CmaCh09G003650 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G003650
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTransmembrane protein, putative
LocationCma_Chr09 : 1513008 .. 1513367 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTCGGGATCGGGGCTACGTCGAGGAGGAGCCGGTTTTCTTCGTACGACCGGTGGGTGGCAGTAGGACTTGGGATTCTTGCAGTGGTTTCGCCGCTCTATATCGACCGGAGACCGAGCTTTGATGCGGAGGAGGAGGAGGAATCGTCCATGAATCTTGGGTTCTGGTTGCCTGCTCTTCTCATGACCTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGCGCCAGATTTGATGCTTATTGGATTCACAGAGTAGGTGGCTCTTCCTGTGGCATATTCATCGTTCTTCTGCTTCTTGCATTTGTTTTGAAATGTAAAGCTTCTTTAATGTTCTGGGACCCTTGA

mRNA sequence

ATGGAGGTCGGGATCGGGGCTACGTCGAGGAGGAGCCGGTTTTCTTCGTACGACCGGTGGGTGGCAGTAGGACTTGGGATTCTTGCAGTGGTTTCGCCGCTCTATATCGACCGGAGACCGAGCTTTGATGCGGAGGAGGAGGAGGAATCGTCCATGAATCTTGGGTTCTGGTTGCCTGCTCTTCTCATGACCTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGCGCCAGATTTGATGCTTATTGGATTCACAGAGTAGGTGGCTCTTCCTGTGGCATATTCATCGTTCTTCTGCTTCTTGCATTTGTTTTGAAATGTAAAGCTTCTTTAATGTTCTGGGACCCTTGA

Coding sequence (CDS)

ATGGAGGTCGGGATCGGGGCTACGTCGAGGAGGAGCCGGTTTTCTTCGTACGACCGGTGGGTGGCAGTAGGACTTGGGATTCTTGCAGTGGTTTCGCCGCTCTATATCGACCGGAGACCGAGCTTTGATGCGGAGGAGGAGGAGGAATCGTCCATGAATCTTGGGTTCTGGTTGCCTGCTCTTCTCATGACCTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGCGCCAGATTTGATGCTTATTGGATTCACAGAGTAGGTGGCTCTTCCTGTGGCATATTCATCGTTCTTCTGCTTCTTGCATTTGTTTTGAAATGTAAAGCTTCTTTAATGTTCTGGGACCCTTGA

Protein sequence

MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPALLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWDP
Homology
[Close]
BLAST of CmaCh09G003650 vs. TrEMBL
Match: A0A0A0L2W6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G648010 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.6e-54
Identity = 104/118 (88.14%), Postives = 112/118 (94.92%), Query Frame = 1 

Query: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60
           MEVG+GA SRRSRFSSYDRW+AVGLG+LAVVSPLYIDRRPS +  EEEESS++LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 119
           LLM LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWE 118

[Close]
BLAST of CmaCh09G003650 vs. TrEMBL
Match: F6H2S6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g01940 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.7e-27
Identity = 66/109 (60.55%), Postives = 83/109 (76.15%), Query Frame = 1 

Query: 6   GATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPALLMTL 65
           GAT R +RFSSY+R  A+GL +LAVVSPLYIDRRP  D E + +  ++L  WLP LLM L
Sbjct: 4   GATYRSARFSSYERLGAIGLALLAVVSPLYIDRRPVLDPELDVQP-ISLVSWLPLLLMVL 63

Query: 66  IFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASL 115
           IF I    +L++R +RFD YWIHRVGGSS GI ++L++LA VLKCKAS+
Sbjct: 64  IFAITLSQYLDRRFSRFDPYWIHRVGGSSVGIIVILMVLALVLKCKASI 111

[Close]
BLAST of CmaCh09G003650 vs. TrEMBL
Match: B9RQX2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0707450 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 63/105 (60.00%), Postives = 81/105 (77.14%), Query Frame = 1 

