Cucsa.334870 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.334870
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ethylene-responsive transcription factor
Location	scaffold03312 : 332017 .. 332574 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATTGACTTCCAGTCGCCGGAGATCCACCGCGGAGCCACCGCCTCCATAATAAAATCAACCAAATTCAAAGGCAGAAACAGAAGTAACAATAATGGCAACAAGTTCGTCGGAGTCCGGCAACGGCCGTCCGGCAGATGGGTAGCGGAAATCAAAGACACAACGAAGAAAATTCGAATGTGGCTCGGAACTTTCGAGACCGCCGAAGAAGCCGCCCGTGCTTACGATGAAGCCGCTTGTCTTCTTCGAGGTTCGAACACAAGAACCAATTTCATTCCTCAAATCTCAACAAATTCCCCAATCGCTTCTCGGATTCGTTCTCTCTTAAACaCCAAAAAAACCGTAAATCGAAAACCCCCGGAAAAACCCACCACCTCCGCCGCCGTCTCTGCCGGTTCCGCCGTCGTGGACCCGTCAATTAAAGACGATGGATTGTTCGAGGGAGCGTATAAACCGGATATGACTAATTGTTTGGAAGAAAGAGAGGTGAGTTCTTGTGATTCGTGTTGCTCTGAATCTTGTGAATTGGGGGTTTCATTGGCGGAGAATGGGACA

mRNA sequence

ATGGAAATTGACTTCCAGTCGCCGGAGATCCACCGCGGAGCCACCGCCTCCATAATAAAATCAACCAAATTCAAAGGCAGAAACAGAAGTAACAATAATGGCAACAAGTTCGTCGGAGTCCGGCAACGGCCGTCCGGCAGATGGGTAGCGGAAATCAAAGACACAACGAAGAAAATTCGAATGTGGCTCGGAACTTTCGAGACCGCCGAAGAAGCCGCCCGTGCTTACGATGAAGCCGCTTGTCTTCTTCGAGGTTCGAACACAAGAACCAATTTCATTCCTCAAATCTCAACAAATTCCCCAATCGCTTCTCGGATTCGTTCTCTCTTAAACACCAAAAAAACCGTAAATCGAAAACCCCCGGAAAAACCCACCACCTCCGCCGCCGTCTCTGCCGGTTCCGCCGTCGTGGACCCGTCAATTAAAGACGATGGATTGTTCGAGGGAGCGTATAAACCGGATATGACTAATTGTTTGGAAGAAAGAGAGGTGAGTTCTTGTGATTCGTGTTGCTCTGAATCTTGTGAATTGGGGGTTTCATTGGCGGAGAATGGGACA

Coding sequence (CDS)

ATGGAAATTGACTTCCAGTCGCCGGAGATCCACCGCGGAGCCACCGCCTCCATAATAAAATCAACCAAATTCAAAGGCAGAAACAGAAGTAACAATAATGGCAACAAGTTCGTCGGAGTCCGGCAACGGCCGTCCGGCAGATGGGTAGCGGAAATCAAAGACACAACGAAGAAAATTCGAATGTGGCTCGGAACTTTCGAGACCGCCGAAGAAGCCGCCCGTGCTTACGATGAAGCCGCTTGTCTTCTTCGAGGTTCGAACACAAGAACCAATTTCATTCCTCAAATCTCAACAAATTCCCCAATCGCTTCTCGGATTCGTTCTCTCTTAAACaCCAAAAAAACCGTAAATCGAAAACCCCCGGAAAAACCCACCACCTCCGCCGCCGTCTCTGCCGGTTCCGCCGTCGTGGACCCGTCAATTAAAGACGATGGATTGTTCGAGGGAGCGTATAAACCGGATATGACTAATTGTTTGGAAGAAAGAGAGGTGAGTTCTTGTGATTCGTGTTGCTCTGAATCTTGTGAATTGGGGGTTTCATTGGCGGAGAATGGGACA

Protein sequence

MEIDFQSPEIHRGATASIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKPPEKPTTSAAVSAGSAVVDPSIKDDGLFEGAYKPDMTNCLEEREVSSCDSCCSESCELGVSLAENGT

Homology

[Close]

