Cla97C05G096730 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G096730
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Transmembrane protein, putative
Location	Cla97Chr05 : 25823034 .. 25823393 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTTGGAATCGGCGCTACGTCGAGAAGGAGCCGGTTTTCTTCCTACGACCGGTTGGTGGCGGTAGGACTCAGCCTTCTTGCGGTGGTTTCACCGCTCTATATCGACCGGAGACCAAGCATCGAGGCAGAGGAGGAGTTGGAATCATCCATTAAACTTGGCTTCTGGTTGCCTGCTCTTCTCATGACTTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGTGCTAGATTTGATGCTTATTGGATTCATAGAGTTGGTGGCTCTTCTTGTGGCATATTCATCCTTCTTCTCCTTCTTGCATTTGTTTTGAAGTGTAAAGCTTCTTTAATGTTCTGGGAGTCTTAA

mRNA sequence

ATGGAGGTTGGAATCGGCGCTACGTCGAGAAGGAGCCGGTTTTCTTCCTACGACCGGTTGGTGGCGGTAGGACTCAGCCTTCTTGCGGTGGTTTCACCGCTCTATATCGACCGGAGACCAAGCATCGAGGCAGAGGAGGAGTTGGAATCATCCATTAAACTTGGCTTCTGGTTGCCTGCTCTTCTCATGACTTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGTGCTAGATTTGATGCTTATTGGATTCATAGAGTTGGTGGCTCTTCTTGTGGCATATTCATCCTTCTTCTCCTTCTTGCATTTGTTTTGAAGTGTAAAGCTTCTTTAATGTTCTGGGAGTCTTAA

Coding sequence (CDS)

ATGGAGGTTGGAATCGGCGCTACGTCGAGAAGGAGCCGGTTTTCTTCCTACGACCGGTTGGTGGCGGTAGGACTCAGCCTTCTTGCGGTGGTTTCACCGCTCTATATCGACCGGAGACCAAGCATCGAGGCAGAGGAGGAGTTGGAATCATCCATTAAACTTGGCTTCTGGTTGCCTGCTCTTCTCATGACTTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGTGCTAGATTTGATGCTTATTGGATTCATAGAGTTGGTGGCTCTTCTTGTGGCATATTCATCCTTCTTCTCCTTCTTGCATTTGTTTTGAAGTGTAAAGCTTCTTTAATGTTCTGGGAGTCTTAA

Protein sequence

MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPALLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWES

Homology

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BLAST of Cla97C05G096730 vs. NCBI nr
Match: XP_022977145.1 (uncharacterized protein LOC111477299 [Cucurbita maxima])

HSP 1 Score: 216.9 bits (551), Expect = 3.8e-53
Identity = 108/118 (91.53%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPA 60
           MEVGIGATSRRSRFSSYDR VAVGL +LAVVSPLYIDRRPS +AEEE ESS+ LGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWE 119
           LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 118

[Close]

BLAST of Cla97C05G096730 vs. NCBI nr
Match: XP_022936874.1 (uncharacterized protein LOC111443331 [Cucurbita moschata] >XP_023534909.1 uncharacterized protein LOC111796500 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 215.3 bits (547), Expect = 1.1e-52
Identity = 107/118 (90.68%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPA 60
           MEVGIGATSRRSRFSSYDR VAVGL +LAVVSPLYIDRRPS +AEEE ESS+ LGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWE 119
           LL+TLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 118

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BLAST of Cla97C05G096730 vs. NCBI nr
Match: XP_011654202.1 (PREDICTED: uncharacterized protein LOC105435317 [Cucumis sativus] >KGN55379.1 hypothetical protein Csa_4G648010 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 2.1e-51
Identity = 107/119 (89.92%), Postives = 110/119 (92.44%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPA 60
           MEVG+GA SRRSRFSSYDR +AVGL LLAVVSPLYIDRRPSIE  EE ESSI LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWES 120
           LLM LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFWES
Sbjct: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

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BLAST of Cla97C05G096730 vs. NCBI nr
Match: XP_008452787.1 (PREDICTED: uncharacterized protein LOC103493702 [Cucumis melo])

HSP 1 Score: 209.5 bits (532), Expect = 6.1e-51
Identity = 106/119 (89.08%), Postives = 110/119 (92.44%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPA 60
           MEVG+GA SRRSRFSSYDR +AVGL LLAVVSPLYIDRRPSIE  EE ESSI LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWES 120
           LL+ LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFWES
Sbjct: 61  LLIILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of Cla97C05G096730 vs. NCBI nr
Match: XP_022142189.1 (uncharacterized protein LOC111012362 [Momordica charantia])