Query: 9   SRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPALLMTLIFI 68
           +R  R SSY+++V +GLG+LAVVSPLYI+RRP+ D E EE+  ++L  WLP LL+ LI  
Sbjct: 77  TRSRRISSYEKFVGLGLGLLAVVSPLYINRRPNSDLELEEQP-IDLSSWLPLLLLLLILA 136

Query: 69  IAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKAS 114
           IA  L+L+Q   RFD YWIHRVGGSS GI ++L++LA VLKCKAS
Sbjct: 137 IALSLYLDQSLTRFDPYWIHRVGGSSGGIIVILVILALVLKCKAS 180

[Close]
BLAST of CmaCh09G003650 vs. TrEMBL
Match: A0A0B2RVF8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009088 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.7e-25
Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 1 

Query: 5   IGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPALLMT 64
           +G +SR+SRFSSY+R  A+ L +LAV SPLYID RP  + E+EE+S ++  FWLP LL  
Sbjct: 3   LGDSSRKSRFSSYERVAAISLVVLAVASPLYIDHRPESELEDEEQS-LSFAFWLPLLLFV 62

Query: 65  LIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASL 115
           LI  IA    L++   RFD +WIHRVGGSS GI ++L++L  VLKCKAS+
Sbjct: 63  LIIAIALSAFLDRNFTRFDRHWIHRVGGSSGGIVLILVVLFLVLKCKASV 111

[Close]
BLAST of CmaCh09G003650 vs. TrEMBL
Match: I1MX79_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G225900 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.7e-25
Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 1 

Query: 5   IGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPALLMT 64
           +G +SR+SRFSSY+R  A+ L +LAV SPLYID RP  + E+EE+S ++  FWLP LL  
Sbjct: 3   LGDSSRKSRFSSYERVAAISLVVLAVASPLYIDHRPESELEDEEQS-LSFAFWLPLLLFV 62

Query: 65  LIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASL 115
           LI  IA    L++   RFD +WIHRVGGSS GI ++L++L  VLKCKAS+
Sbjct: 63  LIIAIALSAFLDRNFTRFDRHWIHRVGGSSGGIVLILVVLFLVLKCKASV 111

[Close]
BLAST of CmaCh09G003650 vs. TAIR10
Match: AT5G21910.1 (AT5G21910.1 unknown protein)

HSP 1 Score: 92.0 bits (227), Expect = 2.6e-19
Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = 1 

Query: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60
           ME G  ++    RF++  + +A+ L +LAV+SPLYIDR    D EEEEE   +  F    
Sbjct: 1   METG-SSSPMMGRFTTSRKLLAISLSVLAVLSPLYIDRLSEEDLEEEEEL-FSFMFSFSL 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKAS 114
           LL+ LI  IA  L+ +    RFD YWIHR+ GS  G+ ++L+LL FVL CKAS
Sbjct: 61  LLLLLILAIALSLYSDPSLTRFDPYWIHRLCGSFGGLLVILILLVFVLICKAS 111

[Close]
BLAST of CmaCh09G003650 vs. NCBI nr
Match: gi|778696747|ref|XP_011654202.1| (PREDICTED: uncharacterized protein LOC105435317 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 5.2e-54
Identity = 104/118 (88.14%), Postives = 112/118 (94.92%), Query Frame = 1 

Query: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60
           MEVG+GA SRRSRFSSYDRW+AVGLG+LAVVSPLYIDRRPS +  EEEESS++LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 119
           LLM LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWE 118

[Close]
BLAST of CmaCh09G003650 vs. NCBI nr
Match: gi|659104041|ref|XP_008452787.1| (PREDICTED: uncharacterized protein LOC103493702 [Cucumis melo])

HSP 1 Score: 217.2 bits (552), Expect = 1.5e-53
Identity = 103/118 (87.29%), Postives = 112/118 (94.92%), Query Frame = 1 

