Cla007453 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007453
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 23552244 .. 23552603 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTTGGAATCGGCGCTACGTCGAGAAGGAGCCGGTTTTCTTCCTACGACCGGTTGGTGGCGGTAGGACTCAGCCTTCTTGCGGTGGTTTCACCGCTCTATATCGACCGGAGACCAAGCATCGAGGCAGAGGAGGAGTTGGAATCATCCATTAAACTTGGCTTCTGGTTGCCTGCTCTTCTCATGACTTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGTGCTAGATTTGATGCTTATTGGATTCATAGAGTTGGTGGCTCTTCTTGTGGCATATTCATCCTTCTTCTCCTTCTTGCATTTGTTTTGAAGTGTAAAGCTTCTTTAATGTTCTGGGAGTCTTAA

mRNA sequence

ATGGAGGTTGGAATCGGCGCTACGTCGAGAAGGAGCCGGTTTTCTTCCTACGACCGGTTGGTGGCGGTAGGACTCAGCCTTCTTGCGGTGGTTTCACCGCTCTATATCGACCGGAGACCAAGCATCGAGGCAGAGGAGGAGTTGGAATCATCCATTAAACTTGGCTTCTGGTTGCCTGCTCTTCTCATGACTTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGTGCTAGATTTGATGCTTATTGGATTCATAGAGTTGGTGGCTCTTCTTGTGGCATATTCATCCTTCTTCTCCTTCTTGCATTTGTTTTGAAGTGTAAAGCTTCTTTAATGTTCTGGGAGTCTTAA

Coding sequence (CDS)

ATGGAGGTTGGAATCGGCGCTACGTCGAGAAGGAGCCGGTTTTCTTCCTACGACCGGTTGGTGGCGGTAGGACTCAGCCTTCTTGCGGTGGTTTCACCGCTCTATATCGACCGGAGACCAAGCATCGAGGCAGAGGAGGAGTTGGAATCATCCATTAAACTTGGCTTCTGGTTGCCTGCTCTTCTCATGACTTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGTGCTAGATTTGATGCTTATTGGATTCATAGAGTTGGTGGCTCTTCTTGTGGCATATTCATCCTTCTTCTCCTTCTTGCATTTGTTTTGAAGTGTAAAGCTTCTTTAATGTTCTGGGAGTCTTAA

Protein sequence

MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPALLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWES

Homology

[Close]

BLAST of Cla007453 vs. TrEMBL
Match: A0A0A0L2W6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G648010 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.0e-52
Identity = 107/119 (89.92%), Postives = 110/119 (92.44%), Query Frame = 1


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPA 60
           MEVG+GA SRRSRFSSYDR +AVGL LLAVVSPLYIDRRPSIE  EE ESSI LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWES 120
           LLM LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFWES
Sbjct: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of Cla007453 vs. TrEMBL
Match: F6H2S6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g01940 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-28
Identity = 68/109 (62.39%), Postives = 86/109 (78.90%), Query Frame = 1


Query: 6   GATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPALLMTL 65
           GAT R +RFSSY+RL A+GL+LLAVVSPLYIDRRP ++ E +++  I L  WLP LLM L
Sbjct: 4   GATYRSARFSSYERLGAIGLALLAVVSPLYIDRRPVLDPELDVQP-ISLVSWLPLLLMVL 63

Query: 66  IFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASL 115
           IF I    +L++R +RFD YWIHRVGGSS GI ++L++LA VLKCKAS+
Sbjct: 64  IFAITLSQYLDRRFSRFDPYWIHRVGGSSVGIIVILMVLALVLKCKASI 111

[Close]

BLAST of Cla007453 vs. TrEMBL
Match: I1MX79_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G225900 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.5e-25
Identity = 62/110 (56.36%), Postives = 79/110 (71.82%), Query Frame = 1


Query: 5   IGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPALLMT 64
           +G +SR+SRFSSY+R+ A+ L +LAV SPLYID RP  E E+E E S+   FWLP LL  
Sbjct: 3   LGDSSRKSRFSSYERVAAISLVVLAVASPLYIDHRPESELEDE-EQSLSFAFWLPLLLFV 62

Query: 65  LIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASL 115
           LI  IA    L++   RFD +WIHRVGGSS GI ++L++L  VLKCKAS+
Sbjct: 63  LIIAIALSAFLDRNFTRFDRHWIHRVGGSSGGIVLILVVLFLVLKCKASV 111

[Close]

BLAST of Cla007453 vs. TrEMBL
Match: A0A0B2RVF8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009088 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.5e-25
Identity = 62/110 (56.36%), Postives = 79/110 (71.82%), Query Frame = 1