HSP 1 Score: 191.4 bits (485), Expect = 1.7e-45
Identity = 92/110 (83.64%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 9   SRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPALLMTLIFI 68
           SRRS FSSYDRLVAVGL LLAVVSPLYIDRRP++E +E+ ESSI  GFWLP LL+TLIF+
Sbjct: 2   SRRSGFSSYDRLVAVGLGLLAVVSPLYIDRRPTVELDEDEESSINFGFWLPVLLITLIFV 61

Query: 69  IAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWE 119
           IAG+LHLEQRCARFDAYWIHRVGGSSCGIF +LLLLAFVLKC+ASL+FWE
Sbjct: 62  IAGLLHLEQRCARFDAYWIHRVGGSSCGIFFILLLLAFVLKCRASLVFWE 111

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BLAST of Cla97C05G096730 vs. TrEMBL
Match: tr|A0A0A0L2W6|A0A0A0L2W6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G648010 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.4e-51
Identity = 107/119 (89.92%), Postives = 110/119 (92.44%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPA 60
           MEVG+GA SRRSRFSSYDR +AVGL LLAVVSPLYIDRRPSIE  EE ESSI LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWES 120
           LLM LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFWES
Sbjct: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of Cla97C05G096730 vs. TrEMBL
Match: tr|A0A1S3BUL9|A0A1S3BUL9_CUCME (uncharacterized protein LOC103493702 OS=Cucumis melo OX=3656 GN=LOC103493702 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.0e-51
Identity = 106/119 (89.08%), Postives = 110/119 (92.44%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPA 60
           MEVG+GA SRRSRFSSYDR +AVGL LLAVVSPLYIDRRPSIE  EE ESSI LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWES 120
           LL+ LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFWES
Sbjct: 61  LLIILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of Cla97C05G096730 vs. TrEMBL
Match: tr|A0A2P5CQT1|A0A2P5CQT1_9ROSA (Transmembrane protein OS=Trema orientalis OX=63057 GN=TorRG33x02_276510 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.2e-28
Identity = 69/115 (60.00%), Postives = 87/115 (75.65%), Query Frame = 0


Query: 5   IGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPALLMT 64
           +GAT RRSRFSSY+RL+A+G++LLAV+SPLYIDRR   + E + E+++    WLP LL  
Sbjct: 3   LGATWRRSRFSSYERLLAIGMALLAVISPLYIDRREVSDPELD-EAAMSFDHWLPLLLFF 62

Query: 65  LIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWES 120
           LI  IA  L L++   RFD YWIHRVGGSS GI ++LL+LA VLKCKASL  WE+
Sbjct: 63  LISAIALSLFLDRSLTRFDPYWIHRVGGSSGGILVILLVLALVLKCKASLRNWEA 116

[Close]

BLAST of Cla97C05G096730 vs. TrEMBL
Match: tr|F6H2S6|F6H2S6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0008g01940 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-27
Identity = 68/109 (62.39%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 6   GATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPALLMTL 65
           GAT R +RFSSY+RL A+GL+LLAVVSPLYIDRRP ++ E +++  I L  WLP LLM L
Sbjct: 4   GATYRSARFSSYERLGAIGLALLAVVSPLYIDRRPVLDPELDVQ-PISLVSWLPLLLMVL 63

Query: 66  IFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASL 115
           IF I    +L++R +RFD YWIHRVGGSS GI ++L++LA VLKCKAS+
Sbjct: 64  IFAITLSQYLDRRFSRFDPYWIHRVGGSSVGIIVILMVLALVLKCKASI 111

[Close]

BLAST of Cla97C05G096730 vs. TrEMBL
Match: tr|A0A2P5DIM9|A0A2P5DIM9_PARAD (Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_059460 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.8e-27
Identity = 67/115 (58.26%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 5   IGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPALLMT 64
           +GAT R+SRFSSY+RL+A+G++LLAV+SPLYIDRR   + E + E+++   +WLP LL  
Sbjct: 3   LGATWRKSRFSSYERLLAIGMALLAVISPLYIDRREVSDPELD-EAAMSFDYWLPLLLFF 62

Query: 65  LIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWES 120
           LI  IA  L L++   +FD YWIHRVGGSS GI ++LL+LA VLKCKASL  WE+
Sbjct: 63  LISAIALSLFLDRSLTQFDPYWIHRVGGSSGGILVILLVLALVLKCKASLRNWEA 116