Query: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60
           MEVG+GA SRRSRFSSYDRW+AVGLG+LAVVSPLYIDRRPS +  EEEESS++LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 119
           LL+ LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLIILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWE 118

[Close]
BLAST of CmaCh09G003650 vs. NCBI nr
Match: gi|658003814|ref|XP_008336998.1| (PREDICTED: uncharacterized protein LOC103400088 [Malus domestica])

HSP 1 Score: 136.3 bits (342), Expect = 3.4e-29
Identity = 66/114 (57.89%), Postives = 86/114 (75.44%), Query Frame = 1 

Query: 5   IGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPALLMT 64
           +GAT R SRFSSY++ VA+GL +LAV+SPLYIDRR + D+E + E  ++   WLP LL+ 
Sbjct: 3   LGATWRTSRFSSYEKLVAIGLALLAVLSPLYIDRRTTDDSELDSEEPISFASWLPLLLLV 62

Query: 65  LIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 119
           LI  IA  L L++  +RFD YWIHRVGGSS GI I+L++LA VLKCK+S+  WD
Sbjct: 63  LILAIALSLFLDRSFSRFDPYWIHRVGGSSSGITIILMVLALVLKCKSSIRNWD 116

[Close]
BLAST of CmaCh09G003650 vs. NCBI nr
Match: gi|694412749|ref|XP_009334677.1| (PREDICTED: uncharacterized protein LOC103927476 [Pyrus x bretschneideri])

HSP 1 Score: 132.1 bits (331), Expect = 6.4e-28
Identity = 63/115 (54.78%), Postives = 86/115 (74.78%), Query Frame = 1 

Query: 5   IGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPALLMT 64
           +GAT R SRF S ++ VA+GL +LAV+SPLYIDRR + D+E + +  +N   WLP LL+ 
Sbjct: 3   LGATRRTSRFPSCNKLVAIGLSLLAVLSPLYIDRRTTDDSELDPDDPINFASWLPLLLLV 62

Query: 65  LIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWDP 120
           LI  IA  L++++  +RFD YWIHRVGGSSCGI I+L++LA VLKCK+S+   +P
Sbjct: 63  LILAIALSLYIDRSFSRFDPYWIHRVGGSSCGITIILMVLALVLKCKSSIRNREP 117

[Close]
BLAST of CmaCh09G003650 vs. NCBI nr
Match: gi|731385112|ref|XP_010648388.1| (PREDICTED: uncharacterized protein LOC100247309 [Vitis vinifera])

HSP 1 Score: 130.2 bits (326), Expect = 2.4e-27
Identity = 66/109 (60.55%), Postives = 83/109 (76.15%), Query Frame = 1 

Query: 6   GATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPALLMTL 65
           GAT R +RFSSY+R  A+GL +LAVVSPLYIDRRP  D E + +  ++L  WLP LLM L
Sbjct: 4   GATYRSARFSSYERLGAIGLALLAVVSPLYIDRRPVLDPELDVQP-ISLVSWLPLLLMVL 63

Query: 66  IFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASL 115
           IF I    +L++R +RFD YWIHRVGGSS GI ++L++LA VLKCKAS+
Sbjct: 64  IFAITLSQYLDRRFSRFDPYWIHRVGGSSVGIIVILMVLALVLKCKASI 111