BLAST of Cucsa.334870 vs. Swiss-Prot
Match: RA211_ARATH (Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.1e-32
Identity = 69/107 (64.49%), Postives = 85/107 (79.44%), Query Frame = 1


Query: 23  KFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACL 82
           K K + +S  N  KFVGVRQRPSG+WVAEIKDTT+KIRMWLGTFETAEEAARAYDEAACL
Sbjct: 8   KQKTKEKSKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACL 67

Query: 83  LRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKPPE--KPTTS 128
           LRGSNTRTNF      NS ++ +IR+LL+ K+++ ++  +  KP +S
Sbjct: 68  LRGSNTRTNFANHFPNNSQLSLKIRNLLHQKQSMKQQQQQQHKPVSS 114

[Close]

BLAST of Cucsa.334870 vs. Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.1e-17
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 1


Query: 36  KFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQ 95
           KF GVRQRP G+W AEI+D  K++R+WLGT+ TAEEAA  YD AA  LRG +  TNF   
Sbjct: 121 KFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVT 180

Query: 96  ISTNSPIASRIRSLLNTKKTVNRKPPEKPTTSAAVSAGSA 136
            +T +   +   S +  KK  N K  +  T S+++S  S+
Sbjct: 181 PTTATEKKAPPPSPVKKKKKKNNKSKKSVTASSSISRSSS 220

[Close]

BLAST of Cucsa.334870 vs. Swiss-Prot
Match: LEP_ARATH (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.9e-17
Identity = 60/175 (34.29%), Postives = 91/175 (52.00%), Query Frame = 1


Query: 19  IKSTKFKGRNRSNNN-GNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYD 78
           + +T  K + + ++  G +F+GVR+RP GR+ AEI+D T K R WLGTF+TAEEAA AYD
Sbjct: 1   MNTTSSKSKKKQDDQVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYD 60

Query: 79  EAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKPPEKPTTSAAV------- 138
            AA  +RG+  RTNF   + ++ P +S + S+++        PP  P ++  V       
Sbjct: 61  RAARSMRGTRARTNF---VYSDMPPSSSVTSIVSPDDPPPPPPPPAPPSNDPVDYMMMFN 120

Query: 139 ---SAGSAVVDPSIK--DDGLFEGA-------YKPDMTNCLEEREVSSCDSCCSE 174
              S  S ++ P     D  +F G+       Y  D +N L        +SC S+
Sbjct: 121 QYSSTDSPMLQPHCDQVDSYMFGGSQSSNSYCYSNDSSNELPPLPSDLSNSCYSQ 172

[Close]

BLAST of Cucsa.334870 vs. Swiss-Prot
Match: ABI4_ARATH (Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana GN=ABI4 PE=1 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 5.1e-16
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 1


Query: 23  KFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACL 82
           K KG+   +N+  ++ GVRQR  G+WVAEI++  K+ R WLGTF TAE+AARAYD AA  
Sbjct: 41  KRKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAVY 100

Query: 83  LRGSNTRTNFIP----QISTNSPIASRIRSLLNTKKTVNRKPPEKPTTSAAVSAGSAVVD 140
           L GS  + N  P     +S++S   S   S   +  +     P  P  +AA   G A   
Sbjct: 101 LYGSRAQLNLTPSSPSSVSSSSSSVSAASSPSTSSSSTQTLRPLLPRPAAATVGGGANFG 160

[Close]

BLAST of Cucsa.334870 vs. Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.7e-16
Identity = 50/127 (39.37%), Postives = 70/127 (55.12%), Query Frame = 1


Query: 17  SIIKSTKFKG---RNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAA 76
           S I +  F G   ++      N+F G+RQRP G+W AEI+D  K +R+WLGTF +AEEAA
Sbjct: 97  STITTAGFDGPAAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAA 156

Query: 77  RAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKPPEKPTTSAAVSAG 136
           RAYD  A  +RG   + NF    +T     +   +    K +V +KP  KP  +   +A 
Sbjct: 157 RAYDAEARRIRGKKAKVNFPEAPTTAQKRRAGSTTAKAPKSSVEQKPTVKPAFNNLANA- 216

Query: 137 SAVVDPS 141
           +A V PS
Sbjct: 217 NAFVYPS 222

[Close]

BLAST of Cucsa.334870 vs. TrEMBL
Match: A0A0A0L1B8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G192030 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 2.8e-101
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1


Query: 1   MEIDFQSPEIHRGATASIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIR 60
           MEIDFQSPEIHRGATASIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIR
Sbjct: 1   MEIDFQSPEIHRGATASIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIR 60

Query: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKP 120
           MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKP
Sbjct: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKP 120

Query: 121 PEKPTTSAAVSAGSAVVDPSIKDDGLFEGAYKPDMTNCLEEREVSSCDSCCSESCELGVS 180
           PEKPTTSAAVSAGSAVVDPSIKDDGLFEGAYKPDMTNCLEEREVSSCDSCCSESCELGVS
Sbjct: 121 PEKPTTSAAVSAGSAVVDPSIKDDGLFEGAYKPDMTNCLEEREVSSCDSCCSESCELGVS 180

Query: 181 LAENGT 187
           LAENGT
Sbjct: 181 LAENGT 186

[Close]

BLAST of Cucsa.334870 vs. TrEMBL
Match: A0A067L5C6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02710 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.5e-49
Identity = 106/188 (56.38%), Postives = 131/188 (69.68%), Query Frame = 1


Query: 1   MEIDFQSPEIHRGATASIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIR 60
           MEI FQ  + H+ ++  + K++KFKGR+R NNN NKFVGVRQRPSGRWVAEIKDTT+KIR
Sbjct: 1   MEIQFQQQKQHKSSSVPVNKTSKFKGRHRPNNNNNKFVGVRQRPSGRWVAEIKDTTQKIR 60

Query: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKP 120
           MWLGTFETAEEAARAYDEAACLLRGSNTRTNFI Q+S +SP+ASRIR+LL  KK   ++ 
Sbjct: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFITQVSLDSPLASRIRNLLKNKKAGKKQQ 120

Query: 121 PEK-------------PTTSAAVSAGSAVVDPS------IKDDGLFEGAYKPDMTNCLEE 170
            E+              T++   S+ S+ +D S      + D   F+  YKPDM+NC EE
Sbjct: 121 REEENLEVSTPSNSTVTTSTCTSSSSSSSIDNSTPSGEIVNDTQFFDDVYKPDMSNCREE 180

[Close]

BLAST of Cucsa.334870 vs. TrEMBL
Match: D7TI77_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07250 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 9.3e-49
Identity = 113/184 (61.41%), Postives = 134/184 (72.83%), Query Frame = 1


Query: 1   MEIDFQSPEIHRGATASIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIR 60
           MEI FQ P+    AT    K  KFKGRNRSN+N NKFVGVRQRPSGRWVAEIKDTT+KIR
Sbjct: 1   MEIQFQQPKGAIPAT----KVRKFKGRNRSNSN-NKFVGVRQRPSGRWVAEIKDTTQKIR 60

Query: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKP 120
           MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIP +S+NSP+ASRIR+LL+ KK    K 
Sbjct: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPNVSSNSPLASRIRTLLDNKK--GAKQ 120

Query: 121 PEK--------------PTTSAAVSAGS-AVVDPSIKDDGLFEGAYKPDMTNCLEEREVS 170
           P++              P  S+  S+GS ++    I++  LF+ AYKPD++NC EE E+ 
Sbjct: 121 PKQTSVDSSNISTTIVTPCASSCTSSGSNSLSSEKIQETQLFDDAYKPDLSNCSEEVELG 177

[Close]

BLAST of Cucsa.334870 vs. TrEMBL
Match: B9I5W8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s05330g PE=4 SV=2)

HSP 1 Score: 198.4 bits (503), Expect = 7.9e-48
Identity = 108/192 (56.25%), Postives = 133/192 (69.27%), Query Frame = 1


Query: 1   MEIDFQSPEIHRGATASIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIR 60
           MEI FQ  + H+ A   + K++KFKGR R N+N NKFVGVRQR SGRWVAEIKDTT+KIR
Sbjct: 1   MEIHFQQQKQHKNACIPVSKASKFKGRGRPNSNSNKFVGVRQRTSGRWVAEIKDTTQKIR 60

Query: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKP 120
           MWLGTFETAEEAARAYDEAACLLRGSNTRTNFI  +S +SP+ASRIR+LLN K+   ++ 
Sbjct: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSVDSPLASRIRNLLNNKRRDQQQH 120

