CsaV3_6G002950 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G002950
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6 : 2158102 .. 2160138 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACATATTAACAGCCAAGAAGATTCCTTTATTGGTAGAGCCAAGAATAATAGATCCAAGATCCTGAACCCGAAAAAGGAAAATAAAAAGTTAAATATTACATGGAGGATTCAACTGAAAAGAACAGGAAACCAGAGATGATTCCCAAGAGGGTTGCTTCCTATTTGCCTATCATCTTCAAGTCTCTCCTTCAAATTCCGATGAGCATCTCAAGATTTTTGAGGTTTCAACTTTTTAGACAGCAACCACATGATTCTTCCTCCGCTTCCACCGTCGCACCGGACCCCAAAATTCTCATGGCGGCCAATATCCAAGCTACTCCTCAAACTTCAAGGGGTATCACTTTAGTAAGTATCTCTTCCACTGATCATCTCTTCTGATTTTTATTTATCTTAAGTACAATAATCACACTCTTACAATTTGGACCTAAAGAAAACATTTCAATGTTTTCTCCACCAATTCATATGTAAATATTGAAATTACTCATTTTCAAATTCTAACTTCCTTTTTCTTTTTTAATTTTCAAGATACTTCATCTTACACTGCTAAACTTCTAATATAAACTCTCAAATTCCAACGCATATATATTCAATCCACAATTCAAAAGTTAACAAAACACTCTCTTTTGTTTAAATTTTAAAGGTAATCATAGGAATGACAAGAAATATTATAAGACTTTCTAATTTAGCAATATTTTTTGAAAATTTCAAATATAGCAATTTAAAGTTTGATTTTTGTTTTTATTACGCTAAATTCACTCTACTTAGTGTATTAGCTTTATATTAATTATATATCCCATATACTTTTATGTTTGGTGTATTGGTTAACCAACTGATATACTCTATATTTGATATATATATATATATTAATCAATCGATGAACTCTTATACTTTGTAGTACGTTAATTATATCATTGACTTAATTTGGATATTATGTGCAAAGTATCATAATTTAAACATAAGTCTAAGTTATTTTAAAATGAAAGAAAACAAAAAGTTATTTGCAGCTTGTGTACACTTAGATAGCTGCCCAATAAAATTTGTACACATGACATCGATGTATTTCTTTTTCAACACAAAAATTTGAATTGGTTTTATTTTGGTTTTACCGTGTATTAAATTAATTAATTAAGCTAAATTTGAAAGTTAAGGTCATATAATTGGATATATGAAATAAAATGGTAGAGGTGGTTCTCTCACATCGTCCAATGGAACGTTAAAGAAGCAACACTAGTAGCTAGATCTTCTCACATCTATACATCGTCAATAGTACTTTCTCTTCTACCGATCAATTTTTTTTAATTTTATCATATATGTTTTCTGTTTGTGTTTTTTTCTTCTAACTTTGTAGGGAATTCAAATGAATTGATTGGAGCGTTCAAGTCCCCCACAATCTTATGTTTTTTATATAATATATATAGAAAAACGTGTATTCATCTCACTGATCGAATATGTGTGCTGTTTTGCAGAGGAAGGATAGAAGGAAAAGGGATTCGCACATAAAACCATGCAGAAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCGTCCTTTAAATGATCATCATAATAATGGTCCTTAAAATCCCACTTCACATAATTTACTAGTTCTGTTGTATACATGCATTTGGATGTTCTCTCTCTCTCTTTTTATATGTTTTATAAATAACCTTTAAATTGAATGACTATTTTGAAGTGATTATATATGTGCTGTGATGTGTTTTTAAGAAACTACTTGTGTTATATGTGTGCATTTTGGTTATATTAGGCTAGGCTAGCTATGATGTGAATTTGAGATAACTATTGCACGAATAAAGCAGGTTTACTATGTCAATGATGTGTGTTCCGATAACCGAGGGCTATGATAATTGTGTCAAATGCAATTGTACAATTAGTTGAAAGTTTTCAATATACATAAGGATGATCATTATCGATGTATATATTGACAACTCAAATTTACAGTTATACGACAGATATTTAAAAAAAAATCATAGATATTATGAAAATTT

mRNA sequence

ATGGAGGATTCAACTGAAAAGAACAGGAAACCAGAGATGATTCCCAAGAGGGTTGCTTCCTATTTGCCTATCATCTTCAAGTCTCTCCTTCAAATTCCGATGAGCATCTCAAGATTTTTGAGGTTTCAACTTTTTAGACAGCAACCACATGATTCTTCCTCCGCTTCCACCGTCGCACCGGACCCCAAAATTCTCATGGCGGCCAATATCCAAGCTACTCCTCAAACTTCAAGGGGTATCACTTTAAGGAAGGATAGAAGGAAAAGGGATTCGCACATAAAACCATGCAGAAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCGTCCTTTAA

Coding sequence (CDS)

ATGGAGGATTCAACTGAAAAGAACAGGAAACCAGAGATGATTCCCAAGAGGGTTGCTTCCTATTTGCCTATCATCTTCAAGTCTCTCCTTCAAATTCCGATGAGCATCTCAAGATTTTTGAGGTTTCAACTTTTTAGACAGCAACCACATGATTCTTCCTCCGCTTCCACCGTCGCACCGGACCCCAAAATTCTCATGGCGGCCAATATCCAAGCTACTCCTCAAACTTCAAGGGGTATCACTTTAAGGAAGGATAGAAGGAAAAGGGATTCGCACATAAAACCATGCAGAAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCGTCCTTTAA

Protein sequence

MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAPDPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL

Homology

[Close]

BLAST of CsaV3_6G002950 vs. NCBI nr
Match: XP_004138359.2 (PREDICTED: uncharacterized protein LOC101208209 isoform X1 [Cucumis sativus] >KGN45904.1 hypothetical protein Csa_6G020180 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 1.9e-60
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP 60
           MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP
Sbjct: 1   MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP 60

Query: 61  DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 120
           DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL
Sbjct: 61  DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 120

[Close]

BLAST of CsaV3_6G002950 vs. NCBI nr
Match: XP_011656472.1 (PREDICTED: uncharacterized protein LOC101208209 isoform X2 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 2.4e-50
Identity = 107/120 (89.17%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP 60
           MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP
Sbjct: 1   MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP 60

Query: 61  DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 120
                        PQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL
Sbjct: 61  -------------PQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 107

[Close]

BLAST of CsaV3_6G002950 vs. TrEMBL
Match: tr|A0A0A0KAN8|A0A0A0KAN8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020180 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.3e-60
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP 60
           MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP
Sbjct: 1   MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP 60

Query: 61  DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 120
           DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL
Sbjct: 61  DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 120

The following BLAST results are available for this feature:

BLAST of CsaV3_6G002950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138359.2	1.9e-60	100.00	PREDICTED: uncharacterized protein LOC101208209 isoform X1 [Cucumis sativus] >KG...	[more]
XP_011656472.1	2.4e-50	89.17	PREDICTED: uncharacterized protein LOC101208209 isoform X2 [Cucumis sativus]	[more]

BLAST of CsaV3_6G002950 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G002950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G002950 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KAN8\|A0A0A0KAN8_CUCSA	1.3e-60	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020180 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G002950.1	CsaV3_6G002950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..120

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G002950	CSPI06G02710	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G002950	Cucsa.365720	Cucumber (Gy14) v1	cgycucB556
CsaV3_6G002950	CsGy6G002820	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G002950	MELO3C026143	Melon (DHL92) v3.5.1	cucmeB489
CsaV3_6G002950	MELO3C026143.2	Melon (DHL92) v3.6.1	cucmedB473

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G002950	Bottle gourd (USVL1VR-Ls)	cuclsiB501
CsaV3_6G002950	Melon (DHL92) v3.5.1	cucmeB478
CsaV3_6G002950	Watermelon (Charleston Gray)	cucwcgB518
CsaV3_6G002950	Watermelon (97103) v1	cucwmB490
CsaV3_6G002950	Watermelon (97103) v1	cucwmB491
CsaV3_6G002950	Watermelon (97103) v1	cucwmB501
CsaV3_6G002950	Watermelon (97103) v1	cucwmB502
CsaV3_6G002950	Watermelon (97103) v2	cucwmbB508
CsaV3_6G002950	Watermelon (97103) v2	cucwmbB523
CsaV3_6G002950	Wax gourd	cucwgoB609