Cucsa.271060 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.271060
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Transmembrane protein, putative
Location	scaffold02500 : 10009 .. 10368 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTTGGGGTCGGCGCTATGTCAAGGAGGAGCCGGTTTTCTTCCTATGACCGGTGGCTGGCAGTAGGCCTCGGCCTTCTCGCGGTGGTTTCACCGCTCTATATCGATCGGAGACCGAGCATCGAGGAGTTGGAAGAGGAGGAATCATCCATTCATCTTGGCTTCTGGTTGCCTGCTCTTCTCATGATCTTGATCTTCATTATTGCTGGAGTTCTTCACTTGGAACAGAGATGTGCCAGATTTGACCCTTATTGGATCCACAGAGTTGGTGGTTCTTCTTGTGGCATATTCATCATTCTTCTGCTTCTTGCATTTGTTTTAAAGTGTAAAGCTTCTTTAATGTTTTGGGAGTCTTAG

mRNA sequence

ATGGAGGTTGGGGTCGGCGCTATGTCAAGGAGGAGCCGGTTTTCTTCCTATGACCGGTGGCTGGCAGTAGGCCTCGGCCTTCTCGCGGTGGTTTCACCGCTCTATATCGATCGGAGACCGAGCATCGAGGAGTTGGAAGAGGAGGAATCATCCATTCATCTTGGCTTCTGGTTGCCTGCTCTTCTCATGATCTTGATCTTCATTATTGCTGGAGTTCTTCACTTGGAACAGAGATGTGCCAGATTTGACCCTTATTGGATCCACAGAGTTGGTGGTTCTTCTTGTGGCATATTCATCATTCTTCTGCTTCTTGCATTTGTTTTAAAGTGTAAAGCTTCTTTAATGTTTTGGGAGTCTTAG

Coding sequence (CDS)

ATGGAGGTTGGGGTCGGCGCTATGTCAAGGAGGAGCCGGTTTTCTTCCTATGACCGGTGGCTGGCAGTAGGCCTCGGCCTTCTCGCGGTGGTTTCACCGCTCTATATCGATCGGAGACCGAGCATCGAGGAGTTGGAAGAGGAGGAATCATCCATTCATCTTGGCTTCTGGTTGCCTGCTCTTCTCATGATCTTGATCTTCATTATTGCTGGAGTTCTTCACTTGGAACAGAGATGTGCCAGATTTGACCCTTATTGGATCCACAGAGTTGGTGGTTCTTCTTGTGGCATATTCATCATTCTTCTGCTTCTTGCATTTGTTTTAAAGTGTAAAGCTTCTTTAATGTTTTGGGAGTCTTAG

Protein sequence

MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPALLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES*

Homology

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BLAST of Cucsa.271060 vs. TrEMBL
Match: A0A0A0L2W6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G648010 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.2e-61
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1


Query: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60
           MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 120
           LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES
Sbjct: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of Cucsa.271060 vs. TrEMBL
Match: F6H2S6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g01940 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-27
Identity = 68/109 (62.39%), Postives = 83/109 (76.15%), Query Frame = 1


Query: 6   GAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPALLMIL 65
           GA  R +RFSSY+R  A+GL LLAVVSPLYIDRRP ++  E +   I L  WLP LLM+L
Sbjct: 4   GATYRSARFSSYERLGAIGLALLAVVSPLYIDRRPVLDP-ELDVQPISLVSWLPLLLMVL 63

Query: 66  IFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASL 115
           IF I    +L++R +RFDPYWIHRVGGSS GI +IL++LA VLKCKAS+
Sbjct: 64  IFAITLSQYLDRRFSRFDPYWIHRVGGSSVGIIVILMVLALVLKCKASI 111

[Close]

BLAST of Cucsa.271060 vs. TrEMBL
Match: B9RQX2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0707450 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.7e-27
Identity = 66/105 (62.86%), Postives = 82/105 (78.10%), Query Frame = 1


Query: 9   SRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPALLMILIFI 68
           +R  R SSY++++ +GLGLLAVVSPLYI+RRP+  +LE EE  I L  WLP LL++LI  
Sbjct: 77  TRSRRISSYEKFVGLGLGLLAVVSPLYINRRPN-SDLELEEQPIDLSSWLPLLLLLLILA 136

Query: 69  IAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKAS 114
           IA  L+L+Q   RFDPYWIHRVGGSS GI +IL++LA VLKCKAS
Sbjct: 137 IALSLYLDQSLTRFDPYWIHRVGGSSGGIIVILVILALVLKCKAS 180

[Close]

BLAST of Cucsa.271060 vs. TrEMBL
Match: B9RQX2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0707450 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-07
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1


Query: 10 RRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPALLMILIFII 69
          R SR SSY++ + V LGLLAVVSPLYI+R P I+  E +E  I+L  WLP L ++LIF I
Sbjct: 8  RNSRSSSYEKLVFVCLGLLAVVSPLYINRAPVIDP-EVDEQPINLAPWLPLLPLVLIFAI 67