[Close]

BLAST of Cla97C05G096730 vs. TAIR10
Match: AT5G21910.1 (unknown protein)

HSP 1 Score: 64.7 bits (156), Expect = 4.4e-11
Identity = 43/116 (37.07%), Postives = 61/116 (52.59%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEEL---ESSIKLGFW 60
           ME G  ++    RF++  +L+A+ LS+LAV+SPLYIDR     +EE+L            
Sbjct: 1   METG-SSSPMMGRFTTSRKLLAISLSVLAVLSPLYIDRL----SEEDLXXXXXXXXXXXX 60

Query: 61  LPALLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKAS 114
                           + +    RFD YWIHR+ GS  G+ ++L+LL FVL CKAS
Sbjct: 61  XXXXXXXXXXXXXXXXYSDPSLTRFDPYWIHRLCGSFGGLLVILILLVFVLICKAS 111

The following BLAST results are available for this feature:

BLAST of Cla97C05G096730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977145.1	3.8e-53	91.53	uncharacterized protein LOC111477299 [Cucurbita maxima]	[more]
XP_022936874.1	1.1e-52	90.68	uncharacterized protein LOC111443331 [Cucurbita moschata] >XP_023534909.1 unchar...	[more]
XP_011654202.1	2.1e-51	89.92	PREDICTED: uncharacterized protein LOC105435317 [Cucumis sativus] >KGN55379.1 hy...	[more]
XP_008452787.1	6.1e-51	89.08	PREDICTED: uncharacterized protein LOC103493702 [Cucumis melo]	[more]
XP_022142189.1	1.7e-45	83.64	uncharacterized protein LOC111012362 [Momordica charantia]	[more]

BLAST of Cla97C05G096730 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L2W6\|A0A0A0L2W6_CUCSA	1.4e-51	89.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G648010 PE=4 SV=1	[more]
tr\|A0A1S3BUL9\|A0A1S3BUL9_CUCME	4.0e-51	89.08	uncharacterized protein LOC103493702 OS=Cucumis melo OX=3656 GN=LOC103493702 PE=...	[more]
tr\|A0A2P5CQT1\|A0A2P5CQT1_9ROSA	8.2e-28	60.00	Transmembrane protein OS=Trema orientalis OX=63057 GN=TorRG33x02_276510 PE=4 SV=...	[more]
tr\|F6H2S6\|F6H2S6_VITVI	1.4e-27	62.39	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0008g01940 PE=4 SV=...	[more]
tr\|A0A2P5DIM9\|A0A2P5DIM9_PARAD	1.8e-27	58.26	Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_059460 PE=4...	[more]

BLAST of Cla97C05G096730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G096730 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G21910.1	4.4e-11	37.07	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G096730.1	Cla97C05G096730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35758:SF2	SUBFAMILY NOT NAMED	coord: 6..113
None	No IPR available	PANTHER	PTHR35758	FAMILY NOT NAMED	coord: 6..113

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G096730	Cla007453	Watermelon (97103) v1	wmwmbB207
Cla97C05G096730	Csa4G648010	Cucumber (Chinese Long) v2	cuwmbB306
Cla97C05G096730	MELO3C016914	Melon (DHL92) v3.5.1	mewmbB484
Cla97C05G096730	ClCG05G015760	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G096730	CSPI04G25750	Wild cucumber (PI 183967)	cpiwmbB315
Cla97C05G096730	Cucsa.271060	Cucumber (Gy14) v1	cgywmbB471
Cla97C05G096730	CmaCh09G003650	Cucurbita maxima (Rimu)	cmawmbB027
Cla97C05G096730	CmoCh09G003640	Cucurbita moschata (Rifu)	cmowmbB015
Cla97C05G096730	Lsi04G013860	Bottle gourd (USVL1VR-Ls)	lsiwmbB289
Cla97C05G096730	MELO3C016914.2	Melon (DHL92) v3.6.1	medwmbB478
Cla97C05G096730	CsaV3_4G036060	Cucumber (Chinese Long) v3	cucwmbB313
Cla97C05G096730	Bhi09G002532	Wax gourd	wgowmbB580

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G096730	Silver-seed gourd	carwmbB0659
Cla97C05G096730	Silver-seed gourd	carwmbB0808
Cla97C05G096730	Cucumber (Gy14) v2	cgybwmbB289
Cla97C05G096730	Cucurbita maxima (Rimu)	cmawmbB480