Query: 5   IGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPALLMT 64
           +G +SR+SRFSSY+R+ A+ L +LAV SPLYID RP  E E+E E S+   FWLP LL  
Sbjct: 3   LGDSSRKSRFSSYERVAAISLVVLAVASPLYIDHRPESELEDE-EQSLSFAFWLPLLLFV 62

Query: 65  LIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASL 115
           LI  IA    L++   RFD +WIHRVGGSS GI ++L++L  VLKCKAS+
Sbjct: 63  LIIAIALSAFLDRNFTRFDRHWIHRVGGSSGGIVLILVVLFLVLKCKASV 111

[Close]

BLAST of Cla007453 vs. TrEMBL
Match: B9RQX2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0707450 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.0e-24
Identity = 63/105 (60.00%), Postives = 77/105 (73.33%), Query Frame = 1


Query: 9   SRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPALLMTLIFI 68
           +R  R SSY++ V +GL LLAVVSPLYI+RRP+ + E E E  I L  WLP LL+ LI  
Sbjct: 77  TRSRRISSYEKFVGLGLGLLAVVSPLYINRRPNSDLELE-EQPIDLSSWLPLLLLLLILA 136

Query: 69  IAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKAS 114
           IA  L+L+Q   RFD YWIHRVGGSS GI ++L++LA VLKCKAS
Sbjct: 137 IALSLYLDQSLTRFDPYWIHRVGGSSGGIIVILVILALVLKCKAS 180

[Close]

BLAST of Cla007453 vs. NCBI nr
Match: gi|778696747|ref|XP_011654202.1| (PREDICTED: uncharacterized protein LOC105435317 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 2.8e-52
Identity = 107/119 (89.92%), Postives = 110/119 (92.44%), Query Frame = 1


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPA 60
           MEVG+GA SRRSRFSSYDR +AVGL LLAVVSPLYIDRRPSIE  EE ESSI LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWES 120
           LLM LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFWES
Sbjct: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of Cla007453 vs. NCBI nr
Match: gi|659104041|ref|XP_008452787.1| (PREDICTED: uncharacterized protein LOC103493702 [Cucumis melo])

HSP 1 Score: 211.5 bits (537), Expect = 8.3e-52
Identity = 106/119 (89.08%), Postives = 110/119 (92.44%), Query Frame = 1


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPA 60
           MEVG+GA SRRSRFSSYDR +AVGL LLAVVSPLYIDRRPSIE  EE ESSI LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWES 120
           LL+ LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFWES
Sbjct: 61  LLIILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of Cla007453 vs. NCBI nr
Match: gi|658003814|ref|XP_008336998.1| (PREDICTED: uncharacterized protein LOC103400088 [Malus domestica])

HSP 1 Score: 135.6 bits (340), Expect = 5.8e-29
Identity = 67/115 (58.26%), Postives = 88/115 (76.52%), Query Frame = 1


Query: 5   IGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPALLMT 64
           +GAT R SRFSSY++LVA+GL+LLAV+SPLYIDRR + ++E + E  I    WLP LL+ 
Sbjct: 3   LGATWRTSRFSSYEKLVAIGLALLAVLSPLYIDRRTTDDSELDSEEPISFASWLPLLLLV 62

Query: 65  LIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWES 120
           LI  IA  L L++  +RFD YWIHRVGGSS GI I+L++LA VLKCK+S+  W++
Sbjct: 63  LILAIALSLFLDRSFSRFDPYWIHRVGGSSSGITIILMVLALVLKCKSSIRNWDA 117

[Close]

BLAST of Cla007453 vs. NCBI nr
Match: gi|731385112|ref|XP_010648388.1| (PREDICTED: uncharacterized protein LOC100247309 [Vitis vinifera])

HSP 1 Score: 133.3 bits (334), Expect = 2.9e-28
Identity = 68/109 (62.39%), Postives = 86/109 (78.90%), Query Frame = 1


Query: 6   GATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPALLMTL 65
           GAT R +RFSSY+RL A+GL+LLAVVSPLYIDRRP ++ E +++  I L  WLP LLM L
Sbjct: 4   GATYRSARFSSYERLGAIGLALLAVVSPLYIDRRPVLDPELDVQP-ISLVSWLPLLLMVL 63

Query: 66  IFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASL 115
           IF I    +L++R +RFD YWIHRVGGSS GI ++L++LA VLKCKAS+
Sbjct: 64  IFAITLSQYLDRRFSRFDPYWIHRVGGSSVGIIVILMVLALVLKCKASI 111

[Close]

BLAST of Cla007453 vs. NCBI nr
Match: gi|764607604|ref|XP_011467224.1| (PREDICTED: uncharacterized protein LOC101299882 [Fragaria vesca subsp. vesca])