Query: 121 PEKP-------------------TTSAAVSAGSAVVD---PSIKD-DGLFEGAYKPDMTN 170
            E+                    TTS++ S+ S + D    SI + D LF+ AYKPD+ N
Sbjct: 121 SEEETAEASTPPTSTITTTSSTITTSSSSSSSSGMSDNYSSSIHETDHLFDDAYKPDLRN 180

[Close]

BLAST of Cucsa.334870 vs. TrEMBL
Match: A0A0B2RSB3_GLYSO (Ethylene-responsive transcription factor RAP2-11 OS=Glycine soja GN=glysoja_011240 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.0e-47
Identity = 109/188 (57.98%), Postives = 129/188 (68.62%), Query Frame = 1


Query: 1   MEIDFQSPEI-HRGATASIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKI 60
           MEI FQ P + H+ +  +I K  KFKGR+R NNN NKFVGVRQRPSGRWVAEIKDTT+KI
Sbjct: 1   MEIQFQQPNLQHQKSGIAITKGGKFKGRSR-NNNTNKFVGVRQRPSGRWVAEIKDTTQKI 60

Query: 61  RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTV--- 120
           RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFI  +S +SP+ASRIR+LLN +K +   
Sbjct: 61  RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGIKKE 120

Query: 121 --------NRKPPEKPTTSAAVSAGSAVVDPSIKDD-------------GLFEGAYKPDM 164
                   N   P   TTS+A S G++    +  D+              LF+ AYKPD+
Sbjct: 121 EDANANANNAPAPRVSTTSSATSTGTSSNSSNGNDNNDQSLSTVTTQSSNLFDDAYKPDL 180

[Close]

BLAST of Cucsa.334870 vs. TAIR10
Match: AT5G19790.1 (AT5G19790.1 related to AP2 11)

HSP 1 Score: 139.0 bits (349), Expect = 2.9e-33
Identity = 69/107 (64.49%), Postives = 85/107 (79.44%), Query Frame = 1


Query: 23  KFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACL 82
           K K + +S  N  KFVGVRQRPSG+WVAEIKDTT+KIRMWLGTFETAEEAARAYDEAACL
Sbjct: 8   KQKTKEKSKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACL 67

Query: 83  LRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKPPE--KPTTS 128
           LRGSNTRTNF      NS ++ +IR+LL+ K+++ ++  +  KP +S
Sbjct: 68  LRGSNTRTNFANHFPNNSQLSLKIRNLLHQKQSMKQQQQQQHKPVSS 114

[Close]

BLAST of Cucsa.334870 vs. TAIR10
Match: AT4G23750.1 (AT4G23750.1 cytokinin response factor 2)

HSP 1 Score: 89.0 bits (219), Expect = 3.4e-18
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 1


Query: 36  KFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQ 95
           KF GVRQRP G+W AEI+D  K++R+WLGT+ TAEEAA  YD AA  LRG +  TNF   
Sbjct: 121 KFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVT 180

Query: 96  ISTNSPIASRIRSLLNTKKTVNRKPPEKPTTSAAVSAGSA 136
            +T +   +   S +  KK  N K  +  T S+++S  S+
Sbjct: 181 PTTATEKKAPPPSPVKKKKKKNNKSKKSVTASSSISRSSS 220

[Close]

BLAST of Cucsa.334870 vs. TAIR10
Match: AT5G13910.1 (AT5G13910.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 88.6 bits (218), Expect = 4.5e-18
Identity = 60/175 (34.29%), Postives = 91/175 (52.00%), Query Frame = 1


Query: 19  IKSTKFKGRNRSNNN-GNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYD 78
           + +T  K + + ++  G +F+GVR+RP GR+ AEI+D T K R WLGTF+TAEEAA AYD
Sbjct: 1   MNTTSSKSKKKQDDQVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYD 60

Query: 79  EAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKPPEKPTTSAAV------- 138
            AA  +RG+  RTNF   + ++ P +S + S+++        PP  P ++  V       
Sbjct: 61  RAARSMRGTRARTNF---VYSDMPPSSSVTSIVSPDDPPPPPPPPAPPSNDPVDYMMMFN 120

