MELO3C026143 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026143
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Sterile alpha motif (SAM) domain-containing protein
Location	chr3 : 18651126 .. 18652933 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAACTATTTGGTTCATAATCAATGGATTGAAGAGTCAAGAAGATTCCTTATTGTTGGTAGAGCGAAGGAGAATAGATCCAATATCTAAACCGAAAAAAGTGAAATAAAAAATTAAATATATATATATGGAGATTCAAGTGAAAAGAATAGGAAACGAGAGATGATTCCGAAGAGGGTTGCTTTGTATTTGCCTATCATCTTCAAGTCTCTCCTACAAATTCCGATGAGCATCTCAAGATTTTTGAGGTTTCAACTTTTTAGAGAGCAACCACATGTGTCTTCCTCCGCTTCCACCGTCGCACCTCCTCAAACTTCAAGGGGTATCGTCACATTAGTATGTATCTCTTCCACTCTCTTCTGATTTTTATTTATTTTAAGTACAATAATCACTCTCTACGCTTTGGACCCAAAGAAAACATTTCAACATTGAATTACTCCATTTCAAATTCTAACTTTTCTTTTTTTGGACATTTATAGAGATACTTAATAACTCCCAATATAGAACACTTTCAAATTCCAACACATATATATTGAATCCACCACTCCAAAGTCAACAAAACACTCTCTTTTGTTTATATTTTAGGGGTAATTATAGGAATGACTATAAATATTTTAAGATTTTTTTAATTTAGCAAGATTTTTTTTTTTTTTTTAATTTTCAAATATAGCAATTTAAGTCTGATTTTGTGTTTTTATTACGCTAAATTTACTCTATTTAGTGTATTAGTTTTATATTAATTATATATCCCATATACTTTTTAAGTTTGATTTTGTGTTTGGATTGCTTAGATAGATGCGAAATAAAACTTTTAGATATGAAATATGTTTCTTTTTTTTTTTTTTTTTTTTAAGCAACACAAAAATTTGAATTGGTTTTATTTTGATTTTACTATGCAACAAAAATACTGTAAGAGATGGGTCCATTTAAAAATTAAATAAAATTAATTAAGCTAAATTGGAAAGTTGAGATCATATAATTGATATACGGAATAAAAGAGGAAGGATGGTTATCTAAAGTCATCCAATTGAATATTGAAAAAGTAGACACTAGTAGCTAAATCTCCTCACATCTATATGATTCTATAGACTTAAATTAATTATTGAAAGTTATTATACATAGTTAACGGAACTATCTCTATCGACAATCAATTTTTCTGATTCTGTTATACACATTCATTTTGTCTGTCTTTCTGTCTGTTTTTCTCTTTTTTTTTTTAGATTTAATATAGGTTCAGATAGTTGGAGTTGTTGACGTTGTTTATATAATATATATAAAAAAGTTGAAATAATTACAAATAATTATAAGGGGAGGTAGTTTAGTCACATACCTGTCGTTCAATCTTCTTGGACTCAAGTTCAAGCCTCGGTATTTTCCTTTTTTTTTTTCGGATTTAATTTTGATGAATTATAAAGTGCATTCGCCTCACTGATCCAATGTGTGCTGTTTTGTAGAGGAAGGATAGAAGGAAAAGGAATTCGCACATAAAACCATGCAGGAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCCTCCGCACATAAAACCATGCAGGAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATCGATCCTCCTCGCTTCCTCCTCTAAATGACCATCATAATAATGCTCCTCAAAATCCCACGTCACATAATTTACTATTTCTGTTGTATGCATTTGGACATTTTCTCTCTCTCTTTTTTTATATGTTTTATAAATAACCTTTAAATTGAATGACTATTTTGAAGTACTGATTCTGTG

mRNA sequence

AAAGAACTATTTGGTTCATAATCAATGGATTGAAGAGTCAAGAAGATTCCTTATTGTTGGTAGAGCGAAGGAGAATAGATCCAATATCTAAACCGAAAAAAGTGAAATAAAAAATTAAATATATATATATGGAGATTCAAGTGAAAAGAATAGGAAACGAGAGATGATTCCGAAGAGGGTTGCTTTGTATTTGCCTATCATCTTCAAGTCTCTCCTACAAATTCCGATGAGCATCTCAAGATTTTTGAGGTTTCAACTTTTTAGAGAGCAACCACATGTGTCTTCCTCCGCTTCCACCGTCGCACCTCCTCAAACTTCAAGGGGTATCGTCACATTAAGGAAGGATAGAAGGAAAAGGAATTCGCACATAAAACCATGCAGGAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCCTCCGCACATAAAACCATGCAGGAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATCGATCCTCCTCGCTTCCTCCTCTAAATGACCATCATAATAATGCTCCTCAAAATCCCACGTCACATAATTTACTATTTCTGTTGTATGCATTTGGACATTTTCTCTCTCTCTTTTTTTATATGTTTTATAAATAACCTTTAAATTGAATGACTATTTTGAAGTACTGATTCTGTG

Coding sequence (CDS)

