR+QPH SSSASTVAP            
Sbjct: 13  MIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAPDPKILMAANIQA 72

Query: 61  -PQTSRGIVTLRKDRRKRNSHIKPCRSNGGGGQTNSLKCDRIDPPRFL 96
            PQTSRGI TLRKDRRKR+SHIKPCRSNGGGGQTNSLKCDRIDPPRF+
Sbjct: 73  TPQTSRGI-TLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFV 119

The following BLAST results are available for this feature:

BLAST of MELO3C026143.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656472.1	2.3e-40	93.68	PREDICTED: uncharacterized protein LOC101208209 isoform X2 [Cucumis sativus]	[more]
XP_004138359.2	1.4e-37	82.41	PREDICTED: uncharacterized protein LOC101208209 isoform X1 [Cucumis sativus] >KG...	[more]

BLAST of MELO3C026143.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C026143.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C026143.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KAN8\|A0A0A0KAN8_CUCSA	9.3e-38	82.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020180 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026143.2.1	MELO3C026143.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..97

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C026143.2	Csa6G020180	Cucumber (Chinese Long) v2	cumedB455
MELO3C026143.2	CSPI06G02710	Wild cucumber (PI 183967)	cpimedB464
MELO3C026143.2	Cucsa.365720	Cucumber (Gy14) v1	cgymedB588
MELO3C026143.2	CsGy6G002820	Cucumber (Gy14) v2	cgybmedB413
MELO3C026143.2	CsaV3_6G002950	Cucumber (Chinese Long) v3	cucmedB473

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C026143.2	Watermelon (97103) v2	medwmbB291
MELO3C026143.2	Wax gourd	medwgoB328
MELO3C026143.2	Bottle gourd (USVL1VR-Ls)	lsimedB495
MELO3C026143.2	Watermelon (Charleston Gray)	medwcgB290
MELO3C026143.2	Watermelon (97103) v1	medwmB306