Query: 139 ---SAGSAVVDPSIK--DDGLFEGA-------YKPDMTNCLEEREVSSCDSCCSE 174
              S  S ++ P     D  +F G+       Y  D +N L        +SC S+
Sbjct: 121 QYSSTDSPMLQPHCDQVDSYMFGGSQSSNSYCYSNDSSNELPPLPSDLSNSCYSQ 172

[Close]

BLAST of Cucsa.334870 vs. TAIR10
Match: AT2G40220.1 (AT2G40220.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-17
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 1


Query: 23  KFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACL 82
           K KG+   +N+  ++ GVRQR  G+WVAEI++  K+ R WLGTF TAE+AARAYD AA  
Sbjct: 41  KRKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAVY 100

Query: 83  LRGSNTRTNFIP----QISTNSPIASRIRSLLNTKKTVNRKPPEKPTTSAAVSAGSAVVD 140
           L GS  + N  P     +S++S   S   S   +  +     P  P  +AA   G A   
Sbjct: 101 LYGSRAQLNLTPSSPSSVSSSSSSVSAASSPSTSSSSTQTLRPLLPRPAAATVGGGANFG 160

[Close]

BLAST of Cucsa.334870 vs. TAIR10
Match: AT5G18560.1 (AT5G18560.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-16
Identity = 49/115 (42.61%), Postives = 67/115 (58.26%), Query Frame = 1


Query: 10  IHRGATASIIKST---KFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTF 69
           IH+  +A+   +T   + +GR        +F+GVR+RP GR+ AEI+D T K R WLGTF
Sbjct: 25  IHQNTSANTTTTTTTGERRGRRSKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTF 84

Query: 70  ETAEEAARAYDEAACLLRGSNTRTNF------IPQISTNSPIASRIRSLLNTKKT 116
           +TA EAA AYD AA  +RG+  RTNF      +  I TN  + S I S  N  ++
Sbjct: 85  DTAHEAALAYDRAALSMRGTQARTNFVYTPTDVHTILTNPNLHSLIVSPYNNNQS 139

[Close]

BLAST of Cucsa.334870 vs. NCBI nr
Match: gi|449462796|ref|XP_004149126.1| (PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Cucumis sativus])

HSP 1 Score: 375.9 bits (964), Expect = 4.0e-101
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1


Query: 1   MEIDFQSPEIHRGATASIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIR 60
           MEIDFQSPEIHRGATASIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIR
Sbjct: 1   MEIDFQSPEIHRGATASIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIR 60

Query: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKP 120
           MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKP
Sbjct: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKP 120

Query: 121 PEKPTTSAAVSAGSAVVDPSIKDDGLFEGAYKPDMTNCLEEREVSSCDSCCSESCELGVS 180
           PEKPTTSAAVSAGSAVVDPSIKDDGLFEGAYKPDMTNCLEEREVSSCDSCCSESCELGVS
Sbjct: 121 PEKPTTSAAVSAGSAVVDPSIKDDGLFEGAYKPDMTNCLEEREVSSCDSCCSESCELGVS 180

Query: 181 LAENGT 187
           LAENGT
Sbjct: 181 LAENGT 186

[Close]

BLAST of Cucsa.334870 vs. NCBI nr
Match: gi|700198773|gb|KGN53931.1| (hypothetical protein Csa_4G192030 [Cucumis sativus])

HSP 1 Score: 375.9 bits (964), Expect = 4.0e-101
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1


Query: 1   MEIDFQSPEIHRGATASIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIR 60
           MEIDFQSPEIHRGATASIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIR
Sbjct: 1   MEIDFQSPEIHRGATASIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIR 60

Query: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKP 120
           MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKP
Sbjct: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKP 120

Query: 121 PEKPTTSAAVSAGSAVVDPSIKDDGLFEGAYKPDMTNCLEEREVSSCDSCCSESCELGVS 180
           PEKPTTSAAVSAGSAVVDPSIKDDGLFEGAYKPDMTNCLEEREVSSCDSCCSESCELGVS
Sbjct: 121 PEKPTTSAAVSAGSAVVDPSIKDDGLFEGAYKPDMTNCLEEREVSSCDSCCSESCELGVS 180

Query: 181 LAENGT 187
           LAENGT
Sbjct: 181 LAENGT 186

[Close]

