Csa6G020180 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G020180
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 2157202 .. 2158884 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGGAAAATAAAAAGTTAAATATTACATGGAGGATTCAACTGAAAAGAACAGGAAACCAGAGATGATTCCCAAGAGGGTTGCTTCCTATTTGCCTATCATCTTCAAGTCTCTCCTTCAAATTCCGATGAGCATCTCAAGATTTTTGAGGTTTCAACTTTTTAGACAGCAACCACATGATTCTTCCTCCGCTTCCACCGTCGCACCGGACCCCAAAATTCTCATGGCGGCCAATATCCAAGCTACTCCTCAAACTTCAAGGGGTATCACTTTAGTAAGTATCTCTTCCACTGATCATCTCTTCTGATTTTTATTTATCTTAAGTACAATAATCACACTCTTACAATTTGGACCTAAAGAAAACATTTCAATGTTTTCTCCACCAATTCATATGTAAATATTGAAATTACTCATTTTCAAATTCTAACTTCCTTTTTCTTTTTTAATTTTCAAGATACTTCATCTTACACTGCTAAACTTCTAATATAAACTCTCAAATTCCAACGCATATATATTCAATCCACAATTCAAAAGTTAACAAAACACTCTCTTTTGTTTAAATTTTAAAGGTAATCATAGGAATGACAAGAAATATTATAAGACTTTCTAATTTAGCAATATTTTTTGAAAATTTCAAATATAGCAATTTAAAGTTTGATTTTTGTTTTTATTACGCTAAATTCACTCTACTTAGTGTATTAGCTTTATATTAATTATATATCCCATATACTTTTATGTTTGGTGTATTGGTTAACCAACTGATATACTCTATATTTGATATATATATATATATTAATCAATCGATGAACTCTTATACTTTGTAGTACGTTAATTATATCATTGACTTAATTTGGATATTATGTGCAAAGTATCATAATTTAAACATAAGTCTAAGTTATTTTAAAATGAAAGAAAACAAAAAGTTATTTGCAGCTTGTGTACACTTAGATAGCTGCCCAATAAAATTTGTACACATGACATCGATGTATTTCTTTTTCAACACAAAAATTTGAATTGGTTTTATTTTGGTTTTACCGTGTATTAAATTAATTAATTAAGCTAAATTTGAAAGTTAAGGTCATATAATTGGATATATGAAATAAAATGGTAGAGGTGGTTCTCTCACATCGTCCAATGGAACGTTAAAGAAGCAACACTAGTAGCTAGATCTTCTCACATCTATACATCGTCAATAGTACTTTCTCTTCTACCGATCAATTTTTTTTAATTTTATCATATATGTTTTCTGTTTGTGTTTTTTTCTTCTAACTTTGTAGGGAATTCAAATGAATTGATTGGAGCGTTCAAGTCCCCCACAATCTTATGTTTTTTATATAATATATATAGAAAAACGTGTATTCATCTCACTGATCGAATATGTGTGCTGTTTTGCAGAGGAAGGATAGAAGGAAAAGGGATTCGCACATAAAACCATGCAGAAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCGTCCTTTAAATGATCATCATAATAATGGTCCTTAAAATCCCACTTCACATAATTTACTAGTTCTGTTGTATACATGCATTTGGATGTTCTCTCTCTCTCTTTTTATATGTTTTATAAATAACCTTTAAATTGAATGACTATTTTGAAGTGATTATATATGTGCTGTGATGTGTTTTTAAG

mRNA sequence

ATGGAGGATTCAACTGAAAAGAACAGGAAACCAGAGATGATTCCCAAGAGGGTTGCTTCCTATTTGCCTATCATCTTCAAGTCTCTCCTTCAAATTCCGATGAGCATCTCAAGATTTTTGAGGTTTCAACTTTTTAGACAGCAACCACATGATTCTTCCTCCGCTTCCACCGTCGCACCGGACCCCAAAATTCTCATGGCGGCCAATATCCAAGCTACTCCTCAAACTTCAAGGGGTATCACTTTAAGGAAGGATAGAAGGAAAAGGGATTCGCACATAAAACCATGCAGAAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCGTCCTTTAA

Coding sequence (CDS)

ATGGAGGATTCAACTGAAAAGAACAGGAAACCAGAGATGATTCCCAAGAGGGTTGCTTCCTATTTGCCTATCATCTTCAAGTCTCTCCTTCAAATTCCGATGAGCATCTCAAGATTTTTGAGGTTTCAACTTTTTAGACAGCAACCACATGATTCTTCCTCCGCTTCCACCGTCGCACCGGACCCCAAAATTCTCATGGCGGCCAATATCCAAGCTACTCCTCAAACTTCAAGGGGTATCACTTTAAGGAAGGATAGAAGGAAAAGGGATTCGCACATAAAACCATGCAGAAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCGTCCTTTAA

Protein sequence

MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAPDPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL*

Homology

[Close]

BLAST of Csa6G020180 vs. TrEMBL
Match: A0A0A0KAN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020180 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.4e-61
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP 60
           MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP
Sbjct: 1   MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP 60

Query: 61  DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 120
           DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL
Sbjct: 61  DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 120

[Close]

BLAST of Csa6G020180 vs. NCBI nr
Match: gi|778709895|ref|XP_004138359.2| (PREDICTED: uncharacterized protein LOC101208209 isoform X1 [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 3.4e-61
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP 60
           MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP
Sbjct: 1   MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP 60

Query: 61  DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 120
           DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL
Sbjct: 61  DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 120

[Close]

BLAST of Csa6G020180 vs. NCBI nr
Match: gi|778709899|ref|XP_011656472.1| (PREDICTED: uncharacterized protein LOC101208209 isoform X2 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 4.2e-51
Identity = 107/120 (89.17%), Postives = 107/120 (89.17%), Query Frame = 1


Query: 1   MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP 60
           MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP
Sbjct: 1   MEDSTEKNRKPEMIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP 60

Query: 61  DPKILMAANIQATPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 120
                        PQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL
Sbjct: 61  -------------PQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 107

The following BLAST results are available for this feature:

BLAST of Csa6G020180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAN8_CUCSA	2.4e-61	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020180 PE=4 SV=1	[more]

BLAST of Csa6G020180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778709895\|ref\|XP_004138359.2\|	3.4e-61	100.00	PREDICTED: uncharacterized protein LOC101208209 isoform X1 [Cucumis sativus]	[more]
gi\|778709899\|ref\|XP_011656472.1\|	4.2e-51	89.17	PREDICTED: uncharacterized protein LOC101208209 isoform X2 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU147059	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G020180.1	Csa6G020180.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU147059	CU147059	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G020180	MELO3C026143	Melon (DHL92) v3.5.1	cumeB418
Csa6G020180	MELO3C026143.2	Melon (DHL92) v3.6.1	cumedB455
Csa6G020180	CSPI06G02710	Wild cucumber (PI 183967)	cpicuB314
Csa6G020180	Cucsa.365720	Cucumber (Gy14) v1	cgycuB511
Csa6G020180	CsGy6G002820	Cucumber (Gy14) v2	cgybcuB282

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G020180	Watermelon (Charleston Gray)	cuwcgB500
Csa6G020180	Watermelon (Charleston Gray)	cuwcgB513
Csa6G020180	Watermelon (97103) v1	cuwmB462
Csa6G020180	Watermelon (97103) v1	cuwmB463
Csa6G020180	Watermelon (97103) v1	cuwmB475
Csa6G020180	Bottle gourd (USVL1VR-Ls)	culsiB471
Csa6G020180	Watermelon (97103) v2	cuwmbB490
Csa6G020180	Watermelon (97103) v2	cuwmbB504
Csa6G020180	Wax gourd	cuwgoB589