Query: 70 AGVLHLEQRCAR 82
          A  L+ ++   R
Sbjct: 68 ALSLYTDRGFTR 78

HSP 2 Score: 122.9 bits (307), Expect = 2.7e-25
Identity = 64/110 (58.18%), Postives = 79/110 (71.82%), Query Frame = 1


Query: 5   VGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPALLMI 64
           +G  SR+SRFSSY+R  A+ L +LAV SPLYID RP   ELE+EE S+   FWLP LL +
Sbjct: 3   LGDSSRKSRFSSYERVAAISLVVLAVASPLYIDHRPE-SELEDEEQSLSFAFWLPLLLFV 62

Query: 65  LIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASL 115
           LI  IA    L++   RFD +WIHRVGGSS GI +IL++L  VLKCKAS+
Sbjct: 63  LIIAIALSAFLDRNFTRFDRHWIHRVGGSSGGIVLILVVLFLVLKCKASV 111

[Close]

BLAST of Cucsa.271060 vs. TrEMBL
Match: I1MX79_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G225900 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.7e-25
Identity = 64/110 (58.18%), Postives = 79/110 (71.82%), Query Frame = 1


Query: 5   VGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPALLMI 64
           +G  SR+SRFSSY+R  A+ L +LAV SPLYID RP   ELE+EE S+   FWLP LL +
Sbjct: 3   LGDSSRKSRFSSYERVAAISLVVLAVASPLYIDHRPE-SELEDEEQSLSFAFWLPLLLFV 62

Query: 65  LIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASL 115
           LI  IA    L++   RFD +WIHRVGGSS GI +IL++L  VLKCKAS+
Sbjct: 63  LIIAIALSAFLDRNFTRFDRHWIHRVGGSSGGIVLILVVLFLVLKCKASV 111

[Close]

BLAST of Cucsa.271060 vs. TAIR10
Match: AT5G21910.1 (AT5G21910.1 unknown protein)

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-20
Identity = 56/113 (49.56%), Postives = 72/113 (63.72%), Query Frame = 1


Query: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60
           ME G  +     RF++  + LA+ L +LAV+SPLYIDR  S E+LEEEE      F    
Sbjct: 1   METG-SSSPMMGRFTTSRKLLAISLSVLAVLSPLYIDRL-SEEDLEEEEELFSFMFSFSL 60

Query: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKAS 114
           LL++LI  IA  L+ +    RFDPYWIHR+ GS  G+ +IL+LL FVL CKAS
Sbjct: 61  LLLLLILAIALSLYSDPSLTRFDPYWIHRLCGSFGGLLVILILLVFVLICKAS 111

[Close]

BLAST of Cucsa.271060 vs. NCBI nr
Match: gi|778696747|ref|XP_011654202.1| (PREDICTED: uncharacterized protein LOC105435317 [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 7.5e-61
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1


Query: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60
           MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 120
           LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES
Sbjct: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of Cucsa.271060 vs. NCBI nr
Match: gi|659104041|ref|XP_008452787.1| (PREDICTED: uncharacterized protein LOC103493702 [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 2.2e-60
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 1


Query: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60
           MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 120
           LL+ILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES
Sbjct: 61  LLIILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of Cucsa.271060 vs. NCBI nr
Match: gi|658003814|ref|XP_008336998.1| (PREDICTED: uncharacterized protein LOC103400088 [Malus domestica])

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-27
Identity = 65/115 (56.52%), Postives = 85/115 (73.91%), Query Frame = 1


Query: 5   VGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPALLMI 64
           +GA  R SRFSSY++ +A+GL LLAV+SPLYIDRR + +   + E  I    WLP LL++
Sbjct: 3   LGATWRTSRFSSYEKLVAIGLALLAVLSPLYIDRRTTDDSELDSEEPISFASWLPLLLLV 62

Query: 65  LIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 120
           LI  IA  L L++  +RFDPYWIHRVGGSS GI IIL++LA VLKCK+S+  W++
Sbjct: 63  LILAIALSLFLDRSFSRFDPYWIHRVGGSSSGITIILMVLALVLKCKSSIRNWDA 117

[Close]

BLAST of Cucsa.271060 vs. NCBI nr
Match: gi|731385112|ref|XP_010648388.1| (PREDICTED: uncharacterized protein LOC100247309 [Vitis vinifera])

HSP 1 Score: 130.6 bits (327), Expect = 1.9e-27
Identity = 68/109 (62.39%), Postives = 83/109 (76.15%), Query Frame = 1


Query: 6   GAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPALLMIL 65
           GA  R +RFSSY+R  A+GL LLAVVSPLYIDRRP ++  E +   I L  WLP LLM+L
Sbjct: 4   GATYRSARFSSYERLGAIGLALLAVVSPLYIDRRPVLDP-ELDVQPISLVSWLPLLLMVL 63