BLAST of Cucsa.334870 vs. NCBI nr
Match: gi|659082707|ref|XP_008441991.1| (PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Cucumis melo])

HSP 1 Score: 353.6 bits (906), Expect = 2.1e-94
Identity = 179/187 (95.72%), Postives = 179/187 (95.72%), Query Frame = 1


Query: 1   MEIDFQSPEIHRGATA-SIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKI 60
           MEIDFQS EIH GATA SIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKI
Sbjct: 1   MEIDFQSSEIHGGATASSIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKI 60

Query: 61  RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRK 120
           RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRK
Sbjct: 61  RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRK 120

Query: 121 PPEKPTTSAAVSAGSAVVDPSIKDDGLFEGAYKPDMTNCLEEREVSSCDSCCSESCELGV 180
           P E PTTS A SAGSAVV PSIKDDGLFEGAYKPDMTNCLEEREVSSCDSCCSESCELGV
Sbjct: 121 PLETPTTSVAASAGSAVVGPSIKDDGLFEGAYKPDMTNCLEEREVSSCDSCCSESCELGV 180

Query: 181 SLAENGT 187
           SLAENGT
Sbjct: 181 SLAENGT 187

[Close]

BLAST of Cucsa.334870 vs. NCBI nr
Match: gi|802585450|ref|XP_012070434.1| (PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas])

HSP 1 Score: 203.4 bits (516), Expect = 3.5e-49
Identity = 106/188 (56.38%), Postives = 131/188 (69.68%), Query Frame = 1


Query: 1   MEIDFQSPEIHRGATASIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIR 60
           MEI FQ  + H+ ++  + K++KFKGR+R NNN NKFVGVRQRPSGRWVAEIKDTT+KIR
Sbjct: 1   MEIQFQQQKQHKSSSVPVNKTSKFKGRHRPNNNNNKFVGVRQRPSGRWVAEIKDTTQKIR 60

Query: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKP 120
           MWLGTFETAEEAARAYDEAACLLRGSNTRTNFI Q+S +SP+ASRIR+LL  KK   ++ 
Sbjct: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFITQVSLDSPLASRIRNLLKNKKAGKKQQ 120

Query: 121 PEK-------------PTTSAAVSAGSAVVDPS------IKDDGLFEGAYKPDMTNCLEE 170
            E+              T++   S+ S+ +D S      + D   F+  YKPDM+NC EE
Sbjct: 121 REEENLEVSTPSNSTVTTSTCTSSSSSSSIDNSTPSGEIVNDTQFFDDVYKPDMSNCREE 180

[Close]

BLAST of Cucsa.334870 vs. NCBI nr
Match: gi|225441591|ref|XP_002281619.1| (PREDICTED: ethylene-responsive transcription factor RAP2-11 [Vitis vinifera])

HSP 1 Score: 201.4 bits (511), Expect = 1.3e-48
Identity = 113/184 (61.41%), Postives = 134/184 (72.83%), Query Frame = 1


Query: 1   MEIDFQSPEIHRGATASIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIR 60
           MEI FQ P+    AT    K  KFKGRNRSN+N NKFVGVRQRPSGRWVAEIKDTT+KIR
Sbjct: 1   MEIQFQQPKGAIPAT----KVRKFKGRNRSNSN-NKFVGVRQRPSGRWVAEIKDTTQKIR 60

Query: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKP 120
           MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIP +S+NSP+ASRIR+LL+ KK    K 
Sbjct: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPNVSSNSPLASRIRTLLDNKK--GAKQ 120

Query: 121 PEK--------------PTTSAAVSAGS-AVVDPSIKDDGLFEGAYKPDMTNCLEEREVS 170
           P++              P  S+  S+GS ++    I++  LF+ AYKPD++NC EE E+ 
Sbjct: 121 PKQTSVDSSNISTTIVTPCASSCTSSGSNSLSSEKIQETQLFDDAYKPDLSNCSEEVELG 177

The following BLAST results are available for this feature:

BLAST of Cucsa.334870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RA211_ARATH	5.1e-32	64.49	Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2...	[more]
CRF2_ARATH	6.1e-17	46.00	Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE...	[more]
LEP_ARATH	7.9e-17	34.29	Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2...	[more]
ABI4_ARATH	5.1e-16	40.50	Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana GN=ABI4 PE...	[more]
ERF1_ORYSJ	6.7e-16	39.37	Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=ER...	[more]