ATGATTCCGAAGAGGGTTGCTTTGTATTTGCCTATCATCTTCAAGTCTCTCCTACAAATTCCGATGAGCATCTCAAGATTTTTGAGGTTTCAACTTTTTAGAGAGCAACCACATGTGTCTTCCTCCGCTTCCACCGTCGCACCTCCTCAAACTTCAAGGGGTATCGTCACATTAAGGAAGGATAGAAGGAAAAGGAATTCGCACATAAAACCATGCAGGAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCCTCCGCACATAA

Protein sequence

MIPKRVALYLPIIFKSLLQIPMSISRFLRFQLFREQPHVSSSASTVAPPQTSRGIVTLRKDRRKRNSHIKPCRSNGGGGQTNSLKCDRIDPPRFLRT*

Homology

[Close]

BLAST of MELO3C026143 vs. TrEMBL
Match: A0A0A0KAN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020180 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.2e-39
Identity = 90/109 (82.57%), Postives = 93/109 (85.32%), Query Frame = 1


Query: 1   MIPKRVALYLPIIFKSLLQIPMSISRFLRFQLFREQPHVSSSASTVAP------------ 60
           MIPKRVA YLPIIFKSLLQIPMSISRFLRFQLFR+QPH SSSASTVAP            
Sbjct: 13  MIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAPDPKILMAANIQA 72

Query: 61  -PQTSRGIVTLRKDRRKRNSHIKPCRSNGGGGQTNSLKCDRIDPPRFLL 97
            PQTSRGI TLRKDRRKR+SHIKPCRSNGGGGQTNSLKCDRIDPPRF+L
Sbjct: 73  TPQTSRGI-TLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 120

[Close]

BLAST of MELO3C026143 vs. NCBI nr
Match: gi|778709899|ref|XP_011656472.1| (PREDICTED: uncharacterized protein LOC101208209 isoform X2 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-42
Identity = 90/96 (93.75%), Postives = 93/96 (96.88%), Query Frame = 1


Query: 1   MIPKRVALYLPIIFKSLLQIPMSISRFLRFQLFREQPHVSSSASTVAPPQTSRGIVTLRK 60
           MIPKRVA YLPIIFKSLLQIPMSISRFLRFQLFR+QPH SSSASTVAPPQTSRGI TLRK
Sbjct: 13  MIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAPPQTSRGI-TLRK 72

Query: 61  DRRKRNSHIKPCRSNGGGGQTNSLKCDRIDPPRFLL 97
           DRRKR+SHIKPCRSNGGGGQTNSLKCDRIDPPRF+L
Sbjct: 73  DRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 107

[Close]

BLAST of MELO3C026143 vs. NCBI nr
Match: gi|778709895|ref|XP_004138359.2| (PREDICTED: uncharacterized protein LOC101208209 isoform X1 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 1.7e-39
Identity = 90/109 (82.57%), Postives = 93/109 (85.32%), Query Frame = 1


Query: 1   MIPKRVALYLPIIFKSLLQIPMSISRFLRFQLFREQPHVSSSASTVAP------------ 60
           MIPKRVA YLPIIFKSLLQIPMSISRFLRFQLFR+QPH SSSASTVAP            
Sbjct: 13  MIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAPDPKILMAANIQA 72

Query: 61  -PQTSRGIVTLRKDRRKRNSHIKPCRSNGGGGQTNSLKCDRIDPPRFLL 97
            PQTSRGI TLRKDRRKR+SHIKPCRSNGGGGQTNSLKCDRIDPPRF+L
Sbjct: 73  TPQTSRGI-TLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 120

The following BLAST results are available for this feature:

BLAST of MELO3C026143 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAN8_CUCSA	1.2e-39	82.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020180 PE=4 SV=1	[more]

BLAST of MELO3C026143 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778709899\|ref\|XP_011656472.1\|	2.8e-42	93.75	PREDICTED: uncharacterized protein LOC101208209 isoform X2 [Cucumis sativus]	[more]
gi\|778709895\|ref\|XP_004138359.2\|	1.7e-39	82.57	PREDICTED: uncharacterized protein LOC101208209 isoform X1 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU59444	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026143T2	MELO3C026143T2	mRNA
MELO3C026143T1	MELO3C026143T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU59444	MU59444	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C026143	Csa6G020180	Cucumber (Chinese Long) v2	cumeB418
MELO3C026143	CSPI06G02710	Wild cucumber (PI 183967)	cpimeB479
MELO3C026143	Cucsa.365720	Cucumber (Gy14) v1	cgymeB590
MELO3C026143	CsGy6G002820	Cucumber (Gy14) v2	cgybmeB421
MELO3C026143	CsaV3_6G002950	Cucumber (Chinese Long) v3	cucmeB489

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C026143	Wax gourd	mewgoB340
MELO3C026143	Cucumber (Gy14) v1	cgymeB592
MELO3C026143	Wild cucumber (PI 183967)	cpimeB468
MELO3C026143	Watermelon (97103) v1	mewmB304
MELO3C026143	Bottle gourd (USVL1VR-Ls)	lsimeB473
MELO3C026143	Cucumber (Gy14) v2	cgybmeB409
MELO3C026143	Cucumber (Chinese Long) v3	cucmeB478
MELO3C026143	Watermelon (97103) v2	mewmbB304