Query: 66  IFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASL 115
           IF I    +L++R +RFDPYWIHRVGGSS GI +IL++LA VLKCKAS+
Sbjct: 64  IFAITLSQYLDRRFSRFDPYWIHRVGGSSVGIIVILMVLALVLKCKASI 111

[Close]

BLAST of Cucsa.271060 vs. NCBI nr
Match: gi|255550181|ref|XP_002516141.1| (PREDICTED: uncharacterized protein LOC8258588 [Ricinus communis])

HSP 1 Score: 130.2 bits (326), Expect = 2.4e-27
Identity = 66/105 (62.86%), Postives = 82/105 (78.10%), Query Frame = 1


Query: 9   SRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPALLMILIFI 68
           +R  R SSY++++ +GLGLLAVVSPLYI+RRP+  +LE EE  I L  WLP LL++LI  
Sbjct: 77  TRSRRISSYEKFVGLGLGLLAVVSPLYINRRPN-SDLELEEQPIDLSSWLPLLLLLLILA 136

Query: 69  IAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKAS 114
           IA  L+L+Q   RFDPYWIHRVGGSS GI +IL++LA VLKCKAS
Sbjct: 137 IALSLYLDQSLTRFDPYWIHRVGGSSGGIIVILVILALVLKCKAS 180

The following BLAST results are available for this feature:

BLAST of Cucsa.271060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2W6_CUCSA	5.2e-61	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G648010 PE=4 SV=1	[more]
F6H2S6_VITVI	1.3e-27	62.39	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g01940 PE=4 SV=...	[more]
B9RQX2_RICCO	1.7e-27	62.86	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0707450 PE=4 SV=1	[more]
B9RQX2_RICCO	2.0e-07	51.39	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0707450 PE=4 SV=1	[more]
I1MX79_SOYBN	2.7e-25	58.18	Uncharacterized protein OS=Glycine max GN=GLYMA_17G225900 PE=4 SV=1	[more]

BLAST of Cucsa.271060 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G21910.1	1.8e-20	49.56	unknown protein	[more]

BLAST of Cucsa.271060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778696747\|ref\|XP_011654202.1\|	7.5e-61	100.00	PREDICTED: uncharacterized protein LOC105435317 [Cucumis sativus]	[more]
gi\|659104041\|ref\|XP_008452787.1\|	2.2e-60	99.16	PREDICTED: uncharacterized protein LOC103493702 [Cucumis melo]	[more]
gi\|658003814\|ref\|XP_008336998.1\|	1.4e-27	56.52	PREDICTED: uncharacterized protein LOC103400088 [Malus domestica]	[more]
gi\|731385112\|ref\|XP_010648388.1\|	1.9e-27	62.39	PREDICTED: uncharacterized protein LOC100247309 [Vitis vinifera]	[more]
gi\|255550181\|ref\|XP_002516141.1\|	2.4e-27	62.86	PREDICTED: uncharacterized protein LOC8258588 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.271060.1	Cucsa.271060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35758	FAMILY NOT NAMED	coord: 5..118 score: 3.2
None	No IPR available	PANTHER	PTHR35758:SF2	SUBFAMILY NOT NAMED	coord: 5..118 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.271060	Cla007453	Watermelon (97103) v1	cgywmB498
Cucsa.271060	Csa4G648010	Cucumber (Chinese Long) v2	cgycuB387
Cucsa.271060	MELO3C016914	Melon (DHL92) v3.5.1	cgymeB454
Cucsa.271060	ClCG05G015760	Watermelon (Charleston Gray)	cgywcgB470
Cucsa.271060	CSPI04G25750	Wild cucumber (PI 183967)	cgycpiB409
Cucsa.271060	CmaCh09G003650	Cucurbita maxima (Rimu)	cgycmaB0750
Cucsa.271060	CmoCh09G003640	Cucurbita moschata (Rifu)	cgycmoB0741
Cucsa.271060	Lsi04G013860	Bottle gourd (USVL1VR-Ls)	cgylsiB439
Cucsa.271060	Cp4.1LG06g02660	Cucurbita pepo (Zucchini)	cgycpeB0711
Cucsa.271060	MELO3C016914.2	Melon (DHL92) v3.6.1	cgymedB450
Cucsa.271060	CsaV3_4G036060	Cucumber (Chinese Long) v3	cgycucB415
Cucsa.271060	Cla97C05G096730	Watermelon (97103) v2	cgywmbB471
Cucsa.271060	Bhi09G002532	Wax gourd	cgywgoB550

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.271060	Cucurbita maxima (Rimu)	cgycmaB0757
Cucsa.271060	Cucurbita pepo (Zucchini)	cgycpeB0707
Cucsa.271060	Silver-seed gourd	carcgyB0710
Cucsa.271060	Silver-seed gourd	carcgyB0875