BLAST of Cucsa.334870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1B8_CUCSA	2.8e-101	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G192030 PE=4 SV=1	[more]
A0A067L5C6_JATCU	2.5e-49	56.38	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02710 PE=4 SV=1	[more]
D7TI77_VITVI	9.3e-49	61.41	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07250 PE=4 SV=...	[more]
B9I5W8_POPTR	7.9e-48	56.25	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s05330g PE=4 SV=2	[more]
A0A0B2RSB3_GLYSO	3.0e-47	57.98	Ethylene-responsive transcription factor RAP2-11 OS=Glycine soja GN=glysoja_0112...	[more]

BLAST of Cucsa.334870 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19790.1	2.9e-33	64.49	related to AP2 11	[more]
AT4G23750.1	3.4e-18	46.00	cytokinin response factor 2	[more]
AT5G13910.1	4.5e-18	34.29	Integrase-type DNA-binding superfamily protein	[more]
AT2G40220.1	2.9e-17	40.50	Integrase-type DNA-binding superfamily protein	[more]
AT5G18560.1	1.1e-16	42.61	Integrase-type DNA-binding superfamily protein	[more]

BLAST of Cucsa.334870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462796\|ref\|XP_004149126.1\|	4.0e-101	100.00	PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Cucumis sativu...	[more]
gi\|700198773\|gb\|KGN53931.1\|	4.0e-101	100.00	hypothetical protein Csa_4G192030 [Cucumis sativus]	[more]
gi\|659082707\|ref\|XP_008441991.1\|	2.1e-94	95.72	PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Cucumis melo]	[more]
gi\|802585450\|ref\|XP_012070434.1\|	3.5e-49	56.38	PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curca...	[more]
gi\|225441591\|ref\|XP_002281619.1\|	1.3e-48	61.41	PREDICTED: ethylene-responsive transcription factor RAP2-11 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom
IPR016177	DNA-bd_dom_sf
IPR017392	AP2/ERF-transcript_factor

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.334870.1	Cucsa.334870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 37..48 score: 5.1E-8coord: 59..75 score: 5.
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 36..92 score: 2.2
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 36..85 score: 1.7
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 36..99 score: 1.3
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 36..93 score: 19
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 36..93 score: 1.11
IPR017392	AP2/ERF transcription factor ERF/PTI6	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 35..174 score: 4.9
None	No IPR available	PANTHER	PTHR31194:SF5	SUBFAMILY NOT NAMED	coord: 35..174 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.334870	Cla012123	Watermelon (97103) v1	cgywmB604
Cucsa.334870	Csa4G192030	Cucumber (Chinese Long) v2	cgycuB473
Cucsa.334870	MELO3C008810	Melon (DHL92) v3.5.1	cgymeB547
Cucsa.334870	ClCG04G005390	Watermelon (Charleston Gray)	cgywcgB575
Cucsa.334870	CSPI04G11180	Wild cucumber (PI 183967)	cgycpiB499
Cucsa.334870	CmaCh03G002370	Cucurbita maxima (Rimu)	cgycmaB0918
Cucsa.334870	CmaCh07G011600	Cucurbita maxima (Rimu)	cgycmaB0919
Cucsa.334870	CmoCh07G012070	Cucurbita moschata (Rifu)	cgycmoB0918
Cucsa.334870	CmoCh03G002510	Cucurbita moschata (Rifu)	cgycmoB0917
Cucsa.334870	Lsi01G016730	Bottle gourd (USVL1VR-Ls)	cgylsiB544
Cucsa.334870	Cp4.1LG10g07100	Cucurbita pepo (Zucchini)	cgycpeB0874
Cucsa.334870	MELO3C008810.2	Melon (DHL92) v3.6.1	cgymedB548
Cucsa.334870	CsaV3_4G012210	Cucumber (Chinese Long) v3	cgycucB516
Cucsa.334870	Cla97C04G071960	Watermelon (97103) v2	cgywmbB579
Cucsa.334870	Bhi03G001845	Wax gourd	cgywgoB671
Cucsa.334870	Carg19567	Silver-seed gourd	carcgyB0703

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None