The following BLAST results are available for this feature:
BLAST of CmaCh09G003650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh09G003650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2W6_CUCSA3.6e-5488.14Uncharacterized protein OS=Cucumis sativus GN=Csa_4G648010 PE=4 SV=1[more]
F6H2S6_VITVI1.7e-2760.55Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g01940 PE=4 SV=... [more]
B9RQX2_RICCO1.4e-2660.00Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0707450 PE=4 SV=1[more]
A0A0B2RVF8_GLYSO2.7e-2555.45Uncharacterized protein OS=Glycine soja GN=glysoja_009088 PE=4 SV=1[more]
I1MX79_SOYBN2.7e-2555.45Uncharacterized protein OS=Glycine max GN=GLYMA_17G225900 PE=4 SV=1[more]
BLAST of CmaCh09G003650 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G21910.12.6e-1946.02 unknown protein[more]
BLAST of CmaCh09G003650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778696747|ref|XP_011654202.1|5.2e-5488.14PREDICTED: uncharacterized protein LOC105435317 [Cucumis sativus][more]
gi|659104041|ref|XP_008452787.1|1.5e-5387.29PREDICTED: uncharacterized protein LOC103493702 [Cucumis melo][more]
gi|658003814|ref|XP_008336998.1|3.4e-2957.89PREDICTED: uncharacterized protein LOC103400088 [Malus domestica][more]
gi|694412749|ref|XP_009334677.1|6.4e-2854.78PREDICTED: uncharacterized protein LOC103927476 [Pyrus x bretschneideri][more]
gi|731385112|ref|XP_010648388.1|2.4e-2760.55PREDICTED: uncharacterized protein LOC100247309 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G003650.1CmaCh09G003650.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35758FAMILY NOT NAMEDcoord: 5..118
score: 8.1
NoneNo IPR availablePANTHERPTHR35758:SF2SUBFAMILY NOT NAMEDcoord: 5..118
score: 8.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh09G003650Cucsa.271060Cucumber (Gy14) v1cgycmaB0750
CmaCh09G003650Cla007453Watermelon (97103) v1cmawmB027
CmaCh09G003650Csa4G648010Cucumber (Chinese Long) v2cmacuB020
CmaCh09G003650MELO3C016914Melon (DHL92) v3.5.1cmameB040
CmaCh09G003650ClCG05G015760Watermelon (Charleston Gray)cmawcgB022
CmaCh09G003650CSPI04G25750Wild cucumber (PI 183967)cmacpiB020
CmaCh09G003650CmoCh09G003640Cucurbita moschata (Rifu)cmacmoB027
CmaCh09G003650Lsi04G013860Bottle gourd (USVL1VR-Ls)cmalsiB024
CmaCh09G003650Cp4.1LG06g02660Cucurbita pepo (Zucchini)cmacpeB060
CmaCh09G003650MELO3C016914.2Melon (DHL92) v3.6.1cmamedB039
CmaCh09G003650CsaV3_4G036060Cucumber (Chinese Long) v3cmacucB0027
CmaCh09G003650Cla97C05G096730Watermelon (97103) v2cmawmbB027
CmaCh09G003650Bhi09G002532Wax gourdcmawgoB0035
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G003650Cucurbita pepo (Zucchini)cmacpeB032
CmaCh09G003650Cucurbita pepo (Zucchini)cmacpeB045
CmaCh09G003650Bottle gourd (USVL1VR-Ls)cmalsiB021
CmaCh09G003650Cucumber (Gy14) v2cgybcmaB465
CmaCh09G003650Cucumber (Gy14) v2cgybcmaB890
CmaCh09G003650Melon (DHL92) v3.6.1cmamedB022
CmaCh09G003650Silver-seed gourdcarcmaB0889
CmaCh09G003650Silver-seed gourdcarcmaB1065
CmaCh09G003650Cucumber (Chinese Long) v3cmacucB0055
CmaCh09G003650Watermelon (97103) v2cmawmbB051
CmaCh09G003650Wax gourdcmawgoB0044
CmaCh09G003650Cucurbita maxima (Rimu)cmacmaB051
CmaCh09G003650Cucumber (Gy14) v1cgycmaB0975
CmaCh09G003650Wild cucumber (PI 183967)cmacpiB048
CmaCh09G003650Cucumber (Chinese Long) v2cmacuB047
CmaCh09G003650Melon (DHL92) v3.5.1cmameB021
CmaCh09G003650Watermelon (Charleston Gray)cmawcgB010
CmaCh09G003650Watermelon (97103) v1cmawmB012