HSP 1 Score: 132.9 bits (333), Expect = 3.7e-28
Identity = 67/114 (58.77%), Postives = 83/114 (72.81%), Query Frame = 1


Query: 6   GATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPALLMTL 65
           GAT R SRFSSY+RLVA+GL+LLAV+SPLYID+    ++E EL+  I    WLP LL+ L
Sbjct: 4   GATRRTSRFSSYERLVAIGLALLAVLSPLYIDQTTGDDSELELQEPINFAAWLPLLLVVL 63

Query: 66  IFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWES 120
           I  I   L+L++   RFD YWI+RVGGSS GI + LL+LA VLKCKAS   WE+
Sbjct: 64  ILAITFSLYLDRSFTRFDPYWIYRVGGSSSGIIVTLLVLALVLKCKASAWNWEA 117

The following BLAST results are available for this feature:

BLAST of Cla007453 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2W6_CUCSA	2.0e-52	89.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G648010 PE=4 SV=1	[more]
F6H2S6_VITVI	2.0e-28	62.39	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g01940 PE=4 SV=...	[more]
I1MX79_SOYBN	3.5e-25	56.36	Uncharacterized protein OS=Glycine max GN=GLYMA_17G225900 PE=4 SV=1	[more]
A0A0B2RVF8_GLYSO	3.5e-25	56.36	Uncharacterized protein OS=Glycine soja GN=glysoja_009088 PE=4 SV=1	[more]
B9RQX2_RICCO	1.0e-24	60.00	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0707450 PE=4 SV=1	[more]

BLAST of Cla007453 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778696747\|ref\|XP_011654202.1\|	2.8e-52	89.92	PREDICTED: uncharacterized protein LOC105435317 [Cucumis sativus]	[more]
gi\|659104041\|ref\|XP_008452787.1\|	8.3e-52	89.08	PREDICTED: uncharacterized protein LOC103493702 [Cucumis melo]	[more]
gi\|658003814\|ref\|XP_008336998.1\|	5.8e-29	58.26	PREDICTED: uncharacterized protein LOC103400088 [Malus domestica]	[more]
gi\|731385112\|ref\|XP_010648388.1\|	2.9e-28	62.39	PREDICTED: uncharacterized protein LOC100247309 [Vitis vinifera]	[more]
gi\|764607604\|ref\|XP_011467224.1\|	3.7e-28	58.77	PREDICTED: uncharacterized protein LOC101299882 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU14336	watermelon EST collection version 2.0	transcribed_cluster
WMU16194	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007453	Cla007453.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU16194	WMU16194	transcribed_cluster
WMU14336	WMU14336	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35758	FAMILY NOT NAMED	coord: 5..118 score: 5.7
None	No IPR available	PANTHER	PTHR35758:SF2	SUBFAMILY NOT NAMED	coord: 5..118 score: 5.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla007453	Cla97C05G096730	Watermelon (97103) v2	wmwmbB207
Cla007453	Csa4G648010	Cucumber (Chinese Long) v2	cuwmB320
Cla007453	MELO3C016914	Melon (DHL92) v3.5.1	mewmB528
Cla007453	ClCG05G015760	Watermelon (Charleston Gray)	wcgwmB285
Cla007453	CSPI04G25750	Wild cucumber (PI 183967)	cpiwmB325
Cla007453	Cucsa.271060	Cucumber (Gy14) v1	cgywmB498
Cla007453	CmaCh09G003650	Cucurbita maxima (Rimu)	cmawmB027
Cla007453	CmoCh09G003640	Cucurbita moschata (Rifu)	cmowmB019
Cla007453	Lsi04G013860	Bottle gourd (USVL1VR-Ls)	lsiwmB318
Cla007453	Cp4.1LG06g02660	Cucurbita pepo (Zucchini)	cpewmB766
Cla007453	MELO3C016914.2	Melon (DHL92) v3.6.1	medwmB513
Cla007453	CsaV3_4G036060	Cucumber (Chinese Long) v3	cucwmB333
Cla007453	Bhi09G002532	Wax gourd	wgowmB624

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007453	Melon (DHL92) v3.6.1	medwmB365
Cla007453	Silver-seed gourd	carwmB0630
Cla007453	Silver-seed gourd	carwmB0770
Cla007453	Cucumber (Gy14) v1	cgywmB616
Cla007453	Cucurbita maxima (Rimu)	cmawmB441
Cla007453	Cucurbita pepo (Zucchini)	cpewmB560
Cla007453	Bottle gourd (USVL1VR-Ls)	lsiwmB319
Cla007453	Cucumber (Gy14) v2	cgybwmB235
Cla007453	Cucumber (Gy14) v2	cgybwmB296